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Metabolism
The sum of all chemical reactions in the body, including both building (anabolism) and breaking down (catabolism).
Polymer
A large molecule made of many repeating smaller units (monomers), such as proteins or carbohydrates.
Monomer
A small building-block molecule that can join with others to form a polymer.
Hydrolysis
The process that breaks polymers into monomers by adding water (used in digestion/catabolism).
Dehydration synthesis
The process that combines monomers into polymers by removing water (used in anabolism).
Energy currency of the cell
A term referring to ATP because it stores and transfers energy for cellular processes.
Oxidation
Loss of electrons (or hydrogen); releases energy.
Reduction
Gain of electrons (or hydrogen).
Redox reaction
A paired reaction where one molecule is oxidized and another is reduced.
NAD (nicotinamide adenine dinucleotide)
A coenzyme that accepts electrons and becomes NADH.
FAD (flavin adenine dinucleotide)
Another coenzyme that accepts electrons and becomes FADH₂.
NADH / FADH₂
High-energy electron carriers used to help produce ATP.
Carry Hydrogen ions and other electrons during metabolic processes e.g. glycolysis, ETC,
Beta-oxidation
Process that breaks down fatty acids to produce energy (after lipolysis). Occurs in the mitochondria to generate acetyl-CoA.
Cortisol
Stress hormone that increases blood glucose by breaking down fats and proteins
Epinephrine (adrenaline)
Increases heart rate and stimulates energy release.
Cytokines
Signaling molecules that can promote breakdown processes during immune responses.
IGF (Insulin-like Growth Factor)
Promotes muscle and bone growth and prevents cell death, produced in the liver.
Testosterone
Increases muscle mass and bone strength.
Estrogen
Supports metabolism and fat storage.
Lipolysis
Triglycerides are broken into fatty acids + glycerol (by hydrolysis).
Chylomicron
A lipoprotein that transports dietary fats through the lymphatic system and bloodstream.
Cholecystokinin (CCK)
A digestive hormone that stimulates release of bile and pancreatic lipase and helps digest fats & proteins.
Glycerol
The backbone of triglycerides; enters glycolysis to help produce ATP.
Fatty acyl CoA
An activated fatty acid molecule that can enter β-oxidation
Carnitine
A molecule that transports fatty acids into the mitochondria.
Acetyl CoA
A key molecule that enters the Krebs cycle to produce ATP.
Ketogenesis
The process of converting excess acetyl CoA into ketone bodies when glucose is low
Ketone bodies
Alternative energy molecules produced from fat (e.g., β-hydroxybutyrate)
Starvation metabolism
A metabolic state where the body relies on fat and ketones for energy.
Acetoacetate
A ketone body that is converted into acetyl CoA during energy production.
Acetoacetyl CoA
An intermediate that splits into two acetyl CoA molecules.
Ketoacidosis
A dangerous condition where excess ketones make the blood acidic.
Acetone
A byproduct of ketone breakdown that is exhaled (causes fruity breath).
Lipogenesis
The process of converting excess glucose into fatty acids and triglycerides for storage.
Adipocytes
Fat cells that store triglycerides.
Hepatocytes
Liver cells where lipogenesis also occurs
Malonyl CoA
A molecule used to build fatty acids during lipogenesis
Citrate shuttle
A process that transports acetyl CoA out of the mitochondria for fat synthesis
Fatty acid synthesis
The building of fatty acid chains from acetyl CoA.
Energy storage
The conversion of excess nutrients into fat for later use.
Alternative fuel source
Ketones used when glucose is unavailable.
Thermoregulation
The process by which the body maintains a stable internal temperature despite changes in the environment.
Hypothalamus
The part of the brain that acts as the body’s “thermostat,” regulating temperature.
Vasodilation
Widening of blood vessels near the skin to release heat.
Vasoconstriction
Narrowing of blood vessels to conserve heat.
Thyroid hormone
A hormone that increases metabolism and heat production.
Thermoneutral environment
An environment where the body does not need to expend energy to maintain temperature.
Heat exchange
The transfer of heat between the body and the environment.
Metabolic rate
The total amount of energy the body uses compared to what it consumes
Basal metabolic rate (BMR)
The amount of energy the body uses at rest to maintain basic functions.
Energy expenditure
The total amount of energy the body uses in a day.
