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Antigen
-any molecule that can interact with products of immune response
-interaction between receptor (Ab or TCR) and ligand (antigenic epitope)
B cell epitope (2 types)
-Linear: AA residue is adjacent in polypeptide chain
-discontinuous: AA residue in different parts of polypeptide chain
T-dependent (TD) Ags
response requires T cell help (cytokines), generates immunological memory
T-independent (TI) Ags
-response does not require T cells
-B cell response generally has no memory cells (need cytokines)
-has lipopolysaccharide (LPS)=not AG specific
immunogenic
ability to induce an Ab, or CMI (cell mediated immunity) response on its own
most potent immunogens
-Proteins, are the normal activator (immunogen) of CMI
-polysaccharides are second best
What makes up an antigen (4)
-forgiveness=greater polygenetic differences
-molecular size=the larger the better
-chemical composition(complexity)= homopolymers are NOT GOOD immunogens
susceptibility to AG processing/presentation= D-AA are NOT easily degraded, L-AA are easily degraded
Haptens
-small molecules that are antigenic but NOT immunogenic
-univalent
-often need to be attached to carrier protein to be immunogenic
-ex: penicillin, catechol
Epitopes
a given Ag can have multiple T and B cell epitopes
complex Ag=more epitopes
epitope=the specific part of an Ag the Ab recognizes
ideal antigen properties
generally, the larger and more complex=better
B and T cell antigens are usually:
B cell: protein or carbohydrate
T cell: protein or peptide
Ig vs Ab
Ig= generic term
Ab= specifies an Ig with a particular antigen specificity
Antigen specificity of a B cell results from:
Results from membrane bound Ig
Activated B cell develops into:
-Develops into a plasma cell secreting soluble Abs
-a given B cell makes Abs with ONE antigen specificity (binds one epitope)
Clonal selection and clonal proliferation allow for:
Expansion of B cells specific for one antigen
Idiotype
the area of Ab where Ag binds
Ab structure (chains)
2 identical heavy chains, 2 identical ight chains

Ab sturcutre, 2 heavy + 2 light chains
Ab structure (bonds for heavy chains)
Heavy chains are bonded by disulfide bonds in hinge region

Hinge region where heavy chains are bonded by disulfide bonds
Ab structure (bonds for light chains)
Light chains are bonded by a disulfide bond in CL region

Light chains are bonded by a disulfide bond in CL region
5 classes of heavy chains (inner)
-Isotypes: IgG, IgM, IgA, IgE, IgD (GAMED)
-aka: gamma, nu, alpha, epsilon, delta
2 classes of light chains (outer)
kappa or lambda
Where Ag binds on Ab
-Ab binds Ag at N-terminal end
-Fab region binds Ag

Ag binding to N-terminus occurs in Fab region
Fc biological activity
Has C’ activation and ADCC (antibody dependent cellular cytotoxicity) activity

Fc has biologic activity
Ab-Variable regions
N-terminal region of Ig: binds to Ag (VH and VL)
variability is concentrated in 3 complementarity determining regions (CDRs): CDR1, CDR2, CDR3
Framework regions= area that are less variable

CDRs of VH and VL chains (CDR1,CDR2,CDR3)
Monomer:bivalent Ig isotypes
IgG, IgD, IgE
Dimer/Pentamer/Multivalent Ig Isotypes
IgA(dimer) and IgM (pentamer)
IgM (5)
-pentameric (10 Ag binding sites)
-appears first during primary immune response
-best at C’ (complement) activation
-best at agglutinating (clumping) Ab
-monomer on surface of mature B cell
IgG (5)
divalent monomer with 2 Ag binding sites
predominant Ig in blood and lymph
appears in late primate and early secondary immune response
opsonin and mediates ADCC, and activates C’
crosses placenta
IgA (3)
a secretory Ig, in secretions (ex: oral cavity)
monomer on B cell surface, dimer in secretions (can be tetramer)
secretory component (SC): protective protein
IgD (3)
monomer
2nd receptor on B cell (after IgM, co-expressed with IgM)
clearly defined function is UNKNOWN (likely involved with activation of naive B cells)
IgE (5)
binds to basophils and mast cells
LOWEST concentration in serum
short ½ life in blood, long ½ life in mast cell surface
igE binds Ag=degranulation of mast cell=ALLERGIC REACTION
protects against parasitic worms=causes acute inflammatory reaction
Antibodies are produced by:
B cells
Fab region variability:
3 hypervariable regions: CDR1, CDR2, and CDR3
Millions of different antibodies are made by:
Ig gene arrangement
Gene segments encoding the heavy chain
V (variable)
D (diversity)
J (joining)
C (constant)
VDJ= variable for heavy chain
Gene segments encoding light chain
V,J,C
VJ=variable domain in light chain
Selection of genes is:
random and occurs before Ag stimulation
Alleic exclusion
B cell will only express one allele of the Ig H and L genes
Class switching
after Ag stimulation, a mature B cell can change its isotype
Gene arrangement possibilities
genes alone: 1.5Ă—10^7 possibilities
V(D)J recombinase
a complex of enzymes important in recognizing and excising the intervening sequences
RAG1 and RAG2
RAG=recombinant activating genes
expressed in B and T cells
recognize and bring together VDJ genes
Terminal deoxynucleotidyl transferase (Tdt)
adds back nucleotides in the joining region
non-germline nucleotide bases
Generation of Ig diversity (4)
multiple germ-line gene segments
junctional flexibility
N-region nu addition
P-region nu addition
Multiple germ-line gene segments
VDJ, about 1-3.5Ă—10^7 possibilities
junctional flexibility (variability)
imprecise joining of VDJ or VJ regions, and yield different AA in this region=diversity
N-region addition
addition of random bases by Tdt (during H chain rearrangement)
P-region addition
addition of bases by repair enzymes
Somatic hypermutation
mutation occurs in mature B cell when it proliferates
after Ig gene rearrangement, better Ag binding
occurs during clonal proliferation
mature (naive) B cell expresses:
IgM and IgD on its surface
Upon Ag recognition, B cell will divide and produce:
Will produce plasma cells and secrete Abd and produce memory cells
Class switch
dependent on presence of T cell cytokines
upon next Ag exposure, memory B cell can develop into plasma cell secreting another Ig isotype
igM and IgD are first expressed:
In the constant region sequences closest to the VDJ sequences
Ag independent phase
Ig gene arrangement= Ag specific B cells
Ag dependent phase
movement to periphery (90% of B cells die)
B cells develop into plasma or memory cells (class switching)
B cells produce:
Antibodies (effector cells)
Primary response
when naive B cell first sees its Ag
IgM production
slower response, 7-14 days
T cell help NOT required
B cells often class switch
Secondary response
memory response
produce IgG or other isotypes
affinity maturation
quicker response, 1-3 days
NEEDS T cell help
Development of memory cells and isotype class switch is controlled by:
T cells, cytokines, like IL-4

primary vs secondary immune response
Ig effector functions (6)
pathogen neutralization
agglutination(cells)/precipitation(soluble antigens)
complement(C’) fixation
inflammation=opsonization=cell lysis
antibody-dependent cellular toxicity
death by NK cells, neutrophils or eosinophils
opsonization
stimulated phagocytosis and agglutination
inflammation
granule release from mast cells—>allergies