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Respiratory System Infections
Most prevalent type of infection
Due to ease of transmission
Inanimate objects – phones, keyboards, doorknobs
Respiratory droplets (inhalation)
Nasal spray (sneezes) – 5-6 ft
Varies from annoyance to deadly
Divided into infections of
Upper respiratory (head/neck)
Very common
Uncomfortable but not life threatening
Have normal microbiota – nose, throat
Streptococci very common in throat
~30% of healthy people carry Staphylococcus aureus in their nose
Sterile sites
Conjunctiva
Sinuses
Tear ducts
Middle ear
Lower respiratory (Chest)
More serious, can be life-threatening
No normal microbiota
Defenses
IgA, macrophages, mucociliary escalator
Bacterial Infections of Upper Respiratory System
Generally trivial and do not require treatment
More serious, and can cause serious complications in those immunocompromised, very young and the very old
pinkeye, earache, and sinus infections
Occurrence is common, often from same agent
Common secondary infections
Common causative agents:
Streptococcus pneumoniae
Haemophilus influenzae
pinkeye
conjunctivitis – bacterial or viral pathogen
Tears, redness of conjunctiva, swollen eyelids
Large amounts of pus
Viral conjunctivitis less pus discharge and eye swelling
Bacterial conjunctivitis highly contagious
earache
Ears
Outer ear – has normal microbiota
Otitis externa (infection of outer ear)
Causes: S. aureus, C. albicans and Gram (–) opportunistic pathogens (Proteus and P. aeruginosa)
Inner and middle ear are sterile
Otitis media (infection of middle ear)
Common in young children
Mild fever, severe earache due to fluids in eardrum
Pressure may cause eardrum to rupture
sinus infections
Sinus – normally sterile
Sinusitis – sinus infection
Inflammation leads to symptoms
Facial pain, pressure; headache, malaise, thick green nasal discharge may develop
Streptococcal Pharyngitis (“strep throat”)
Causative Agent = Streptococcus pyogenes
Gram-positive streptococci
Group A streptococcus (GAS)
β-hemolytic on blood agar
Complete hemolysis of RBCs
Systemic → hemolytic anemia (deadly)
Virulence due to virulence factors
Adhesins, avoidance of host defenses
Capsules
M protein
Exotoxins (pyogenic)
Pus-forming
Spread by respiratory droplets or contaminated food
Characterized by:
Sore throat, difficulty swallowing, fever
Red throat with pus patches
Confirmation via diagnostic tests and throat culture
Rapid antigen test – using antibodies to detect bacteria
Throat culture - growing bacteria
Fast-moving
Prompt antibiotic treatment to prevent complications
10 days of antibiotics
Penicillin or erythromycin
Post-Streptococcal sequelae
1. Glomerulonephritis
Kidney disease - infection and inflammation of glomeruli
2. Rheumatic fever
Inflammatory disease that affects heart (damages heart valves), joints, skin, and brain
Diphtheria
Causative Agent = Corynebacterium diphtheriae
Gram-positive, pleomorphic (rod or club shaped) bacteria
Disease due to diphtheria toxin
Produce toxin due to lysogenic conversion
Toxins inhibit ribosome (protein synthesis) → cell death
Symptoms
Mild sore throat, slight fever, fatigue
Neck swelling and formation of pseudo membrane (whitish membrane) on tonsils, throat or in nasal cavity
Transmission
Air or fomites
Treatment
Antibiotics to eliminate bacteria
Penicillin and erythromycin
Antiserum to absorb toxin
~10% mortality even with treatment
Prevention
Immunization with inactivated toxoid very effective
DTaP, Tdap
Booster every 7 years
Viral Infections of the Upper Respiratory System
Very common infections
Average person in U.S. gets 2-5 per year
Infections usually subside without treatment or permanent damage
Can weaken defenses
Allow for more serious bacterial infections (secondary infections)
Common cold:
Most common infectious disease in humans
Accounts for more than half of upper respiratory infections
Causative Agents: “cold viruses”
30-50% caused by rhinoviruses
Only need a few virions to infect
Symptoms:
Malaise, sore throat, runny nose, cough, hoarseness
Fever only with secondary bacterial infection
Symptoms gone within a week
Spread by close contact with infected person or nasal secretions
Prevention: Hand washing, keeping hands away from face
Bacterial Infections of the Lower Respiratory System
Less common, more serious complications
Pneumonia
Fluid accumulation in lungs (pus and blood fills alveoli) → inflammatory response
Can be deadly
Causative agent: bacterial, viral, fungal
Diagnosed by chest x-ray (white shadows)

Pneumococcal Pneumonia
Causative agent = Streptococcus pneumoniae
Gram-positive, diplococcus (pneumococcus)
Thick polysaccharides capsule responsible for virulence
Account for 1/3 of adult community-acquired pneumonia in U.S.
