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microbiology
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Rickettsia rickettsii
Obligate intracellular
causes Rocky Mountain Spotted Fever
transmitted by ticks
signs and symptoms: spotted rash (palms & soles), fever, muscle pain
diagnosis: cell/tissue culture or direct serology
treatment: antibiotics
Neisseria gonorrhoeae
diplococci (coffee bean shape) fastidious capnophiles
causes gonorrhea
transmitted sexually or perinatal (ophthalmic neonatorum)
signs and symptoms: Males have urethral discharge/pus, fever, inflammation, WBCs present, may cause gonococcal arthritis (joint pain); Females mostly asymptomatic but can develop PID, scarred fallopian tubes, infertility, ectopic pregnancy
diagnosis: Gram stain, Thayer Martin Agar with CO2 generator, ELISA, DNA probes, PCR urine sample
treatment: antibiotics
Neisseria meningitidis
diplococci (coffee bean shape) fastidious capnophiles
causes meningococcal meningitis
transmission: respiratory droplets
signs and symptoms: fever, severe headache, stiff neck, flu-like symptoms, inflammation, rash, purple fingers due to endotoxic shock, nausea, vomiting, dizziness
diagnosis: rapid latex agglutination for capsular antigen, Gram stain and culture, PCR test, serotype B is most common in US
treatment: antibiotics penicillin, cephalosporins
prevented by vaccine
Bordetella pertussis
rod to coccobacilli (mostly rod-like), contains capsules and tracheal cytotoxin (exotoxin)
causes whooping cough (pertussis)
transmission: respiratory droplets
signs and symptoms: catarrhal stage - common cold (1-2 weeks); paroxysmal stage - violent coughing sieges, mucus accumulation, cyanosis (1-6 weeks); convalescence stage - symptoms improve (couple weeks to months); may cause seizures, brain damage
diagnosis: nasopharyngeal swab onto Bordet Gengou agar, serology, PCR
treatment: antibiotic erythromycin
prevented by pertussis vaccine (does not last a lifetime)
Burkholderia cepacia
motile, aerobic, rod, endotoxin
causes respiratory infections in patients with cystic fibrosis or pneumonia
transmission: hospital associated infection (HAI)
signs and symptoms: coughing, fever
diagnosis: Gram stain
treatment: can be resistant to disinfectants/antibiotics due to biofilm in respiratory tract
Pseudomonas aeruginosa
bacilli, grows in most places (needs few nutrients), polar flagella
causes nosocomial infections (HAI), swimmer’s ear, UTI, burn/wound/respiratory infections, dermatitis, conjunctivitis
transmission: opportunistic
diagnosis: TSA - green pigment, fruity odor, MAC non-fermenter of glucose and lactose
treatment: antibiotics
Legionella pneumophila
coccobacilli
causes Legionnaires disease (pneumonia)
transmission: airborne (found in streams, warm water pipes, cooling tower), NOT person to person
signs and symptoms: coughing, fever, muscle ache, headache in immunocompromised people
diagnosis: buffered charcoal yeast extract agar, FA test (direct serology, PCR), DNA probes
treatment: antibiotic erythromycin
Vibrio cholerae
motile comma shaped bacilli, halophile, exotoxin
causes cholera
transmission: found in coastal water, fecal-oral route
signs and symptoms: severe fluid loss from diarrhea, rice-water stools, “tenting” in pinched skin (dehydration), NO fever
treatment: fluid & electrolyte replacement, antiobiotics
prevention: adequate water treatment, properly cooked food, hygiene (keep open wounds clean)
Escherichia coli
straight rods, facultative anaerobic, ferment glucose/carbs, motile (peritrichous flagella), enteric
causes UTI, traveler’s diarrhea
O157:H7 - hemolytic uremic syndrome (kidney damage) due to exotoxin
transmission: normal flora of GI tract
O157:H7 - fecal-oral route
diagnosis: urine sample (UTI), MAC lactose fermenter, indole positive (catabolism of tryptophan)
