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Amino Acid Backbone

Glycine

Alanine

Proline

Methionine

Valine

Leucine

Isoleucine

Phenylalanine

Tyrosine

Tryptophan

Serine

Threonine

Cysteine

Aspargine

Glutamine

Lysine

Arginine

Histidine

Aspartate

Glutamate

Which amino acids are nonpolar? (7)
glycine
alanine
proline
methionine
valine
leucine
isoleucine

Which amino acids are aromatic? (3)
phenylalanine
tyrosine
tryptophan

Which amino acids are polar uncharged? (5)
serine
theonine
cysteine
asparagine
glutamine

Which amino acids are positively charged? (3)
lysine
arginine
histidine

Which amino acids are negatively charged? (2)
asparatate
glutamate

What are the 3 letter and 1 letter codes for glycine? (2)
Gly
G
What are the 3 letter and 1 letter codes for alanine? (2)
Ala
A
What are the 3 letter and 1 letter codes for proline? (2)
Pro
P
What are the 3 letter and 1 letter codes for valine? (2)
Val
V
What are the 3 letter and 1 letter codes for leucine? (2)
Leu
L
What are the 3 letter and 1 letter codes for isoleucine? (2)
Ile
I
What are the 3 letter and 1 letter codes for methionine? (2)
Met
M
What are the 3 letter and 1 letter codes for phenylalanine? (2)
Phe
F
What are the 3 letter and 1 letter codes for tyrosine? (2)
Tyr
Y
What are the 3 letter and 1 letter codes for tryptophan? (2)
Trp
W
What are the 3 letter and 1 letter codes for serine? (2)
Ser
S
What are the 3 letter and 1 letter codes for threonine? (2)
Thr
T
What are the 3 letter and 1 letter codes for cysteine? (2)
Cys
C
What are the 3 letter and 1 letter codes for asparagine? (2)
Asn
N
What are the 3 letter and 1 letter codes for glutamine? (2)
Gln
Q
What are the 3 letter and 1 letter codes for lysine? (2)
Lys
K
What are the 3 letter and 1 letter codes for histidine? (2)
His
H
What are the 3 letter and 1 letter codes for arginine? (2)
Arg
R
What are the 3 letter and 1 letter codes for aspartate? (2)
Asp
D
What are the 3 letter and 1 letter codes for glutamate? (2)
Glu
E
What types of interactions will the nonpolar and aromatic groups participate in? (2)
hydrophobic interactions
van der Waals
What types of interactions will the polar charged groups participate in? (3)
hydrogen bonding
ionic bonds/salt bridges
van der Waals
What types of interactions will the polar uncharged groups participate in? (2)
hydrogen bonding
van der Waals
What is the general pKa range for the COOH groups?
~2-2.5
What is the general pKa range for the NH2 groups?
~9-10
What is the general pKR range for Glu and Asp?
~4
What is the pKR range for Arg and Lys?
>10.5
What is the general pKR range for His?
~6
What group does pK1 correspond to?
COOH
What group does pK2 correspond to?
NH2
What is the pKR of cysteine?
8.18
What is the pKR of tyrosine?
10.07