Postabsorptive state
The state after digestion when the body is not actively absorbing nutrients.
Lean body mass
The amount of muscle in the body, which increases metabolic rate.
Nutritional calorie
A unit of energy; the amount of heat needed to raise 1 kg of water by 1°C.
Hypervitaminosis
A condition caused by excessive vitamin intake, especially fat-soluble vitamins.
Mouth
Ingests food; begins mechanical digestion (chewing) and chemical digestion (salivary enzymes).
Pharynx
Passageway that propels food from mouth to esophagus.
Esophagus
Moves food to the stomach via peristalsis
Stomach
Churns food into chyme; begins protein digestion.
Small intestine
Main site of digestion and nutrient absorption.
Large intestine
Absorbs water/electrolytes; forms and eliminates feces.
Anus
Controls defecation (elimination of waste).
Tongue
Moves food; helps form bolus; aids swallowing.
Salivary glands
Secrete saliva to begin carbohydrate digestion.
Liver
Produces bile to emulsify fats
Gallbladder
Stores and concentrates bile; releases it into small intestine.
Pancreas
Produces digestive enzymes and bicarbonate to neutralize acid
Mucosa
Inner lining of the stomach; secretes mucus, absorbs nutrients, and protects.
Submucosa
Connective tissue layer with blood vessels, glands, and nerves. (stomach)
Muscularis externa
Smooth muscle layers that enable movement in stomach (peristalsis).
Serosa
Outer layer; reduces friction and anchors organs (part of peritoneum).
Peritoneum
Serous membrane that anchors and supports digestive organs.
Mesenteries & folds
Hold organs in place and carry blood vessels, nerves, and lymphatics.
Incisors (8 total)
Front teeth; cut and bite food.
Canines/cuspids (4 total)
Next to incisors; tear food.
Premolars/bicuspids (8 total)
Behind canines; crush and mash food.
Molars (12 total)
Back teeth; grind food thoroughly (includes wisdom teeth).
Process of swallowing
Voluntary phase (oral phase) –
Tongue pushes bolus to back of mouth into pharynx.
Pharyngeal phase (involuntary) –
Soft palate & uvula close nasal cavity.
Epiglottis covers airway (trachea) to prevent choking.
Upper esophageal sphincter relaxes to allow food into esophagus.
Esophageal phase (involuntary) –
Peristalsis moves bolus down esophagus to stomach.
Lower esophageal sphincter
Relaxes to allow entry into stomach
Cardia
Region where the esophagus connects to the stomach; entry point of food
Fundus
Dome-shaped upper portion of the stomach above the cardia
Body of the stomach
Largest central region; main site of mixing and digestion.
Pylorus
Funnel-shaped region connecting the stomach to the duodenum.
Pyloric sphincter
Ring of smooth muscle controlling the release of chyme into the duodenum
Rugae
Folds of the stomach lining that allow expansion when the stomach fills
Parietal cells
Secrete hydrochloric acid (HCl) and intrinsic factor (needed for vitamin B12 absorption).
Chief cells
Secretes pepsinogen, which is activated into pepsin for protein digestion
Mucous neck cells
Secrete acidic mucus (function not fully understood)
Enteroendocrine cells
Secrete hormones (especially gastrin) that regulate digestion
Mucosal barrier (why the stomach does not digest itself)
Protective system preventing self-digestion:
Thick bicarbonate-rich mucus neutralizes acid.
Tight junctions prevent acid leakage into tissues.
Rapid cell replacement (every 3–6 days) repairs damage.
Mixing waves
Peristaltic contractions that occur every ~20 seconds to churn food.
Chyme formation
Food mixes with gastric juices to form a semi-liquid substance.
Gastric emptying
Small amounts of chyme (≈3 mL at a time) pass through the pyloric sphincter into the duodenum.
Hydrochloric acid (HCl)
Creates acidic environment (pH 1.5–3.5)
Kills bacteria
Denatures proteins
Pepsin
Enzyme that begins protein digestion (activated from pepsinogen).
Gastric lipase
Begins triglyceride (fat) digestion
Chyme
Semi-liquid mixture of food and gastric juices.
Minimal absorption
Only small amounts (like alcohol and aspirin) are absorbed in the stomach.
Hepatocytes
Main liver cells; process nutrients and produce bile.
Hepatic sinusoids
Porous capillaries for blood flow and exchange.