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Human Microbiome
the sum total of all microbes found on and in humans
100 to 1,000
For every human cell that makes up your body are _____ bacteria cells associated with your body
Germ (bacteria) free
For all practical purposes humans are considered to be ____ at birth
Lactobacillus
Bacteria acquired when newborns when passing through birth canal
Yes (Maybe some Lactobacillus but not born with a normal flora)
Are humans considered to be germ free at birth?
Escherichia Coli
Soon after birth from environmental exposure and food, infants are colonized by what bacteria
Human milk; (Lactobacillus, and Streptococcus)
What fluid contains bacteria that help colonize the newborn gut
Very few
How many of the many species of bacteria that occur in nature can actually cause disease in humans?
Virulence
Refers to severity of disease caused by microbe
Attenuated
When a microbe has lost the ability to cause disease
Etiology
The study of the cause of a disease
Etiologic agent
A microbe that causes a specific disease or condition
Staphylococcus epidermidis and Staphylococcus aureus
Normal Flora of Skin: Predominate
MRSA
Normal Flora of Skin: 20% of people are carriers of this
Methicillin Resistant Staphylococcus Aureus
MRSA
Pseudomonas, Lactobacillus, and Yeast (Candida albicans)
Normal Flora of Skin: Other microbes
100’s of different species; Streptococcus mutans
Normal flora in Mouth
Neisseria meningitidis
Normal flora in Nose
Normal flora in nose; causes meningococcal meningitis
Neisseria meningitidis
Escherichia coli, Proteus, Klebsiella, Shigella
Normal flora in Large Intestine
Enterics
Normal flora of the large intestine (Escherichia Coli, Proteus, Klebsiella, Shigella) are also called
Less
Small Intestine has ___ normal flora than Large Intestine
Even less than Small intestine
Stomach normal flora
some Staphylococcus and Pseudomonas
Lower Urinary and Genital system Normal Flora
If in wrong place in body can cause disease
All normal flora usually are not pathogenic but
Free of or have few bacteria
Most internal tissue, organs, etc. should be
Probiotics
Microorganisms that have claimed health benefits when consumed
Prebiotics
the thought that chemicals can promote growth of bacteria beneficial to the body
Staphylococcus and Streptococcus
What genera usually cause skin infections?
MRSA (Methicillin Resistant Staphylococcus aureus)
Skin bacteria that are a major problem in post-surgical wound infections
Good hygiene
What practice lowers incidence of MRSA
Colonization
The bacteria is present but not making you sick or causing disease
Infection
Bacteria is present and is actively making you sick
Boil or abscess
A localized region of pus surrounded by inflamed tissue
Pus
Accumulation of dead phagocytes and bacteria and fluid
Inflammation
Host response to tissue damage characterized by redness, pain, heat, swelling
Folliculitis
Infection of hair follicles often appear as pimples
Impetigo
Superficial bacterial infection that causes the skin to flake or peel off, crusted skin on lesion; not a serious disease but can be highly contagious
Occurs primarily in children
Newborns
Staphylococcus aureus causes impetigo in
Children 2 years or older
Streptococcus pyogenes (Beta hemolytic strep) causes impetigo in
Strep throat, Rheumatic fever, Scarlet fever, Impetigo, Toxic Shock Syndrome, Inner Ear Infections, Necrotizing fasciitis, PANDAS
Streptococcus pyogenes causes…
Scalded skin syndrome
Blistering and peeling of skin indicator of;
Caused by staphylococcus aureus
Pseudomonas aeruginosa
Normal flora of skin; common cause of dermatitis
Associated with dirty hot tubs etc.
Dermatitis
Refers to any inflammation of the skin.
many different forms and causes
itchy rash and reddened, swollen skin
Swimmer’s Ear
Pseudomonas resistant to disinfectants such as chlorine so is primary cause of
Psuedomonas Aeruginosa
Bacteria major cause of death in burn patients and pneumonia in humans especially cystic fibrosis
Necrotizing fasciitis
Rare and serious condition when bacteria infect the layer of connective tissue below the skin (Fascia)
flesh eating bacteria disease
often follows minor cuts, abrasions, etc.
Streptococcus
Necrotizing fasciitis caused primarily by bacteria in the genus
Vibrio species
Other bacteria causing necrotizing fasciitis; most recently in seawater (Gulf Coast)
Toxic shock syndrome
When bacteria produce a potent toxin when able to multiply
Associated with certain staphylococcus
Eye lids, outer surface of the eyeball
The eye has typically few numbers of normal flora such as staphylococcus on the…
Sterile Environment
The eye is not a
Conjunctivitis
Inflammation of the mucus membrane that lines the eyelids and covers the outer surface of the eyeball
variety of bacteria, viruses and other microbes—protozoa & fungi
What can cause Conjunctivitis?
