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Challenges facing the immune system
- microbes replicate quickly
- microbes evolve quickly
- must react to every pathogen but not react to self
- must clear infected tissues without damaging self
Innate Immunity
Timing: rapid (m-h)
Specificity: Germline encoded
Cells involved: Most if not all cells
Functions: Hold pathogens in check, stimulate adaptive responses
Adaptive Immunity
Timing: slower (days)
Specificity: Somatically generated, highly specific
Cells involved: Primarily B and T cells (selectively absent in SCID)
Functions: B cells make antibodies, Cytotoxic T cells kill infected cells, Helper T cells make cytokines, Memory
Cells of immune system to know
common myeloid progenitor
- neutrophil
- monocyte (macrophage or dendritic cell)
from common lymphoid progenitor
-natural killer (NK) cell
need to know anatomy of immune system
bone barrow
thymus
spleen
lymph nodes
Cells that arise from Myeloid progenitor
Neutrophil: Phagocytosis and killing of microorganisms, oxidative burst (kill microbes by producing ROS), kill pathogens with extruded "nets" composed of DNA and protein
Monocyte:
Macrophage: Phagocytosis and killing of microsomes, traffic phagocytosed and endocytosed particles to the lysosome
Dendritic cells: Activation of T cells and initiation of adaptive immune response
Cells that arise from Lymphoid progenitor
Natural killer (NK(cell)
Anatomy of immune system: Bone marrow
site of hematopoiesis and B cell development
Anatomy of immune system: Thymus
site of T cell development
Anatomy of immune system: Spleen
where T cells and B cells are activated when infection is in the blood; also filters blood and removed damaged RBCs
Anatomy of immune system: Lymph nodes
sites where B cells and T cells are activated when infection occurs in tissues
Barriers to infection (3)
1) Mechanical:Skin, tight junctions, flow of fluid, flow of mucus (polysaccharide chains - hard to swim)
2) Chemical: acidity, enzymes
3) Microbiological: normal (commensal) flora
Responses caused by actions of innate immune system
bacterial pathogens: redness, swelling, pain, heat: inflammation
infleunza: fever, muscle aches: cytokines and prostaglandins
parasite in gut mucosa: abdominal cramping: smooth muscle contractions for parasite expulsion
Professional Phagocytes
the first cells to encounter pathogens
- Dendritic cells, macrophages, neutrophils
3 Roles of Professional Phagocytes
Kill pathogens (macrophages -> lysosomes, make holes in membrane)
Initiate inflammatory response
Initiate and influence adaptive immune response
Characteristics of Lysosomes
- Acidity activates hydrolases
- Proteases (digest cell wall proteins), Glycosidases (cleave cell wall sugars), Lipases (cleave cell wall lipids)
- Metabolite transporters: pump essential metals and other nutrients out of lysosome
- Antimicrobial peptides: found in lysosome and active at acidic pH, make holes in pathogen membranes
Oxidative burst
A large increase in the oxygen consumption of immune cells during phagocytosis of pathogens as the immune cells produce oxygen radicals to kill the pathogen.
- macrophages and neutrophils
macrophages
Found within the lymph nodes, they are phagocytes that destroy bacteria, cancer cells, and other foreign matter in the lymphatic stream.
Neutrophils
Most abundant white blood cell., The most abundant type of white blood cell. Phagocytic and tend to self-destruct as they destroy foreign invaders, limiting their life span to a few days.
- kills pathogens with extruded "nets" composed of DNA and protein
Bacterial Capsule
A way bacteria avoids phagocytosis (eaten by neutrophils)
Thick layer of polysaccharides
Complement System
A system of proteins in the blood that combat pathogens
Protein labels microbial invaders
Poke holes, decorate membranes, inflammatory response: signals for phagocytosis
Membrane attack complex
Regulation prevents host cells from activating complement system
What prevents host cells from activating the complement system
regulation

Complement pathways (3)
1) Alternative pathway
C3b binding to microbial invaders
2) Lectin pathway
Mannose-binding lectin (MBL) binding
3) Classical pathway
Antibodies binding
Inflammation
Increased blood flow: redness, heat
Increased vascular permeability: swelling
Promotes the entry of immune cells into infected tissues; Changes make it easier for plasma proteins and cells to pass out of the blood and into site of infection
2 strategies for sensing pathogens
damage model
self-nonself discrimination
damage model
sense damage or alterations to host physiology induced by pathogens
Self-Nonself Discrimination model
sense specific features on pathogens that are not present normally
Pathogen-associated molecular patterns (PAMPs)
Invariant components of pathogens recognized by the innate immune system
- Not found on human cells
- Conserved among pathogens
- Difficult for pathogen to alter
- Alert immune system
Toll-like receptors (TLRs)
Survey the extracellular space and endosomes/lysosomes
Cytokines
Soluble proteins that diffuse through blood and activate other cells
- Sensing PAMPs result in production of inflammatory cytokines
Canonical inflammatory cytokine: Tumor necrosis factor alpha (TNF-α)
Inflammatory Cytokines: Immune Response
Chemokines are produced (proteins that attract immune cells: macrophages, neutrophils
Blood vessels become "sticky" for specific immune cells
Vasodilation increases blood flow to inflamed site
Blood vessels become leaky and plasma enters tissue (swelling)
Type I interferons
IFN-alpha and IFN-beta
Type I interferon Response
- recognition of viral PAMPs activates the interferon response
- transcriptional targets of Type I IFNs include intrinsic antiviral factors
1) induce resistance to viral replication in all cells
2) increase expression of ligands for receptors on NK cells
3) activate NK cells to kill virus-infected cells
innate response for multicellular pathogens (worms)
Recognition of components from worms (ex. chitin) initiate effector functions
- "weep and sweep": increased mucus production, smooth muscle contraction
macrophages:
- histamine
secrete chitinases and proteases
eosinophils
- degranulate toxic granules onto surface of the worm