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Class Aves
All birds

Subclass Archaeornithes
Extinct birds that lived in Mesozoic Era (250-65 mya); first birds ~150 mya
First birds had long tails with at least 13 caudal vertebrae
Metacarpals were separate and with claws and teeth in the bill
e.g., Achaeopteryx lithographica

Subclass Neornithes
includes some extinct and all extant birds
tail usually ends in pygostyle
most without teeth in bill
usually a well-developed sternum
e.g., Gallus gallus

Superorder Palaeognathae (of subclass Neornithes)
large flightless birds (some extinct such as elephant birds and moas)
living ratites: ostrich, rhea, emu, kiwi, cassowary, tinamous


Superorder Neognathae (of subclass Neornithes)
modern flying birds
1st modern bird, “wonderchicken”, evolved about 67 mya
Neognathae divided into two clades:
Galloanserae (fowl)
Neoaves (all other modern birds)


Distinguishing features of birds
feathers (shared with extinct dinosaurs)
toothless bill (or beak)
pneumatized bones (contain air-filled cavities)
fused clavicles to form furcula
deeply keeled sternum
pygostyle (short tail bone)

What are birds most closely related to?
clear evidence of bird-reptile relationship
e.g., the transitional fossil Archaeopteryx lithographica

Reptile features of Archaeopteryx:
jaws with teeth
separate metacarpals
separate pelvic bones
23 caudal vertebrate
small, flat sternum
rib cage lack uncinate process
small braincase

Bird features of Archaeopteryx
asymmetrical feathers
3 metacarpals
semilunate carpal (wrist)
clavicles fused (making a furcula)
4 phalanges including backward-facing hallux

Archaeopteryx has connections between birds and reptiles, but which reptiles?
therapod ancestry


Therapods (saurischian dinosaur)
bipedal
carnivores
hollow bones
small forelimbs
e.g., Deinonychus, Velociraptor, and Tyrannosaurs
Major clues to birds’ therapod ancestry
skeletal features
3 toes (phalanges) with elongated, fused metatarsals (leg bones)
3 metacarpals with 2nd digit the largest
half-moon shaped (semilunate) wrist bone
large eye socket
pneumatized (hollow) bones
long s-shaped neck
fused clavicles (to form a furcula)
backward-facing pubis (in advanced therapods)
non-skeletal features
reproductive behaviors
eggs laid over several days
eggs incubated at a nest
eggs with two-layered (inner is crystalline and is porous)
feathers
use of air sacs for respiration
similar collagen protein in connective tissue
Natural selection
Process in which the frequency of traits changes in a population due to differential reproductive success among individuals
Three conditions necessary for natural selection to act
in a population
individuals in a population express variation in traits
variation in traits among individuals is passed from parents to offspring (= heritability)
individuals produce different numbers of offspring as a result of variation (i.e., differential reproductive success because of variation)
How can natural selection be tested?
by demonstrating that all 3 necessary conditions are met
e.g., beak depth in Medium Ground Finches on Daphne


Natural Selection in medium ground finches
captured and measured individuals to show variation among individuals for beak depth
heritability shown as a positive association between beak depth of parents and offspring
cross-fostering experiments demonstrate heritability if:
no relationship between traits of offspring and foster parents
but a positive relationship between traits of offspring and biological parents
observed differences in reproductive success among individuals of population associated with variation in beak depth
about 84% of finches died during 1977 drought
number of seeds greatly reduced; only large, hard seeds available during drought
birds surviving drought were larger and had deeper beaks on average

What is the main process that produces new species?
Natural selection
Species
Population(s) whose members interbreed freely in nature and fail to do so with other populations
True species
Populations that are reproductively isolated; they fail to produce hybrids under natural conditions
Hybrids
Offspring of parents that are genetically dissimilar, particularly parents belonging to different species
Speciation
fundamental changes in populations
Speciation is a 2-step process:
genetic isolation: gene flow must be restricted between two populations (i.e., no exchange of alleles)
genetic divergence: evolutionary forces act independently in the two populations
e.g., traits evolve in each population as adaptations to their own environment; as a side effect, these traits also prevent populations from exchanging alleles