Staphylococcus & Pseudomonas
Bacteria—most often associated with conjunctivitis
Neonatal gonorrheal ophthalmia
Serious form of conjunctivitis caused by Neisseria gonorrhoeae acquired as newborn passes through birth canal
Neisseria gonorrhoeae
All newborns receive antibiotic in eye within one hour after birth as a precaution against ____ (first antibiotic)
Live-attenuated
Inactivated
Subunit, recombinant, polysaccharide, and conjugate
Toxoid vaccines
4 main types of vaccines
Live-attenuated vaccines
Vaccines that uses a weakened (or attenuated) form of the germ that causes a disease
Risky for immunocompromised individuals, need to be kept cool (cannot be used without refrigeration)
Live vaccine limitations
Measles, mumps, rubella (MMR combined vaccine)
Rotavirus
Smallpox
Chickenpox
Yellow Fever
Live vaccines are used to protect against:
Inactivated vaccines
Vaccine that uses the killed version of the germ that causes a disease.
Thimerosal; Mercury
Some inactivated vaccines contain the preservative ____, which contains ____
So, some contention say it affects nervous system and thus cause autism
Immunity; Boosters
Inactivated vaccines usually don’t provide ____ (protection) that’s as strong as live vaccines. So, you may need several doses (____) over time
Hepatitis A
Flu (shot only)
Polio (shot only)
Rabies
Inactivated vaccines are used to protect against:
Subunit, recombinant, polysaccharide, and conjugate vaccines
Vaccines that uses specific pieces of the germ, like its protein, sugar, or capsid
Hib (Haemophilus influenzae type b) disease
Hepatitis B
HPV (Human papillomavirus)
Whooping cough (part of the DTaP combined vaccine)
Pneumococcal disease
Meningococcal disease
Shingles
Subunit, recombinant, polysaccharide, and conjugate vaccines are used to protect against:
Toxoid vaccines
Vaccines that uses a toxin (harmful product) made by the germ that causes a disease; create immunity to the parts of the germ instead of the germ itself (boosters needed)
Diphtheria
Tetanus
Toxoid vaccines are used to protect against:
mRNA Vaccines
Uses mRNA protein to spur cells to produce viral proteins that simulate potent immune response
Covid-19
mRNA vaccine protects against:
Meningitis
Inflammation of the meninges (membranes covering the brain and spinal cord) which is usually caused by an infection is called
A variety of bacteria, viruses, fungi, and protozoa
Meningitis can be caused by
Encephalitis
Inflammation in the brain itself which is usually caused by an infection is called
Neisseria meningitidis, Haemophilis influenza, Streptococcus pneumonia
3 major causes of bacterial meningitis in US
Neisseria meningitidis
part of normal flora of nasopharynx in some individuals, Causes what is known as Meningococcal meningitis
Meningitidis vaccine
Vaccine used against Neisseria meningitidis—enhanced protection to meningitis caused by this bacterium
Haemophilis influenza
part of normal flora of throat, at one time thought to cause the flu
Primarily a childhood disease—Hib vaccine
Can cause bacterial meningitis
Streptococcus pneumonia
Can cause what is known as pneumococcal pneumonia and meningitis
pneumococcal vaccine
Listeria monocytogenes
Can cause meningitis in elderly and immunocompromised
CSF (Cerebrospinal Fluid)
Diagnosis of bacterial meningitis—usually get ____ from Spinal Tap
Clostridium tetani
Spore forming bacteria; The toxin prevents the relaxation pathway, so muscles stay in contraction typically one of the first group of muscles affected are muscles in the jaw
Old name of disease is lockjaw; now tetanus
Tetanus vaccine
Given to prevent clostridium tetani since 1940’s—if untreated very often fatal still a problem in many parts of the world
Clostridium botulinum
Spore former—common in environment—soil etc. Typically, if spores ingested not a problem
Most often ingest preformed toxin in food—a form of food poisoning
Botulism
Disease where most cases a result of improper food preservation—failure to eliminate spores etc. Considered a rare disease caused by clostridium botulinum
Honey
Clostridium botulinum spore could germinate in ____, if ____ is given to a newborn it could germinate in their intestine and release a toxin and cause cause flaccid paralysis; SIDS?*
Mycobacterium leprae
Grows in peripheral nervous system nerves that connect outer part of body to CNS; Cause a disease known as leprosy—medical term is Hansen’s disease
bone reabsorbtion and disfigurement
Leprosy causes
No
Is Leprosy highly contagious
Armadillos
Natural host animals for mycobaterium leprae
Heart, blood, blood vessels
Where would you expect no bacteria in these areas under normal conditions
Septicemia
Presence of unwanted bacteria or bacterial products in the blood
Sepsis
Overwhelming body-wide inflammatory response to a pathogen or toxin
Septic shock
Most dangerous stage of sepsis in which a patient’s blood pressure may drop to point to the point that blood is not adequately propelled into tissue and organs leading to tissue death
Lymphangitis
Sepsis and septicemia are often accompanied by ____ which is inflammation of lymphatic vessels
Bacterial Endocarditis
Inflammation of this Endocardium, the inner tissue lining of the heart. Often a result of bacterial infection in blood-bacteria adhering to endocardial tissue
Staphylococcus aureus or Streptococcus pyogenes
Bacteria usually involved in Bacterial Endocarditis and Acute Bacterial Endocarditis
Acute Bacterial Endocarditis
Bacteria colonize valves of heart—make them not function properly
Myocarditis
inflammation (infection) of the heart muscle itself
Pericarditis
inflammation (infection) of fluid filled sac around the heart