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CHAPTER 1
CHAPTER 1
what is the immune system?
how the body protects and fights dangerous pathogens or foreign invaders
what are pathogens?
organisms that cause disease, such as bacteria, viruses, fungi, and parasites.
is there a situation where someone doesnt have an immune system?
AIDS. you develop HIV which destroys T helper cells, leaving the person unable to mount an effective adaptive response
what are you suffering from when you dont have an immune system?
immunodeficiency
how can immunodeficiencies arise?
from birth (genetic) or you can acquire it later in life through an infection (HIV → AIDS)
what is another benefit of the immune system apart from fighting pathogens?
it protects us from cancers/ malignancies
what are some cells of the immune system?
B cells
T cells
basophils
macrophages
neutrophils
NK cells
eosinophils
dendritic cells
monocytes
mast cells
what are the cells of the immune system?
white blood cells
is there a situation where the immune system is actually your enemy? why?
lupus, which is an autoimmune disease where the immune system stops telling self from non-self and starts attacking the body’s own healthy tissue as if it were a foreign invader
why are diseases autoimmune?
the immune system attacks the body’s own tissues/proteins, rather than foreign pathogens. immune response against your own body
what happens if your immune system is attacking its own joints?
you get rheumatoid arthritis
what happens if your immune system is attacking the pancreas?
you have type 1 diabetes
what happens if your immune system is attacking your nervous system?
you get multiple sclerosis
what type of autoimmune disease is lupus?
systemic, meaning your immune system attacks different parts of the body
if you have an autoimmune disease, what do you have to take and why?
immunosuppressants to calm the overactive immune system attacking the body’s own tissues. also autoimmune diseases are chronic
what is the trade-off with taking immunosuppressants?
suppressing the immune system to stop it from attacking itself also makes the person more vulnerable to infections since you’re dialing down the whole system
a healthy immune system need to tell the difference between what?
self and non-self (foreign)
how is the immune system able to know what is foreign and self?
through their immune receptors
is receptor generation random or controlled?
receptor generation itself is random (DNA rearrangement/"generation of diversity" creates a huge variety of unique receptors by chance), especially the the process that generates specificity for the receptors since they’re highly specific
what are autoreactive cells?
B or T lymphocytes whose receptors bind to self-antigens instead of foreign ones
what happens when too many autoreactive cells recognize self?
they activated, attack your own body and then you end up with an autoimmune disease
what happens when self-antigens are detected?
they are eliminated and inactivated during development
how does your body make sure that you dont have that many autoreactive cell floating around?
your lymphocytes are developed in primary lymphoid organs
what are the primary lymphoid organs?
thymus and bone marrow
where are B cells made?
bone marrow
where do T cells fully develop?
thymus
when lymphocytes develop in the primary lymphoid organs, what do they need to be in contact with?
the tissues of the lymphoid organs theyre growing in
what allows the lymphocytes to be in contact with the various tissues of the primary lymphoid organs
receptors
what fundamental question are developing lymphocytes "asked" before leaving the primary lymphoid organs?
do your receptors recognize self antigens?
What should the lymphocyte "answer" to pass the test? why?
no because only lymphocytes that recognize non self are allowed o survive and leave the primary lymphoid organ
what happens if a lymphocyte answers that it recognizes self?
it is killed, deleted, or inactivated during development. it dies by apoptosis
what is negative selection?
the process during lymphocyte development where cells with receptors that strongly binds self-antigens are eliminated (deleted) in the primary lymphoid organisms
what latin terms is the source of the english word immunity?
immunis
what does immunis mean?
exempt
what ancient greek historian first wrote about immunity?
thucydides. he wrote about the plague in athens that was caused by the black death. he observed that if youre sick and i want to get close to you, im also going to get sick within days. then he realized that if you had the disease and were lucky to recover and go help someone that is sick, you likely wouldnt get sick again
what are the two ways to build immunity?
natural (getting sick and getting better)
artificial (vaccines)
what important skill does the immune system have?
immunological memory
what is immunological memory?
the ability of the adaptive immune system to respond faster and stronger upon re-exposure to an antigen it has already encountered due to long-lived lymphocytes left over from the first primary response
in order for a cell to recognize something foreign, it needs to have the right specific….
receptor
if the cell has a receptor that binds to something its supposed to recognize, what happens to that cell?
it signals
what happens after a cell signals?
it gets activated and divides/expand through mitosis
if we only have a few cells to combat an infection on their own, what do these few cells need to do?
they need to divide and expand
what is clonal expansion?
after a B or a T cell’s receptor binds to its specific antigen, it proliferates, producing many identical copies all with the same antigen specificity
should activated lymphocytes stay activated long-term after clearing an infection?
no once the pathogen is cleared, most effector lymphocytes should die off to prevent unnecessary/chronic inflammation and tissue damage
how does the immune system get rid of the activated lymphocyte once it has fought off the invasion?
once you activate the lymphocyte it becomes a ticking bomb, meaning it has enough time to do its job (effector function) but slowly it starts the process of apoptosis
what happens to a very small percentage of activated lymphocytes?
they survive as memory cells for future protection
what is immunological memory driven by?
memory cells
what are memory cell and what are they important?
lymphocytes that have survived the initial activation stage and let the body respond faster, stronger, and more specifically if the same pathogen ever comes back, often stopping it before you even feel sick. this is exactly why vaccines work, and why we usually don't get certain diseases twice.
what are mechanisms of the immune system that they harness to fight pathogens?
recognizing self from non-self
clonal expansion
immunological memory
can we generate immunity without inducing disease? how?
yes through vaccination
what do vaccinations do?
prepares the immune system to eradicate an infectious agent before it causes disease
what is an example of a vaccine that has eradicated an infectious agent?
rabies vaccine and the eradication of smallpox
who is the father of vaccination?