Allopatric speciation
geographic barriers create genetic isolation
e.g., allopatric speciation by vicariance: trumpeters in S.A.
large ground birds that fly only short distances
phylogeny reconstructed based on DNA similarities
speciation events corresponded closely with geological events (e.g., formation of Andes Mountains and Amazon River)

Allopatric speciation by dispersal
e.g., Eurasian Greenish Warblers
originated south of Tibetan Plateau; gradually expanded northeast and northwest
populations vary, but interbreed freely until Siberian (called a ring species)
Siberian populations genetically morphologically distinct; rarely interbreed

Evolution of feathers
feathers once thought to be unique bird trait, but many therapod dinosaurs also had feathers
appearance of feathers in therapods suggests feathers evolved for reasons other than flight

Major functions of bird feathers
flight
water proofing
insulation
communication
predator (cryptic plumage)
tactile structures (e.g., in Order Caprimulgiformes)
physical support (e.g., stiff feathers in woodpeckers)
Feather composition and structure
composed of b-keratin (similar to protein of our finger nails)
arise from follicles in the epidermis; inert at maturity
central shaft composed of:
quill or calamus (bare, proximal)
rachis (surrounded by vane, distal)
broad, flexible vanes on either side of rachis can be:
plumulaceous (fluffy)
pennaceous (stiff)

Detailed structure of vane
barbs run perpendicular to the rachis
each barb is composed of perpendicular barbules
barbules contain barbicels that interlock adjacent barbs

Major types of feathers
remiges
flight (wing) feathers: primaries, secondaries, and tertials (coverts and alula are not remiges)
retrices
tail feathers
contours
feathers that cover the outer body
vane has pennaceous and plumulaceous portions

Major types of feathers
bristles
long, hair-like sensory feathers near the mouth
filoplume
long, sensory feather of body; detect position of other feathers

Major types of feathers
down
feathers close to the body that insulate it
have entirely plumulaceous vanes
nestlings initially covered in down feathers
semiplume
intermediate between down and contour feather
provides insulation and form


Feather care
birds preen feathers to maintain them
use bills to reposition out-of-place feathers
pull remiges and retrices through bill to restore connections between barbicels
preen wax applied to feathers
secretions of uropygial (preengland located on rump
waxes (fatty acids + alcohols)
waterproofs feathers
may inhibit growth feather-degrading bacteria
Feather distribution
feathers occur in tracts separated by bare skin
pterylae = feather tracts
apteria = patches of bare skin
patterns of apteria differ among bird taxa
brood patches are specialized apteria with dense blood vessels; used for incubation

What causes bird feathers to be so vibrant and varied?
pigments or structural features in the feathers
Pigments
found in rachis, barbs, and barbules
absorb certain wavelengths of light and reflect the colors we see
Common pigments in bird plumage
melanin:
produces black, browns, tans, red-browns, and grays
associated with extra deposits of keratin which strengthens feathers
often found at the tips of primaries (remiges), particularly in white birds (e.g., gulls)

Common pigments in bird plumage
carotenoids:
produces bright yellow to red colors
birds cannot synthesize carotenoids; obtained in diet (fruits, seeds)
carotenoid-produced colors are often important in mate choice
combination of melanin and carotenoids produce olive-green color

Structural colors
blue and white feathers are produced as light is reflected by scattered keratin proteins and melanin layers in the feathers
different arrangements of keratin causes reflection of different wavelengths of light
Iridescence
describes metallic blues, greens, reds, and golds
different layers of keratin and melanin reflect different wavelengths of light; color we see depends on angle of light

Feather molting
Because of physical wear, feathers must be replaced periodically
molting: process of shedding and replacing feathers
frequency and extent of molts depends on life history (e.g., migratory or resident)
most N. American birds molt twice per year
flight and body feathers in late summer (into basic or winter plumage)
some body feathers in early spring (into alternate or breeding plumage)
Typical feather-molting pattern for NA songbirds
Natal down (june) —-prejuvenile molt—> Juvenile plumage (july-august) ——1st prebasic molt (incomplete)——> basic plumage (august-march) ——-prealternate molt—→ alternate plumage (may-august) ——prebasic molt (complete; all flight feathers are replaced)——> basic plumage (september-march)

Four forces of flight
lift (upward)
thrust (forward)
weight (downward)
drag (backward)
to maintain level flight, birds must maintain all forces in balance

