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GI tract
extends from mouth to anus, direct contact with food
accessory organs
do not directly contact food
salivary glands, liver, gallbladder
mucosa-associated lymphoid tissue (MALT)
tonsils, appendix, Peyer’s patches
“sample” the environment by phagocytosis; present findings to lymphocytes
microbiome
most diverse and densely populated part of the body, plays an essential role in our health and in disease
mild symptoms of a GI infection
diarrhea
gastritis→ inflammation of the stomach
enteritis→ inflammation of intestines
gastroenteritis→ inflammation of stomach and intestines
severe symptoms of a GI infection
dysentery→ infectious gastroenteritis w/ abdominal pain
hypovolemic shock→ low blood volume or blood loss from severe dehydration
dental plaques
Biofilms of Streptococcus mutans, which attach to the tooth
Carbohydrate-dependent; sucrose is cariogenic (good at forming dental caries)
Fermentation of sugar leads to acid production
viral gastroenteritis
sudden onset: watery diarrhea, nausea/vomiting, cramps, bloating
Complications: dehydration; severe cases occur in very young and elderly individuals
spreads via the fecal-oral route
rotavirus
common in babies and infants in the fall and winter
norovirus
adult infection, responsible for outbreaks (cruise ships, schools)
hepatitis
inflammation of the liver, caused by non-related viruses
hepatitis A virus
Fecal-oral transmission, usually an acute infection (symptoms within a short amt of time)
hepatitis B virus
spreads through direct contact with infected body fluids
acute infection→ 50% of cases are asymptomatic but infectious
chronic infection→ after 6 months of no symptoms; continued presence of the infectious antigen in the blood
lifelong infectious illness leads to scarring of the liver (cirrhosis)
hepatitis C virus
DNA virus; transmitted by blood-to-blood contact (intravenous drugs)
acute→ usually undiagnosed; antivirals effective
chronic→ 50% of individuals do not know they are infected; accumulation of liver damage occurs
no vaccine available
hepatitis D virus
Can’t replicate on its own (needs Hep B to hitch a ride)
fecal-oral transmission
helicobacter pylori
Gram-negative, curved rod; transmitted person-to-person via saliva
produces urease; leads to peptic ulcer disease; treated with antibiotics
foodbourne infection
After ingestion of the pathogen, colonization occurs, disease acts in days to weeks
food poisoning
Driven by ingestion of toxin, acts immediately
staphylococcal food poisoning
ingestion of endotoxin produced by S. aureus; rapid onset (within a few hours)
listeriosis
listeria monogenous (gram positive bacilli) from unpasteurized dairy products
Clostridium perfringens gastroenteritis
Gram-positive bacilli that form endospores, from meats and meat stews that are contaminated
campylobacter jejuni
Gram-negative, leading cause of diarrhea in the US, bacteria burrow into the epithelial cells of the intestines
Guillain-Barré syndrome → rare autoimmune disease b/c surface of the pathogen resembles lipids seen in the nervous system
bacterial dysentary
In severe cases causes stool w/ mucus and blood
The shiga toxin disrupts protein synthesis in the host cell, killing it
escheria coli gastroenteritis
Gram-negative bacilli, caused by enterotoxin found in water, vegetation, and soil
enteropathogenic E. coli (EPEC)
major cause of diarrhea in developing countries, fatal in infants
enteroinvasive e. coli (EIEC)
likes to get into the cell, similar to shigella
enterotoxigenic e. coli (ETEC)
secretes an exotoxin that causes diarrhea, fatal for children under 5
enterohemorrhagic E, coli (EHEC)
cause of serious outbreaks, shiga-toxin-producing E. coli
e. coli 0157: H7
progresses to severe bloody diarrhea, hemolytic uremic syndrome, do NOT use antibiotics, leads to a massive release of toxin when cell lysis occurs
salmonella gastroenteritis
causes by s. enterica which is found in raw eggs and poultry
s. typhi
causes typhoid fever
Clostridioides difficle
Gram-positive, healthcare-acquired infection
develops following antibiotic treatment
can progress to pseudomembranous colitis (colon inflammation)
treated by fecal transplant
Giardia lamblia - giardiasis
Cysts are ingested, and trophozoites are released
Drink purified water to prevent
does NOT grow on blood agar
cryptosporidiosis
Ingestion of oocysts found in contaminated water
Swimming pool chlorination is not effective
fecal-oral transmission