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Outbreaks, Epidemiology, BLAST, ELISA Assay, Serial Dilutions, and Micropipettes
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What is an outbreak
A spread of a disease in an area that is not expected
What is epidemiology
The study of disease and outbreaks and other patterns
What is contact tracing
Finding how disease spread in the past and using that to find who will be infected next and break the chain of transmission
What are the ways a pathogen is transmitted
Coughing, sneezing, bug/animal bites, contaminated foods/objects, close contact
What information would you want to collect from a person who may have been exposed to an infectious disease
Exposure timing, the natural of contact, and a personal health background check
What is Patient Zero
The first person to spread a disease or to get infected
Why might it be difficult or impossible to determine who the actual Patient Zero was
Not everyone person infected shows symptoms, the incubation period might cause confusion, and it can be hard to remember every interaction
What does BLAST stand for
Basic Logical Alignment Search Tool
What is the purpose of using BLAST to analyze an unknown DNA sequence
To compare the unknown DNA sample to known biological sequences to find similarity
What does an E-value tell you about a BLAST match
The number of different alignments with a score equal to or better than an observed match that you expect to find by chance in a database of a given size (smaller is better)
If an unknown DNA sample has a 99% sequence identity with a known organism, what does this suggest about the unknown sample
The unknown sample belongs to the species or is a very close relative within the same genus
What does ELISA stand for
Enzyme-linked immunosorbent assay
What is the purpose of an ELISA assay
to detect and measure specific antibodies, antigens, proteins, and hormones in body fluid samples like blood, urine, or saliva
What is an antigen
A substance or molecule that triggers a immune response in the body
What is an antibody
Proteins produced by the immune system to find and neutralize foreign invaders like bacteria
How do antibodies recognize antigens
by locking onto specific target sites on foreign invaders using a precise chemical and structural fit
What is the purpose of the enzyme attached to an antibody in an ELISA
to make the conversion of a colorless substrate into a detectable signal
What happens when the enzyme’s substrate is added
A color change happens
What does a color change indicate in an ELISA
The presence of a specific antigen or antibody in the sample
What does a positive ELISA result mean
The test detected the target antibodies or antigens
What does a negative ELISA result mean
The test did not detect them
Why are positive and negative controls important in an ELISA
ELISA can make mistakes, and the controls are indicators that results are inaccurate if they fail
What would it mean if the positive control did NOT produce the expected result
The test is invalid
What is serial dilution
the method of lowering the concentration of a substance in a solution by repeating the same dilution factor over and over
Why would a scientist use serial dilutions
To reduce a highly concentrated substance into a more manageable level
If you mix 1mL of a sample with a 9mL of water, what is the dilution factor
1/10
If you perform a 1:10 dilution and then dilute that sample 1:10 again, what is the overall dilution
1/100
What happens to the concentration of a substance as you continue making serial dilutions
It decreases exponentially
What units are commonly used when measuring small volumes with a micropipette
microliters (𝝁𝐋)
What is the purpose of selecting the correct micropipette for a specific volume
For an accurate measurement or precision
Why should you never set a micropipette outside of its recommended volume range
It might not get the correct volume, and can lead to inaccurate results. It can also damage the micropipette
What is the difference between the first stop and second stop when using a micropipette
The first stop is to get rid of bubbles, the second stop is to get rid of the solution completely
Why should a new pipette tip be used when transferring between different samples
To avoid cross-contamination