Airfoil
Wings act as airfoils to produce lift
airfoil = shape that produces a laminar (parallel) flow of air across its surface
differences in air pressure above and below the wing (or any airfoil) produce lift
air moves faster above the wing than below
faster-moving air creates less pressure; difference in pressure above and below wing is lift


Lift
Lift is produced by wings
but birds do not need to “flap” to create lift
wing shape (i.e., airfoil) is sufficient if air moves fast enough across the wing surfaces (more air speed, more lift)
for birds to stay aloft, force of lift > weight
birds evolved many weight-reducing adaptations:
hollow (pneumatized) bones; sometimes with internal “struts”
fused bones (e.g., metacarpals)
lightweight, stiff wing feathers
lightweight, toothless bill
movement of air along surface of wing causes lift
changing angle of attack alters the amount of lift

Lift
Lift is produced by wings
if trailing edge of wing is pointed down (large angle of attack), air does not move along entire wing surface
air swirls at the back of wing, causing more drag and loss of lift (aerial stall)
to perch, birds adjust wing angle to create an aerial stall
wing shape also influences lift (high aspect ratio wings produce more lift)

Forward motion requires thrust
as front of wing oriented slightly downward (low angle of attack), lift is converted to thrust (without flapping)
thrust also generated by flapping
flapping involves:
up-down motion by secondaries
twisting motion by primaries
folding of wing on the upstroke to reduce drag

Flight adaptations
airfoil-shaped wings
lightweight skeleton
coracoid bone that supports shoulder
enlarged sternum with deep keel for attachment of muscles
furcula that acts as a spring for wing beat
efficient respiratory system to supply O2 to muscles

Key musculoskeletal structures
bones:
furcula: acts as strut connecting shoulders
coracoid: connects sternum to shoulder
humerus: upper bone in wing; connects to coracoid and scapula
sternum: where breast muscles attach
muscles:
attached to sternum and humerus by tendons
pectoralis (major): contracts to pull wing
supracoracoides: contracts to lift wings


Avian respiratory system
flight is energetically expensive
O2 needed to convert food into ATP for muscle contraction
birds have higher metabolism, higher body temps, and faster heart rates than other terrestrial vertebrates
birds also have most efficient respiratory system

Lungs
small, but with large internal surface area
network of tiny tubes (parabronchi), each has many capillaries for gas exchange
direction of air is perpendicular to flow of blood in capillaries –> crosscurrent gas exchange


Cross-current gas exchange
maintains a favorable concentration gradient of O2 across entire parabronchus
Air sacs
1-way flow of air occurs because of anterior and posterior air sacs

Movement of air in avian respiratory system
complete cycle of respiration:
1st inhale: air goes into posterior air sacs
1st exhale: air into parabronchi for gas exchange
2nd inhale: air moves into anterior air sacs
2nd exhale: air moves out of bird

Major adaptations of avian respiratory system
movement of air between air sacs and lungs (1-way)
cross-current gas (O2 and CO2) exchange in the lungs
Migration
regular seasonal movement between breeding and wintering regions
most temperate birds migrate
most birds that breed in this region are Neotropical migrants
distance of migration varies within and among species
migration can be obligate or facultative
Types of migration
partial migration = some individuals of population migrate, others are resident year round
differential migration = different sex-age classes of population migrate different distances
altitudinal migration = migrate up and down mountains
irruptions = migration only in some years; respond to unpredictable resources
Species w/ irruptive movements

Timing of migration
“internal rhythms” govern timing of migration
zugunruhe: migratory restlessness, the preparation for migration
increased activity near dusk; normal sleep pattern changes; increased feeding
ultimately controlled by changes in daylength, but immediate weather conditions influence exact timing of movement
Timing of migration pt.2
migratory fattening is part of zugunruhe
fat is major fuel for migrants because it provides the most energy per gram
long-distance migrants: 30-50% of total body weight (tbw) in fat
short-distance migrants: 10-25% of tbw in fat
non-migratory: 3-5% tbw in fat; except in winter when they store 10-15%, enough to survive 1-2 days
Terms to describe movements during migration
orientation: flight in proper compass direction
navigation: knowing where you are and how to get to a specific geographic location
generally, orientation is genetically determined, but navigation involves some learning
e.g., experiments with displaced juvenile vs. adult migratory European Starlings
Perdeck’s (1958) classic experiment
displaced 11,000 starlings during migration (C to R1, R2 and R3)
most young starlings (black circles) oriented in direction (and for same distance) as they normally would have, but ended up in an incorrect wintering location
most adults (yellow) navigated to correct wintering sites