O157:H7 - stool culture, inability to ferment sorbitol, DNA fingerprinting
treatment: antibiotics, IV rehydration
Proteus mirabilis
bacilli, extremely motile, enteric, peritrichous flagella, facultative anaerobe
causes UTI, wound infection
transmission: endogenous, normal flora of GI tract
diagnosis: swarming on BAP & TSA, MAC nonlactose fermenter, urease positive
treatment: antibiotics
Salmonella enterica
bacilli, enteric
causes gastroenteritis
transmission: fecal-oral route (from poultry, reptiles, hedgehogs, fish, duckling)
signs and symptoms: diarrhea, vomiting abdominal cramp, low grade fever
diagnosis: stool culture
treatment: self-limiting, rehydration
prevention: don’t eat raw eggs or meat
Haemophilus influenzae
coccobacilli to rod (pleomorphic), fastidious capnophile, found in upper respiratory tract
causes *epiglottitis, *meningitis, bronchitis, conjunctivitis, otitis media
**caused by encapsulate type B
transmission: respiratory droplets
diagnosis: chocolate agar in CO2, X (heme) and V (NAD) factors needed for growth
treatment: antibiotics
prevention: vaccine
Campylobacter jejuni
curved bacilli, one polar flagellum
causes gastroenteritis
transmission: fecal-oral route (raw milk, poultry, meats, apple cider)
diagnosis: CAMPY agar, low O2, 42 C (slightly above body temp)
treatment: antibiotics, rehydration
Helicobacter pylori
contains enzyme urease (ammonia → urea), buffering effect allows it to grow in stomach
causes stomach (peptic) ulcers
transmission: ubiquitous, acquired by ingestion
signs and symptoms: stomach bleeding, abdominal pain, dark stools
diagnosis: gastric biopsy, indirect serology, urea breath test
treatment: bismuth subsalicylate (pepto bismol), antibiotics, heavy metals
Chlamydia (trachomatis and pneumoniae)
obligate intracellular
causes STI, trachoma (eye disease leading to blindness), urethritis, atypical mild pneumonia in older adults
transmission: STI - sexual, perinatal; Trachoma - poor sanitation, touching eyes/face
signs and symptoms: STI - pain, watery urethral discharge, females often asymptomatic
diagnosis: cell culture (costly, not preferable), immunofluorescence (direct serology), PCR test from urine sample
treatment: antibiotic tetracycline
Treponema pallidum
spirochete, axial filaments, sheath, cannot gram stain but closely related to gram negatives
causes syphilis
transmission: sexual, congenital (in the womb)
signs and symptoms:
Primary stage - painless genital lesions/ulcer (chancre)
Secondary stage - rash (palms & soles), flu-like symptoms, systemic infection
Latent stage - lasts many years
Tertiary stage - weakened blood vessel walls (aneurysm), seizures, dementia, tissue damage (gumma) due to improper immune function
diagnosis: darkfield microscopy (not preferred), blood test, indirect serology (RPR, FTA-ABS)
treatment: antibiotic penicillin (only for primary and secondary stages)
Borrelia burgdorferi
spirochete
causes Lyme disease
transmission: deer ticks, take 36-48 hrs to transmit disease (must get tick off ASAP)
signs and symptoms: bulls eye rash, flu-like symptoms, meningitis, irregular heartbeat, Bell’s palsy (facial nerve), arthritis (late stage)
diagnosis: serology
treatment: antibiotic doxycycline
Bacteroides
bacilli, obligate anaerobe, found in mouth and large intestine
causes deep tissue infection
transmission: endogenous (i.e. perforated bowels after vehicle accident)
signs and symptoms: pus, pain, fever, bad odor
diagnosis: reduced media (anaerobic jar), aspirate sample
treatment: antibiotics, drain pus
Fusobacteria
anaerobic bacilli, pointed ends (spindle shape), found in mouth
causes dental diseases
transmission: endogenous
signs and symptoms: redness, swelling, pus, fever
diagnosis: anaerobic jar
treatment: drain pus, antibiotics