Kills about 1 out of 20 people who get it
Signs and Symptoms:
Runny nose and upper respiratory congestion
Then,
Cough with rust color sputum from blood
High fever and chill
Severe chest pain
Breathing becomes shallow and rapid
Cyanosis results - skin becomes dusky colored due to poor oxygenation
Antibiotic treatment
Penicillin and erythromycin
Drug resistant strains increasingly common → outbreaks
Prevention by vaccine
Pneumococcal polysaccharide vaccine (PPSV23)
Protects against 23 types of pneumococcal strains
Recommended for people at greater risk
65 years and older
The very young
with certain health problems (heart/lung disease)
With a weakened immune system
Klebsiella Pneumonia
Common nosocomial infection, especially in immunocompromised individuals
Causative agent = Klebsiella pneumoniae
Encapsulated Gram-negative rod, mucoid colonies
Normal microbiota of GI tract, mouth and throat
Causes severe pneumonia → scars in lungs
Distinguished from pneumococcal pneumonia by repeated chills, production of bloody gelatinous sputum
50% to 80% mortality in untreated patients
Patients die sooner than those with other types of pneumonia
Treatment with antibiotics, but strains becoming resistant
Those circulating in hospitals, and nursing homes
No vaccine available
Mycoplasmal Pneumonia
Causative agent: Mycoplasma pneumoniae
Small, lacks cell wall which is why they’re pleomorphic, slow growth
Small infecting dose, inhaled
Attaches to and interferes with function of cilia → inflammation in the lungs
inflammation leads to fluid accumulation and leads to pneumonia
Leading pneumonia of children and young adults
Mild disease, aka “walking pneumoniae” or atypical pneumonia
First symptoms: Sore throat, chills, fever, headache, muscle pain, fatigue
Later symptoms: Dry cough and mucoid sputum
Treatment and Prevention:
Antibiotics that do not target cell wall
No vaccine available *only one is for pneumocoocal pneumoniae
Pertussis (Whooping Cough)
Causative Agent = Bordetella pertussis
Small, aerobic, encapsulated Gram-negative rod
Spread from adult to children
Attach to and destroy ciliated cells via pertussis toxin
Leads to increased mucus formation → decreased ciliary action
Cough - only mechanism for clearing secretions bcuz its hard for mucus covered cilia to move
Highly contagious, spread via air droplets
Symptoms
Paroxymal coughing – violent, uncontrollable coughing followed by characteristic “whoop”
Exhaustion, vomiting and seizure may occur
Death due to pneumonia from B. pertussis or secondary infections
Pertussis in young children can be deadly
Often require intensive support care
Treatment:
Erythromycin in the early stages
Prevention
Vaccination
Injections at 6 weeks, 4, 6, and 18 months (DTaP)
Boosters required every 7 years (Tdap)
Recent outbreaks due to lapse in vaccination in adults bcuz they dont get their booster
then they get infected and spread it to young children
Infants under one year old are at greatest risk for serious disease and death
Tuberculosis
Causative agent = Mycobacterium tuberculosis
Strict aerobic, Gram-positive rod
Slow growing (chronic disease)
Acid-fast bacteria
Waxy cell wall (mycolic acids)
Primarily infects lungs
Can spread and cause disease in other tissues (bones, kidneys, joints, central nervous system)
Signs/symptoms
Fever with night sweats
Progressive weight loss
Chronic productive cough
Sputum often blood streaked
Once common; cases declined as living standards improved
1980’s – rise in cases due to AIDS epidemic and drug-resistant strains
In homeless and HIV infected individuals
Airborne - Hard to contain
2024 Global statistics
TB - leading cause of death from a single infectious agent; top 10 causes of death
10.7 million new cases
1.23 million deaths (150 000 among people with HIV)
TB - leading killer of people with HIV in 2024
MDR-TB remains a public health crisis
Epidemiology
13 million American infected
Highest among non-white, elderly, poor people
Small infecting dose (Ten or less inhaled bacteria)
Tuberculin skin test
Used to detect those infected
Positive test does not indicate active disease
Treatment
First-line antibiotic for active tuberculosis
Combination of rifampin (RIF), isoniazid (INH), pyrazinamide (PZA), and ethambutol (EMB) given for 2 months; then INH, RIF for another 4–7 months
For MDR-TB
Treatment is longer (18-24 months)
Second-line drugs may be used
XDR-TB (extensively drug-resistant TB): resists both first and many second-line drugs
New regimen of medications used
Prevention
Vaccination
Bacillus of Calmette and Guérin (BCG)
Attenuated virus derived from Mycobacterium bovis
Gives partial immunity
Not given in United States
Interferes with TB test
Not safe in severely immunocompromised patients
Viral Infections of the Lower Respiratory System
Most are RNA viruses
Infect more individuals, potential for serious outcomes
Influenza
Causative Agent = Influenza A virus
Enveloped virus in Orthomyxoviridae family
Single-stranded RNA genome in 8 segments
Spikes in envelope
H spike – hemagglutinin
Attaches to receptors of host cell
N spikes – neuraminidase
Destroys host receptor and releases virion from host cell
Signs and symptoms
Headache
Fever
Sore throat
Muscle pain
Dry cough
Subtypes based on H and N spikes
H5N1: 1997 “avian flu”
H1N1: 2009 “swine flu”
Pathogenesis
Acquired through inhalation of respiratory droplets or from contaminated fomites
Virus infects and replicates in ciliated respiratory epithelial cells
Viruses leave host cell by budding
Infected cells die and slough off
Destroy mucociliary escalator
Epidemiology
Infects ~20% of humans annually; overall numbers of death is high
Most deaths due to secondary infections
In the U.S, the flu can be a major public health burden
Epidemics occur every year
CDC estimates that influenza results in: deaths, hospitalizations, illnesses