Orientation cues
visual cues
diurnal migrants may use landmarks (e.g., rivers, coasts)
likely cue used by Orders Anseriformes, some Apodiformes, Gruiformes, Accipitriformes, Falconiformes
e.g., whooping cranes learn landmarks during migration; follow older birds initially
but ... visually impaired pigeons can still navigate; suggests other cues are used by most other birds

Orientation cues
olfactory cues
follow concentration gradients of odors
used by seabirds (e.g., Procellariiformes) to locate nest sites and food
e.g., petrels with severed olfactory nerves could not find nest site

Orientation cues
time-compensated sun compass
position of sun in sky indicates compass direction
requires that birds compensate for changing position of sun (changes ~ 15o per hour during the day
shifting bird’s internal clock (making it “think” it’s a different time) causes incorrect orientation


Orientation cues
Celestial cues
use rotation of stars around Polaris to orient
cue used by nocturnal migrants (e.g., migratory songbirds)
e.g., Emlen (1967)
young indigo buntings placed in Emlen funnels and moved to planetarium after 1 of 3 rearing conditions:
no view of night sky
view of correct night sky (with rotation around Polaris)
view of incorrect night sky (rotation around Betelgeus in Orion constellation)

Results of Emlen (1967)
Indigo Buntings (INBUs) with no view of night sky showed no orientation; moved in random directions
INBUs with view of simulated night sky oriented properly; flew opposite Polaris (during fall migration)
INBUs with view of incorrect night sky oriented incorrectly; flew opposite Betelgeuse

Orientation cues
Geomagnetic cues
birds use Earth’s magnetic field
flow of liquid iron in Earth's core creates electric currents, which in turn creates the magnetic field
stronger magnetic “pull” at poles than toward the equator
cryptochrome 4 protein (cry4) is molecule that is sensitive to blue light and allows birds to “see” the magnetic field
cry4 proteins may produce a geomagnetic “filter” (top panel of figure) over a bird’s field of view (bottom panel)


Orientation cues
Polarized light cues
pattern of polarized light at sunset used to set N-S compass
polarized light travels in one plane; caused by reflection off surfaces and scattering by atmosphere
direct sunlight is unpolarized
How migrating birds appear to use polarized light
maximum polarization occurs in a band 90° from the sun
at noon, maximum polarization is a band around the horizon (A)
at dusk and dawn, maximum polarization is band defined by the North-Zenith-South plane (B)
nocturnal migrants start migration shortly after sunset and end at dawn
Muheim et al. (2006) suggest birds calibrate their magnetic compass based on averaged polarized light patterns at sunset and sunrise
when sparrows exposed to artificial polarized light in East-West arc
birds recalibrated their North-South axis based on the artificial polarized light

Orientation and navigation in birds, what’s learned, what’s innate?
genetically controlled:
zugunruhe
pace and duration of migration
ability to use geomagnetic compass and polarized light to orient
learned
how to use solar compass, celestial compass, olfactory cues, and possibly visual landmarks (learned during initial migration)
if pigeons wear magnets on first homing flight (altering their sense of geomagnetic field), they are unable to navigate correctly thereafter
Sex determination
sex is determined genetically
males are homogametic (ZZ)
females are heterogametic (ZW)
sex-specific development of song is associated with Z-linked gene in songbirds
singing controlled by high vocal center (HVC)
HVC is larger in male brains; occurs early in development
HVC development caused by z-linked gene for receptor of neurotransmitter (called brain-derived neurotrophic factor, BDNF)

Male reproductive system
paired testes; shrink after breeding
no true external genitalia in most species; males have swollen cloacal protuberance
copulation occurs with cloacal (vent) contact

Female reproductive system
single (left) ovary, except raptors
ovary larger in breeding season than in non-breeding season


