PMCY 4020: Digestive System

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Last updated 9:41 PM on 4/26/26
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30 Terms

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Intro to Digestive System

  • Macromolecules too large to cross intestinal epithelium so must be broken down into monomers to be absorbed (through HYDROLYSIS reactions)

    • Hydrolysis reactions: carbs are hydrophilic, lipids are hydrophobic and form large fat droplets (requires bile emulsification)

  • Digestive enzymes confined to lumen of GI tract - avoid digesting your own tissues

  • CLINICAL: pancreatitis - inflammation of pancreas due to premature activation of digestive enzymes → leads to autodigestion, abdominal pain, and tenderness

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Digestive System: Important Concepts

  • Lumen opens at both ends (mouth/anus) → continuous w/ environment

  • Digestion occurs OUTSIDE the body → harsh environment

  • Permit one-way transport: different regions of GI tract are specialized in different functions

  • Indigestible materials pass from one end to the other w/o crossing epithelial lining of GI tract

  • CLINICAL: Acute Oral Intoxications (activated charcoal to clean stomach)

    • Mechanism: porous form of carbon that binds toxins in GI tract to prevent absorption (toxin charcoal stays in gut and excreted)

    • Limitations: most effective within 1 hr of toxin ingestion, not effective for all substances, risk of vomiting and aspiration

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Digestive System Parts

Two functional parts: tubular alimentary/gastrointestinal (GI) tract and accessory digestive organs

GI tract (30 ft): oral cavity, pharynx, esophagus, stomach, small intestine, large intestine, anus
Accessory digestive organs: teeth, tongue, salivary glands, liver, gallbladder, and pancreas

Digestion requires sufficient time of contact between food and active digestive enzymes

  • Mastication and oral deglutition phase: secs to mins

    • Salivary amylase (active)

    • Lingual lipase (active, no bile)

  • Pharyngeal: 1 sec

  • Esophageal: 5 secs

  • Stomach: hours

    • Salivary amylase (inactive)

    • Lingual lipase (active, no bile)

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Layers of GI Tract

  • 4 layers/tunics

    • Each layer contains a dominant tissue type that performs specific functions in the digestive system

    • Inner to outer: mucosa, submucosa, muscularis, serosa

layers not identical or complete in all regions of GI tract

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Layer of GI Tract (Mucosa)

  • Protection, digestion, and absorption

  • Lines the lumen, contains villi and lacteals, has 3 sublayers:

  • 1) Epithelium: adjacent cells sealed together by tight junctions w/ channels for selected ideas (can be 2 types)

    • Stratified squamous: mouth, esophagus, anus → protection against friction

    • Simple columnar: rest of GI tract → secretion of mucus and digestive enzymes

  • 2) Lamina propria: thin layer of connective tissue contains lymph nodules and capillaries

  • 3) Muscularis mucosae: thin layer of smooth muscle that moves the mucosa to enhance contact with contents

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Layer of GI Tract (Submucosa)

  • Structure, flexibility, and vessel supply

  • Dense irregular connective tissue

  • Highly vascular layer that serves the mucosa

  • Absorbed molecules that pass through the columnar epithelium enter the blood and lymphatic vessels of the submucosa

  • Contain the submucosal plexus (Meissner’s plexus), part of enteric nervous system that provides nerve supply to Muscularis mucosae

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Layer of GI Tract (Muscularis)

  • Major movements

  • Composed of inner circular and outer longitudinal layers of smooth muscle

  • Responsible for segmental contractions (pulverization and mixing) and peristallic movement (propelling)

  • Myenteric plexus (Auerbach’s plexus) located b/w 2 muscle layers provides nerve supply

    • Includes fibers and ganglia from both sympathetic/parasympathetic systems

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Layer of GI Tract (Serosa)

  • Protection, structure, and lubrication

  • Composed by a thin layer of loose connective tissue covered by simple squamous epithelium (mesothelium)

  • Mesothelial cells are specialized to secrete watery (serous) fluid into peritoneal cavity

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Oral Cavity

  • Mechanical and chemical processing of food

  • Formation of food bolus

  • Teeth:

    • Incisors: sharp; cutting/slicing food

    • Canines: pointed; tearing/ripping food

    • Premolars/molars: flat surface; crushing/grinding food

  • Tongue:

