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antibiotics
chemical compounds synthesized by one microbe to selectively kill other microbes
Kirby-Bauer assay
disk diffusion test to measure the zone of inhibition around filtered-paper disks impregnated with antibiotics
antibiotics that target cell wall synthesis
penicillins, cephalosporins, bacitracin, vancomycin
antibiotics that target cell membrane integrity
polymyxins, gramicidin (antibacterial), amphotericin, imadazoles (anti-fungal)
antibiotics that target mycolic acid synthesis
isoniazid (mycobacterium tuberculosis)
antibiotics that target DNA replication and integrity
quinolones, metronidazole, nitrofurantoin, some antiviral compounds
antibiotics that target transcription
rifampin, fidaxomicin (clostridioides dificile)
antibiotics that target protein synthesis
chloramphenicol, tetracyclines, aminoglycosides, macrolides, lincosamides
antibiotics that target intermediary metabolism
sulfonamides, trimethoprim (inhibit folic acid synthesis), bedaquiline (inhibits ATP synthase in M. tuberculosis), platensimycin (inhibits bacterial fatty acid synthesis)
What URT viral infection has 200 viral subtypes?
the common cold
What is the most common cause of common colds (70-80%)?
rhinoviruses
viral sinusitis
infection of the upper airways, inflammation/congestion of the sinuses, resolves on its own
respiratory syncytial virus (RSV)
transmitted from person to person, most common cause of bronchiolitis and pneumonia among infants and children under 1 age
How does RSV occur?
comes in contact with mucous membranes of eyes, with the mouth or nose, through inhalation of droplets from a sneeze or cough
What are influenza virus types based on?
antigenic determinants
Type A influenza
cause of epidemics and occasional pandemics, can infect animals and people, constantly changing
Type B influenza
found mostly in humans and results in milder illness, doesn’t cause pandemics
Type C influenza
causes only mild disease, doesn’t cause epidemics or pandemics
Hemagglutinin
transmembrane protein that forms the spikes on the viral surface, binds to N-acetylneuraminic (sialic) acid on the surface of the respiratory cells to gain entry
neuraminidase
on surface releases budding virus from host cell
M2
releases viral genome into host cell cytoplasm
antigenic shift
eight RNA segments of each flu genome will uncoat, mix in the cytoplasm, resort to form a new influenza virus containing a new form of the hemagglutinin gene
antigenic drift
smaller mutations in the HA and NA genes
What does coronavirus look like?
single-stranded, positive-sense, enveloped RNA virus
severe cases of covid include a
cytokine storm
many cases of covid are
asymptomatic and can be transferred in asymptomatic form
what is croup also known as
laryngotracheobronchitis (LTB)
what age group is at the highest risk for contracting croup?
6 months - 5 years old
what causes croup
parainfluenza virus types 1 & 2
symptoms of croup are
fever, running nose, “barking” cough (caused by swelling of larynx)
viral URT infections
common cold, viral sinusitis
viral LRT infections
RSV, influenza, COVID, croup
bacterial URT infections
otitis media, bacterial sinusitis, diphtheria, whooping cough, bronchitis, pharyngitis, tonsilitis, laryngitis, peritonsillar abscess
bacterial LRT infections
pneumonia, Legionnaire’s disease, tuberculosis
otitis media can be caused by both
viruses and gram negative/positive bacteria
what is the most common sick child visit?
otitis media
3 bacterial species that frequently cause acute otitis media?