Egg structure
eggs develop in 24 hours; 1 egg/day
embryo develops on top of yolk
yolk is rich in fat, protein, and other nutrients
albumen: water supply, shock absorber, prevents rapid cooling of egg when not being incubated
3-layed shell:
hard outer layer is calcium carbonate embedded in a collagen lattice
2 inner membranes to which shell adheres

Egg extraembryonic membranes
amnion: surrounds embryo; holds amniotic fluid in which embryo sits
chorion: surrounds embryo and yolk; functions in gas exchange
allantois: sac growing from embryo that fuses with chorion for gas exchange and stores uric acid (waste) produced by the embryo
yolk sac: vascularize membrane around yolk; aids in absorption of nutrients from yolk

Egg laying
egg-laying interval constrained:
time required to produce the egg (about 24 hours)
need to reduce weight for flight
can adjust egg size and number
increase volume of eggs when mated with low-quality male
clutch sizes vary between and within species
clutch size should maximize lifetime reproductive success

Egg coloration
primary explanation for many egg colors and patterns:
camouflage
generally, nests in cavities have white eggs, whereas open nests are cryptically patterned
but... too many exceptions to be the only explanation
other explanations for many egg colors and patterns:
signal of female quality (e.g., Pied Flycatcher egg brightness associated with immunocompetence)

Brood parasitism
within species (e.g., egg dumping in ducks) or between species (e.g., cowbirds and cuckoos laying in “host” nests)
egg dumping: deposit 1-2 eggs into conspecific nests as “insurance”
obligate brood parasitism: lay eggs in nests of other species and leave the young to be raised by “host”

Egg development
incubation
optimal temp: 37-38o C (100o F)
too hot is lethal, too cold slows development
in most species, only female incubates; heat transferred through brood patch
male penguins place eggs on feet to keep eggs warm
megapodes (e.g., brush turkeys) use heat produced by decomposition of organic matter

Precocial Hatchlings
young leave nest after hatching; can feed themselves
e.g., Anseriformes, Galliformes, Charadriiformes

Altricial hatchlings
young naked, blind, helpless; require much parental care
e.g., Passeriformes, Falconiformes, Piciformes, Apodiformes

Why have altricial hatchlings?
precocial development is primitive; altricial evolved independently in several taxa
altricial may be associated with learning:
precocial: large brains at hatching, but adult has relatively small brain
altricial: much post-hatch brain development; adults proportionately large brains


Mating systems (monogomy)
Monogamy (92% species)
1 male socially bonded to 1 female; often defend territory
long pair bond; 1 season to lifetime
“divorce” more likely if reproductive failure occurs
parental care is shared (unevenly; females incubate and feed nestlings more frequently)
male and female reproductive success is similar
monogamy occurs when it’s the best strategy for both sexes
monogamy expected whenever...
males improve survival of young (e.g., gull parents take turns foraging and protecting young )
males (or females) cannot defend resources to attract multiple mates

Extrapair copulations
monogamy is not “strict”
social monogamy ≠ genetic monogamy
extrapair copulations (EPCs) occur
85% of monogamous bird species
5-50% offspring from EPC
benefits of EPCs
males: higher reproductive success
females: benefit: better quality genes or access to better/more resources
males try to prevent EPCs with mate guarding and frequent copulations

Mating systems (polygyny)
polygyny is uncommon (3% of species)
1 male mated to >1 female; pair bonds may or may not occur
usually occurs in habitats with high variation in territory quality
e.g., 13 of 14 N.A. songbirds that are polygynous nest in grasslands or marshes (e.g., Red-winged Blackbirds)
potential of polygyny increases as resources become clumped and economically defensible
good territories attracts multiple females, poor territories attracts only single female mate
males often provide less parental care to clutches of “secondary” females

Mating systems (polyandry)
polyandry is extremely rare (1% of species)
1 female mated to > 1 male; no extended pair bond
usually involves sex role reversal; males incubates and cares for young
primarily in Gruiformes and Charadriiformes
evolution of polyandry is difficult to explain (i.e., females have higher reproductive success, but what about males?)