    • Moves food around for effective mastication (chewing) and to create food bolus (mix w/ saliva)

    • Pushes food toward oropharynx (voluntary phase of swallowing)

    • Ebner’s glands = secretion of lingual lipase → begins lipid digestion (very limited action)

  • Salivary glands:

    • Parotid glands: produces 25% of saliva, watery and rich in salivary amylase (ptyalin) → starch digestion

    • Submandibular glands: produce 70% of saliva, mixed (watery and mucous) secretion

    • Sublingual glands: produce 5% of saliva, rich in mucins for thick/lubricating saliva

    • Tastants must be dissolved in saliva to interact w/ taste receptors

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Mastication and Food Bolus

  • Mechanical breakdown of food in mouth into small pieces, mixing w/ saliva to form soft food bolus reading for swallowing

  • Food bolus: round mass to be swallowing

  • Saliva composition:

    • Salivary amylase: starch digestion

    • Lingual lipase: fat digestion (limited)

    • Mucins: lubricate food

    • Lysozyme and IgA: antimicrobial defense

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Pharynx and Esophagus

Transportation to right place

Pharynx:

  • Connects nasal and oral cavities to larynx and esophagus

  • 3 parts:

    • Nasopharynx: air only

    • Oropharynx and laryngopharynx (hypopharynx): air and food

Esophagus:

  • Conduction tube that transport food and liquids from pharynx to stomach

  • Esophageal peristalsis (involuntary):

    • Muscle contraction behind bolus

    • Muscle relaxation ahead of bolus to allow passage

    • Secondary peristalsis

  • Peristaltic reflex:

    • Stretch receptors of sensory neurons in wall detect distension and send signals to myenteric plexus that coordinates movement

  • Upper esophageal sphincter (UES) and lower esophageal sphincter (LES)

    • Contracted to prevent air from entering gastric reflux

    • Relax during swallowing

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Swallowing/Deglutition

  • 3 phases: oral, pharyngeal, and esophageal

  • Oral phase = voluntary control

  • Pharyngeal, esophageal = automatic, controlled by swallowing center in brain stem

  • Receptors in posterior portion of oral cavity and oropharynx stimulate pharyngeal phase of swallowing reflex:

    • Soft palate lifts to close nasopharynx

    • Epiglottis covers windpipe

    • Upper esophageal sphincter relaxes

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GI Tract - Stomach

Processes food with HCl and enzymes, forming chyme

  • J shaped organ b/w esophagus and duodenum

  • Functions: store food, digest proteins, kill pathogens w/ acidity of gastric juice, move food to small intestine as material called chyme

    • Chyme = semi-fluid very acidic mixture

  • 3 layers:

    • Longitudinal muscle: propels contents forward toward duodenum

    • Circular muscle: mixes food w/ gastric juice

    • Oblique muscle: generates twisting force for grinding food

  • Gastric rugae = visible folds of mucosa and submucosa that line inner stomach

    • Empty vs filled w/ food: great expansion capacity w/o rise in pressure

  • Gastric pits = microscopic indentations in mucosal surface

    • Each pit leads to gastric glands that contain several types of cells to secrete different products

      • Chief cells: secrete pepsinogen (inactive precursor of pepsin) and produce gastric lipase

      • Parietal cells: secrete HCl (maintains stomach acidity, kills pathogens, activates pepsinogen into pepsin → begins protein digestion (partial))

        • Secrete intrinsic factor (glycoprotein), essential for vitamin B12 absorption

      • Mucous cells: secrete mucus (+bicarbonate) to protect gastric lining from pepsin and acidic environment

      • Enterochromaffin-like (ECL) cells: secrete histamine (stimulates HCl secretion from parietal cells) and serotonin (inc gut motility)

      • G cells: secrete hormone gastrin - acid secretion and gastric motility

      • D cells: secrete hormone somatostatin - inhibits acid secretion and motility

      • PD1 cells: secrete hormone ghrelin - stimulates appetite

    • Secretion of gastric cells together w/ large amounts of water form highly acidic solution known as GASTRIC JUICE

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Parietal Cells HCl Secretion

  • Specialized apical region

  • High levels of carbonic anhydrase (CA)