Edward Jenner
how did edward jenner discover vaccinations?
he made the observation that milk maids who were getting cowpox, were then immune to smallpox
how were people who obtained cowpox, then immune to smallpox?
cowpox is similar enough to smallpox that the immune system's memory cells formed against cowpox could also recognize and fight off smallpox
what is immunological cross-protection?
when memory cells built against one pathogen also protects against a different but closely related pathogen because they share similar antigens (example cowpox exposure → protection against smallpox)
what mediates an immune response?
antibodies or cells
who makes antibodies?
B cells
what are the two branches of adaptive immunity?
cell-mediated immunity
humoral immunity
what is cell-mediated immunity driven by?
t cells that directly kill infected cells/help other immune cells
what is humoral immunity driven by?
b cells that secrete antibodies into body fluids to neutralize/tag pathogens
what are antibodies produced by?
B cells
what do humoral and cell-meditated immunity rely on?
surface receptors- B-cell receptors and T-cell receptors
how are the receptors on B cells and T cells generated?
randomly through gene segment rearrangements in B and T cells
what happens when a B cell encounters its antigen?
it produces antibodies— soluble versions of the same specificity as its membrane-bound immunoglobulin (B-cell receptor)
what do T cell receptors bind to?
specific peptides presented by MHC molecules (not free-floating antigen like B cells)
what does each individual B or T cell have specificity for?
a single antigen because each cell expresses many copies of one receptor that binds only one antigen type
what happens when a B or T cell interacts with its specific antigen?
it is selected and becomes activated?
what does activation of a B or T cell lead to?
proliferation, producing a large number of identical clones
what are these clones reactive against?
the same antigen that originally activated the parent lymphocyte
what does tolerance ensure?
that the immune system doesnt attack self
why is tolerance necessary, given how B- and T-cell receptors are made?
since receptors are generated randomly, many of the random rearrangements could accidentally create anti-self receptors
which mechanism is the one that ensures tolerance?
negative selection
how does tolerance protect the body?
it keeps anti-self cells/receptors or in other words cells that react to self from circulating in the bloodstream (by eliminating or inactivating them during development)
what 2 components if the immune system itself divided into?
adaptive and innate
is the adaptive or innate more specific?
adaptive
what immune system component is the largest organ in our body part of?
innate
what enzyme do we have in salvia and tears?
lysozyme
what does lysozyme do?
break down the cell wall
what bacteria primarily does lysozyme break down?
gram positive
is the process of lysozyme breaking down the cell wall of gram positive bacteria innate or adaptive?
innate (not specific because it doesnt matter what gram positive bacteria it is, its breaking down the cell wall)
what cells are part of the innate system?
everything apart from B cells and T cells
basophils
mast cells
monocytes
macrophages
dendritic cells
NK cells
neutrophils
what is the difference between adaptive and innate cell receptors
innate receptors dont have the kind of specificity that B cells or T cells have. adaptive receptors recognize patterns
what immune system component has the most diversity?
adaptive because theyre highly specific. the more specific you are, the more diversity you need to have to cover all the specificities out there
tolerance and the ability to recognize self from non-self is a trait of what immune system component?
adaptive (B cells and T cells)
why are tolerance and negative selection features of the adaptive immune system?
only adaptive cells make random, unique receptors and random receptors can accidentally recognize self. tolerance and negative selection are the safety check that remove those self-reactive cells.
why dont innate cells need to be negatively selected?
their receptors are not randomly generated, theyre inherited, fixed genes passed down that specifically evolved to recognize common pathogen patterns, not self. since theres no randomness, theres no risk of accidentally creating a self-reactive receptor so no screening process is needed
immunological memory is a characteristic of which immune system component?
adaptive
When you get infected with the same pathogen repeatedly, how does the innate immune system respond each time?
the same way every time — with the same speed and strength. Innate immunity has no memory, so it doesn't improve or respond faster/stronger on repeat exposures
how does the innate response time compare to the adaptive?
innate is much faster (minutes to hours). Adaptive is slower (takes 5-6) days to fully develop
how does the innate specificity compare to the adaptive?
innate immunity has limited, fixed specificity. it recognizes broad, shared pathogen patterns but cant distinguish fine differences. adaptive immunity is highly specific. it cant distinguish tiny molecular differences and generates new, tailored receptors
how does the innate response to repeat infection compare to the adaptive?
Innate immunity responds the same way every time (no memory). Adaptive immunity responds faster and more effectively with each repeat exposure, due to memory cells left over from the first encounter
what are pattern recognition molecules (PRRs)?
receptors on innate immune cells that recognize common, shared structures found on many pathogens (PAMPs- pathogen associated molecular patterns). they are inherited fixed genes, always expressed, allowing fast but non specific detection of invaders
what are the physical and chemical barriers of the innate immune system?
skin
mucosal membranes
stomach acidity
lysozyme in tears
What do many innate immune cells do to pathogens? how do they destroy them?
using phagocytosis
which cells are involved in innate immune responses?
neutrophils
eosinophils
macrophages
dendritic cells
NK cells
what are interferons?
a type of cytokine (alpha and beta) released by virus-infected cells to warn nearby cells of infection, triggering an antiviral state that blocks viral replications
what are cytokines?
molecules that WBC make soluble to either talk to each other or cause damage to foreign things. a way that cells talk to each other
what are complement proteins?
group of inactive serum proteins able to destroy membranes of pathogens or facilitate their clearance