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Gram positive phyla
Actinobacteria and Firmicutes
Gram negative phyla
Proteobacteria and Bacteroidetes
Gram Stain Procedure
Heat fixed smear flooded with crystal violet. Wash with iodine then alcohol. Safranin added for Gram negative stain.
Gram positive cell walls
up to 90% peptidoglycan. Usually contain embedded teichoic acids
lipoteichoic acids
teichoic acids covalently bound to membrane lipids
Morphology
Refers to the shape of bacterial cells, with major types being coccus (spherical), rod (cylindrical), and spirillum (spiral), including variations like spirochetes and filamentous bacteria.
Corynebacterium, Arthrobacter
group made up of 30 taxonomic families, may be very simple or complex eg C. diptheriae and C. glutamicum, the latter which produces MSG.
Mycobacteria
Rod-shaped bacteria with mycolic acids in their cell walls, including pathogens like M. tuberculosis and M. leprae causing granuloma formation.
M. leprae
Causes leprosy and is very difficult to grow in a lab, partly due to very slow growth. Can be grown in armadillo foot.
Streptomyces and Nocardia
Filamentous bacteria producing 70% of antibiotics, transitioning from spore to hyphae, found in soil.
Mycoplasmatota
Lack cell walls, include genera like Mycoplasma and Spiroplasma. Some of smallest organisms capable of autonomous growth. Animal and plant parasite. Lack key peptidoglycans
Lactobacillus and Streptococcus
Firmicutes producing lactic acid through fermentation. Can grow in pH 4 and grow in chains
Enterococcus
pathogenic Streptococcus → UTIs, bacteraemia, endocarditis, diverticulitis and meningitis
Streptococcus viridians
scarlet fever
Streptococcus pyogenes
strep throat and necrotising fasciitis
Staphylococcus
Nonsporulating Bacillales bacteria, common commensals eg S. epidermidis, with S. aureus associated with various infections and antibiotic resistance (MRSA and vancomycin resistant MRSA)
Bacillus and Clostridium
Sporulating low GC content Firmicutes found in soils
B. anthracis spore cycle
spores in soil taken up when cows consume grass → bacteria germinate and multiply, producing toxins, stress factors and spores. Spores excreted and cycle continues.
cutaneous anthrax
best prognosis, comes from infected insect bite/cut etc
pulmonary anthrax
poor prognosis, comes from inhaling spores
gastrointestinal anthrax
intermediate prognosis, comes from eating contaminated meat
vegetative B. anthracis
have both a capsule and S layer which allows them to avoid being killed
Clostridium
anaerobic, produce ATP via substrate level phosphorylation and some perform Stickland reactions - metabolism of a pair of amino acids. Found in anaerobic pockets in soil and mammalian intestinal tract
AB Toxins
Toxins with A (enzymatic) and B (binding) regions, requiring both for toxicity, working through proteolytic cleavage or separate assembly of polypeptides.
Anthrax Toxins
Primary Antigen (PA) released by B. anthracis and binds receptors, leading to LF and EF entry into cells, affecting MAPKKs, cAMP levels, and cytokine production.
EF
edema factor, remains associated with the membrane, greatly increasing cAMP conc and influencing cytokine production. May also increase host susceptibility.
LF
enters cytosol and cleaves the N terminal portion of mitogen activated protein kinase kinases (MAPKKs).
MAPKKs
involved in signalling pathways responsible for cytokine release, TNF and interleukin and induce cellular necrosis and toxin induced shock.
What happens when PA binds?
cleaved into 20 kDa and 63 kDa fragment. 63kDa fragment forms heptamer exposing LF and EF.