  • Basolateral membrances take in Cl- (bicarbonate leaves cell) that diffuses to lumen

  • H+ secreted into gastric lumen by active transport using H+/K+ ATPase pumps

  • Potassium recycling: K+ leaks out through K+ channels to prevent depletion in gastric lumen

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Digestion in Stomach

  • Proteins partially digested in stomach by pepsin

  • Starch digestion begins in mouth w/ salivary amylase but enzyme becomes inactivated by strong acidity of gastric juice

  • Bile salts not present in stomach to help w/ digestion of fats

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GI Tract - Small Intestine

Extensive digestion and absorption of nutrients from chyme

Divided into duodenum, jejunum, and ileum

Components released:

  • Pancreatic juice from pancreas:

    • Sodium bicarbonate to neutralize stomach acid

    • Several digestive enzymes: pancreatic amylase, trypsinogen, nucleases, pancreatic lipase → activated by enterokinases

  • Bile salts produced in liver and stored in gallbladder:

    • Functions as detergents for fat emulsification

Brush border enzymes

  • Enzymes located on membrane of microvilli in small intestine

  • Not secreted into lumen, remain attached to plasma membrane

  • Ex:

    • Peptidases -digest peptides into amino acids

    • Enterokinase/Enteropeptidase - activates trypsinogen into trypsin to digest peptides

    • Maltase, sucrase, and lactase - digest carbohydrates

  • Enzyme and substrate must get in contact

Intestinal motility

  • Slow - for proper digestion and absorption of nutrients

  • Peristalsis much weaker in small intestine compared to esophagus/stomach

  • Segmentation:

    • Alternating contractions of circular muscle segments at different sites

    • Contents pushed back and forth, creating local mixing w/o net forward movement

  • Contractions of intestinal smooth muscle (automatic and rhythmic)

    • Rhythmicity generated by pacemaker cells known as interstitial cells of cajal (ICCs)

      • ICCs produce electrical “slow waves” that spread only short distance and must be regenerated by next pacemaker reigon

      • ANS modulates muscle depolarization

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Fat Emulsification

  • Lipases can only act on surface of fat droplets (not inside)

  • Bile salts are amphipathic (hydrophilic/phobic) molecules - stabilize fat droplets in aq soln (surround them)

  • Emulsification → large surface area

  • Lipase digests triglycerides → monoglycerides and fatty acids which diffuse into epithelial cells

  • Once absorbed, fatty acids recombine and mix with cholestrol and lipoproteins = chylomicrons (large)

    • Reassembled back into triglycerides and packaged

  • Fat absorbed into intestinal lacteals (lymphatic vessels), not into blood capillaries (too tight for chylomicrons)

    • Lacteals have more permeable endothelium (special lymph vessels in intestine) and accepts large particles

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Gallbladder Removed

Gallstones: solid particles formed from excess cholesterol and/or bilirubin in bile

  • Severe abdominal pain and inc risk for infection

Intestine receives steady trickle of dilute bile rather than large bursts during meals

  • Makes fat digestion less efficient, especially after large or fatty meals

  • Deficiencies of fat-soluble vitamins

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GI Tract - Large Intestine

Absorption of water and electrolytes from chyme

Divided into cecum, ascending colon, transverse colon, descending colon, sigmoid colon, rectum

Colon:

  • Epithelium has transporters for Na, Cl, H2O

  • Diarrhea vs constipation

  • Gut microbiome/Microflora

    • Microorganisms w/ biomass greater than 1.5 kg

Rectum:

  • Feces storage until elimination

  • Stretch receptors in rectal walls detect distension from fecal mass and send signals to brain, initiating urge to defecate

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Gut Microbiome/Microflora

Gut microorganisms:

  • Produce vitamin K, some B, and short chain fatty acids (SCFAs)

  • Break down dietary fibers that humans can’t digest (pectins, beta glucans)

  • Compete w/ harmful bacteria

  • Support immune system

When does microbiome form?