Mating systems (polygynandry)
polygynandry is extremely rare (1% of species)
both sexes have multiple mates; short-term pair bonds form
e.g., Bicknell’s Thrush
females hold small, non-overlapping nesting territories
males and female mate with multiple partners
2-4 males feed at a female’s nest (some males feed at multiple nests); but just 1 female per nest
high-quality territories have more fledglings, but fewer males feeding

Mating systems (promiscuity)
promiscuity is infrequent (6% of species)
both sexes have multiple mates; no pair bonds
usually only the female provides parental care
e.g., Ruby-throated Hummingbirds

Leks
lek (mating sites and displays; not a mating system)
lek = aggregation of males that engage in competitive displays and courtship rituals that female observe
either a polygynous or promiscuity mating system; no pair bond formed
males display to females at traditional sites
lek site has no resources; females get sperm only
lek has many males (usually with elaborate traits)
male reproductive success is variable; less than 10% of males obtain more than 80% of the matings!
females provide all the parental care
Exploded leks
few males display in several leks separated by relatively short distances (e.g., American Woodcock)
Cooperative leks
groups of males display to attract females, but only dominant male mates (e.g., manakins)
Sexual selection
birds are anisogamous
anisogamy = production of different-sized gametes by males and females (i.e., tiny sperm and large eggs)
operational sex ratio = number of males and females available for mating at a given time
anisogamy and operational sex ratio cause males and females to maximize reproductive success differently

Fundamental asymmetry of the sexes (female)
females (usually):
produce few, large, energetically expensive eggs
usually provide considerable parental care
so... female reproductive success is limited by the number of eggs she can produced and raise successfully
natural selection should favor female traits that enhance the quality of offspring (i.e., improve offspring survival and reproduction)
females must invest carefully in each of her relatively few eggs
Fundamental asymmetry of the sexes (male)
males (usually):
produce numerous, energetically inexpensive sperm
typically spend less time with eggs and offspring
male reproductive success is limited by number of mates
natural selection should favor male traits that improve the chance of producing many offspring
Sexual selection
a special case of natural selection: sexual selection
sexual selection: natural selection acting on traits involved in obtaining mates
fundamental asymmetry of sex predicts:
members of rarer sex (in breeding season) that provide more parental care are “choosy” about mates
usually females
members of more abundant sex (in breeding season) that provides less parental care typically compete for mates
usually males
sexual selection produces sexual dimorphism
sexual dimorphism: differences in morphology of sexes
e.g., sexual dimorphism in Wood Ducks and Scarlet Tanagers

Intrasexual selection
selection for traits that enhance within-sex mating interactions; (usually) male competition for mates
Intersexual selection
selection for traits that improve between-sex mating interactions; (usually) female choice of mates
How do males compete for mates?
mating displays (e.g., lekking sage grouse)
defend territories for breeding and foraging; involves chases, singing, and sometimes fights

What is the female basis of choice in mates?
resources provided by males, such as nest sites and food
genetic benefits: males with ‘good’ genes that enhance offspring survival or reproductive success


Resources provided by males
food (i.e., “nuptial gifts”)
e.g., female Arctic Terns are more likely to pair with males with high-quality nuptial gifts
e.g., Great Grey Shrikes
male with larger caches preferred by females
males more likely to obtain EPCs if offer largest prey items to female
territories with nesting sites
e.g., nest sites in territories of Red-winged Blackbirds
females selected males with nest sites overhanging water (an indicator of territory quality)
females selected males with best territories, even if already mated
polygyny threshold model: polygynous mating is costly to females; cost of polygyny accepted if compensated by a superior territory or male
parental care
e.g., female Sedge Warblers select males with large song repertoires as social mates
repertoire size positively associated with with male parental care and chick weight

Genetic benefits to females
condition-dependent traits: “honest” advertisement of male performance or genetic quality
e.g., red color in male house finches
male songs as condition-dependent traits
e.g., swamp sparrow produce trills as part of song
trills involve sound at multiple frequencies with rapid vocal tract movements
vocal performance: upper limit to trade-off between trill rate and frequency
♀︎♀︎ solicited more to ♂︎♂︎ with high vocal performance


Handicap hypothesis
elaborate traits are survival burden; males’ ability to survive is reliable signal of “good genes” (e.g., Long-tailed Widowbirds)
experimental evidence that females prefer long tails in Long-tailed Widowbirds
males with elongated tails had more mates