streptococcus pneumoniae, haemophilus influenzae, moraxella catarrhalis
bacterial sinusitis
often accompanies middle ear infection in children and pneumonia in adults, inflammation/congestion obstructs the sinuses and mucus flow, treated with antibiotics
bacterial sinusitis symptoms
pressure behind the eyes, pain in the face, foul-smelling nasal discharge/breath
streptococcal pharyngitis
strep throat
streptococcal pharyngitis transmission
spreads through person to person contact and indirect contact with items contaminated by secretions
streptococcal pharyngitis symptoms
sudden onset of high fever and sore throat, tender enlarged cervical lymph nodes, exudate on tonsils, absence of a cough
streptococcal pyogenes
produces exotoxins called streptococcal pyogenes exotoxins (SPEs)
what do SPEs cause
scarlet fever: fever and red rash (head and neck, trunk, then legs) and strawberry tongue
streptococcal pharyngitis diagnosis
rapid strep test - immunoassay technology and highly specific for S. pyogenes
acute rheumatic fever (sequalae of post streptococcal infections)
young children (4-9 years old), high fever, damage to heart, joints, skin, or nervous system, cross reactive antibodies, T-cells, and complement, glomerulonephritis (kidney disease)
what causes diptheria
corynebacterium diphtheria, gram-positive rod
diphtheria characterization
presence of pseudomembrane
how is diphtheria treated
simultaneous antibiotics and antitoxins
diphtheria vaccine
inactivated diphtheria toxin that is part of DTap vaccinations
what causes whooping cough
gram-negative bacillus Bordetella pertussis
whooping cough transmission
inhalation of acquired droplets coughed by someone with illness
how long is whooping cough incubation period
7-21 days
whooping cough stages
catarrhal, paroxysmal, convalescent
catarrhal stage
symptoms of upper respiratory infection
paroxysmal stage
violent paroxysmal (rapidly repeatedly) cough, followed by a deep breath that makes a whooping noise
convalescent stage
paroxysms gradually disappear during the next 2-3 weeks as patient recovers
whooping cough (pertussis) vaccine for young children
DTap: 2, 4, & 6 months, 15-18 months, 4-6 years
whooping cough (pertussis) vaccine for preteens
TDap: 11-12 years
whooping cough (pertussis) vaccine for pregnant women
TDap: 27-36th week of each pregnancy
whooping cough (pertussis) vaccine for adults
TDap: anytime for those who have never received it, includes adults with COPD or asthma
bronchitis is
acute and self-limiting and has multiple viral and bacterial etiologies
productive cough
only presenting symptom of bronchitis
acute bronchitis
suspected when patient’s cough persists for more than 5 days
pneumonia
infection that causes lung inflammation
community acquired pneumonia
acquired outside of a hospital
atypical pneumonia
affect multiple organs, usually produce a normal WBC count, and symptoms gradually appear and mimic URT infections at the onset
atypical pneumonia pathogens
mycoplasma pneumonia, legionella, chlamydophila
typical pneumonia pathogen
streptococcus pneumoniae
legionellosis (Legionnaire’s disease) pathogen
legionella pneumophila; gram-negative bacterium
what does legionella pneumophila cause
atypical pneumonia
legionellosis transmission
contaminates water sources (lakes, hot water/AC systems of large buildings, etc), transmission via inhalation of contaminated water droplets
characteristic of legionellosis
after phagocytosis, bacterium prevents the fusion of the phagosome with the lysosome
mycoplasma pneumoniae
lacks a rigid cell wall and usually exist in filamentous form; smallest known species of bacteria
mycoplasma pneumoniae symptoms
headache, malaise, low-grade fever, progression to nonproductive cough, chills
most common cause of hospital aquired pneumonia
pseudomonas aeruginosa
pseudomonas aeuroginosa features
opportunistic, gram negative pathogen; large # of virulence factors; major contributor to pneumonia and mortality in cystic fibrosis patients
mycobacterium tuberculosis
acid-fast bacteria, cases are on the rise in developed nations due to HIV and a growing indigent population
multidrug resistant (MDR) tuberculosis
produces rapid onset (fulminant) and fatal disease among patients with HIV; highly infectious even to healthy people without HIV
tuberculosis transmission
person to person (no animal reservoir); aersolizing of respiratory tracts
tuberculosis pathogenesis
bacteria enter lung, are phagocytized by macrophages, and survive sheltered within modified phagolysosomes
how does a delayed-hype hypersenstitivity reaction to TB develop?
small hard tubercules (granulomas) form around the site of infection, tubercules develop into caseous lesions that have a cheese-like consistency and can calcify into hardened Ghon complexes seen on x-rays
latent tuberculosis
bacilli contained by immune systems; not infectious
primary/active TB
characterized by a productive cough that generates sputum, fever, night sweats, and weight loss
patients with active TB are
contagious
TB identification features
calcified Ghon complex in x-rays, cavity formations in the lungs on x-ray
gastritis
inflammation of stomach lining
gastroenteritis
inflammation along the GI tract
enteritis
inflammation of the small intestine
enterocolitis
inflammation of the colon and small intestine
colitis
inflammation of the colon
osmotic diarrhea
intestinal osmolarity is higher than internal osmolarity, causing water to leave cells
what kind of pathogens cause osmotic diarrhea
that prevent nutrient absorption
secretory diarrhea
increased in secretion causes electrolytes to leave, leading to imbalance
secretory diarrhea pathogen
pathogens that cause ion secretion cause secretory diarrhea
inflammatory diarrhea
inflammatory cytokines damage mucosal cells and prevent absorption of nutrients and water
inflammatory diarrhea pathogens
shigella and salmonella
motility related diarrhea
food moves too quickly through the intestinal tract and nutrients aren’t absorbed
motility related diarrhea pathogens
enterotoxins and rotavirus