  • At birth (delivery method dependent)

    • Vaginal birth: newborn immediately colonized by vaginal and intestinal microbes from mother

    • C-section: colonization comes mainly from skin and hospital environment microbes → altered metabolic and immune profiles

  • Breastfeeding vs formula feeding

  • Early childhood diet and exposure to pets, rural environments, and antibiotics affect microbial diversity and immune tolerance

  • 0-3 years CRITICAL PERIOD

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GI Tract - Anus

Defecation control

Controlled by 2 sphincters:

  • Internal anal sphincter - involuntary, smooth muscle

  • External anal sphincter - voluntary, skeletal muscle

  • Ensures defecation when appropriate

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Accessory Organ - Liver

  • Heaviest internal organ, upper right abdomen

  • Nutrient rich blood from gut passes through liver first → portal system

  • Metabolization and detoxification of compounds

  • Risk of liver damage

  • Liver lobule - basic structural and functional unit of liver:

    • Hepatocytes: main functional cells → removes toxins, process medications, store nutrients, secrete bile salts

  • Bile canaliculus → bile duct

  • Other cells: Kupffer cells (immune system), stellate cells (vitamin A storage)


Core roles: metabolism, detoxification, exocrine secretion

1) Metabolism

  • Stores glucose and releases when needed

  • Synthesizes, breaks down, packages fats for transports

  • Converts ammonia into urea

  • Bilirubin metabolism

  • Produces essential plasma proteins (albumin and most clotting factors)

2) Detoxification

  • Uses CYP450 enzymes to modify drugs, toxins, hormones

  • Converts nonpolar molecules into polar for kidney excretion (blood toxification)

  • Kupffer cells clear pathogens and debris

3) Exocrine function

  • Bile production

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First-Pass Metabolism of Drugs

Orally taken drugs encounter CYP450

  • Bioavaliability is fraction of administered drug dose that reaches the systemic circulation in an unchanged form

  • Can be altered by liver diseases and enzyme inhibitors or inducers (drug interactions)

  • Route of administration can bypass it (sublingual, transdermal, rectal, inhaled, IV, IM, SC)

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Bile Production

  • Made of bile pigment (bilirubin), bile salts, phospholipids, cholesterol, inorganic ions

  • Essential for digestion of fats

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Accessory Organ - Liver (2)

  • Regenerative capacity

  • Injury → hepatocytes re-enter cell cycle → divide to restore liver mass

  • Require mass gained → proliferation stops (functional sufficiency and spatial constraints)

  • Tumor removal, living-donor transplants

  • Chronic injury leads to fibrosis and cirrhosis

    • Alcohol, hepatitis, toxins

    • Stellate cells transform into myofibroblast like cells: produce collagen and create scar tissue

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Pancreas: Amphicrine Gland

Exocrine pancreas (98%): composed by acinar cells (amylases, proteases, lipases, nucleases) and ductal cells (bicarbonate)

Endocrine pancreas (2%): mainly alpha and beta cells → islets of langerhans

  • Alpha cells (25%) secrete hormone glucagon → inc blood glucose

  • Beta cells (70%) secrete hormone insulin → dec blood glucose

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Cells Take Up Glucose

  • Glucose requires GLUT transporters to enter cells

  • Skeletal muscle and adipose tissue contain GLUT4: insulin-dependent

  • Liver and pancreas use GLUT2: insulin-independent (allowing sensing of glucose)

  • Brain and smooth muscle use GLUT 1/3: insulin-independent

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Insulin

  • Secreted in response to high blood glucose (after meals)

  • Translocates GLUT4 transporters from cytoplasm to membrane of cells

  • Promotes storage and anabolism

    • Glycogen synthesis

    • Inhibits hepatic glucose production (gluconeogenesis and glycogenolysis)

    • Stimulates fat storage (lipogenesis) and inhibits lipolysis in adipose tissue

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Glucagon

  • Secreted when glucose is low (fasting, sleeping)

  • Raises blood glucose by mobilizing stored energy

    • inc glycogenolysis and gluconeogenesis

  • 2 ways to regulate glucagon release:

    • In fed state, insulin suppresses alpha cells and when glucose drops, removal of inhibition of alpha cells

    • Over depolarization inhibits glucagon release

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Clinical App: Diabetes Mellitus

  • Disease where body does not produce enough amount of insulin or doesn’t respond normally to insulin

  • Type 1 diabetes: destruction of pancreatic beta cells, insulin deficiency

  • Type 2 diabetes: desensitization of insulin receptors

    • Accumulation of glucose in blood (hyperglycemia) while lacking in cells