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Human microbiome
a group of microbes that is essential for human life
Functions of the human microbiome:
digesting food
synthesizing vitamins
forming barricades against disease-causing bacteria
Dysbiosis
an imbalance in the microbiome, linked to numerous disorders
Largest endocrine organ
the microbiome, due to its ability to influence other organs while also responding to secretions from other organs
(T or F) The human genome contains about 22,000 genes, whereas the human microbiome contains about 8,000,000 genes.
True
(T or F) the human microbiome is considered our “second genome”
True
(T or F) Humans share around 99.9% of the same DNA, but no two people share the same microbiome.
True
The steps of building a microbiome
Starts before birth in the mother’s placenta
the newborn passes through the birth canal
the newborn is exposed to bacteria from its external environment, educating its immune system
The more varied and complex a child’s microbiome…
the more robust his immune system will be
The first 3 years of life…
are critical in establishing a microbiome that will enhance neurodevelopment and lifelong health
(T or F) Infants delivered by cesarean section (c-section) have a significantly increased risk of developing diseases such as asthma, immune deficiencies, and leukemia.
True
The greater the diversity of the microorganisms in the microbiome…
the stronger the immune system
Stages of Microbiome development
intrauterine life
birth
first year of life
second year of life
ages 2-5
adulthood
ages 65+
Intrauterine life
microbes pass through the placenta from mother to fetus, creating th efoundation for a microbial community
Birth
passage through the birth canal coats the newborn with the mother’s own bacteria, helping to create a diverse microbiome; skin-to-skin contact helps organize the microbiota
First year of life
breastfeeding exposes babies to 700+ species of bacteria and is crucial for establishing long-term health; at the end of the first year, babies have an individually distinct microbial profile
Second year of life
introducing solid food boosts microbial diversity
Ages 2-5
the intestinal microbiome resembles an adult’s in composition and diversity
Adulthood
changes in diet, environment, and antibiotics can alter the microbiome composotion; healthy adults have microbiomes that can regulate over time
Ages 65+
broad shift in microbiome populations; number of microbial species decreases; unclear why this happens or what this may lead to
Boosting the microbiome
consumption of a high-fiber, plant-based diet
eating foods rich in polyphenols
taking probiotics (live bacteria)
consuming prebiotics
eating fermented foods (i.a. yogurt and sauerkraut)
exercising
avoiding unnecessary antibiotics
Threats to the microbiome
antibiotics
a high-fat, high-sugar diet
stress
smoking
air pollution
sedentary lifestyle
overuse of sanitization
invasion of disease-causing bacteria
Bacteria
makes up the bulk of the microbiome
single-celled organisms
Capsules
surrounds the bacteria and keeps them from drying out
Peptidoglycan
makes up the cell wall for bacteria
Flagella
helps bacteria move around
Ribosomes
helps with protein production in bacteria
Plasmids
small loops of DNA within bacteria that can be traded among other bacteria
allows for extreme adaptability
Pili
small hair-like projections that are used to attach bacteria to other cells or surfaces
Bacterial shapes
Cocci — round or spherical
Bacilli — rod-shaped
Spirilla — spiral-shaped
Diplococci
round bacteria that exist in pairs
staphylococci
round bacteria that occur in clusters
Streptococci
round bacteria that exist as long chains
Fecal transplantation
the transfer of feces from a healthy person to the intestines of sick patients
Gram staining
a test that uses purple dyes to help identify disease-causing bacteria
Gram-positive bacteria
stains purple, showing they have a thick layer of peptidoglycan in their cell walls
antibiotics like penicillin are great for attacking peptidoglycan, making them more effective against these bacteria
Gram-negative bacteria
lose the dye and appear red or pink, showing that they have a thinner layer of peptidoglycan
Pathogens
microorganisms known to cause disease
Viruses
extremely small(er than bacteria) infectious agents that are not made of cells, therefore lacking the functions of cells
causes many human diseases like smallpox, AIDS, influenza, some cancers, and the common cold
Capsid
a shell made of capsomeres surrounding a virus’s genetic material (DNA or RNA)
some viruses have an additional surrounding layers called the envelope
Bacteriophages
viruses that specifically infect bacterial cells
Viral Replication
viruses require a host to replicate
1. the virus binds to the cell’s surface
2. the virus penetrates the cell by either fusing with its membrane or by causing the cell to voluntarily engulf it
3. the virus hijacks the cell’s mechanisms and causes the nucleus to produce viral nucleic acids instead of its own
4. the viruses burst from the cell, often resulting in the death of the host cell
Fungi
includes molds and yeasts
Mycobiome
the fungi community within the human microbiome
What kind of relationship does the microbiome and mycobiome have?
symbiotic