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Biology
the study of life
zoology
the branch of biology that deals with animals and animal life
invertebrates
without a vertebral column, 97% of animals on planet
prokaryote
single-celled organism without a nucleus, mitochondria, or other membrane-bound organelles, began ~3.5 bya
Abiogenesis
hypotheses for the advent of life, most likely an RNA world
primeval soup, deep=sea hydrothermal vents, or exoplanetary introduction
metazoa
ingestive, heterotrophic, sexual, multicellular eukaryotes that form tissues, evolved when oxygen stabilized
Ediacaran Period
worldwide invertebrate fauna, 635-541 MYA
Cambrian Explosion
541-520 MYA, rapid increase in biodiversity and abundance, Treptichnus pedum bioturbation which allowed for oxygenated sediments, rapid speciation from competition
Stromatolites
layers of microbial mats, first to preform photosynthesis, bio-accretionary structures
Primary endosymbiosis
2.5-2 BYA, alphaproteobacteria symbiosis generates mitochondria (becomes the chloroplast), first eukaryotic multicellular
Great Oxygenation
2.5-2 BYA, 1st mass extinction, oxygenation grants atmospheric protection from UV (ozone), oxygen metabolism is more efficient
Paleozoic
270 MYA, ~90% of species go extinct in Permian Extinction (Volcanic eruptions), increased: temperature and atmospheric CO2, decreased: pH and O2
Cretaceous-Tertiary Mass Extinction (K-T)
75% extinct, meteor impact and volcanism, sulfur dioxide released (decreased oceanic pH), cooling of atmosphere
Adaptive Radiation
small-bodied generalist survivors repopulating devastated environments
Monophyletic
groups/clades that include all descendants of a stem species
Paraphyletic
group that has the same evolutionary origin but does not include all the descending groups
Polyphyletic
composite groupings of organisms without true biological rationale/shared biological ancestor
Apomorphy
an evolutionary innovation present in a biological lineage but not with its ancestral group
Synapomorphy
shared apomorphy with 2 or more groups of organisms
Bacteria
no membrane enclosed organelles or nuclei, no cytoskeleton
Archaea
anaerobic and aerobic, methane-producing organisms, no membrane enclosed organelles or nuclei, no cytoskeleton
Protista
unicellular eukaryotes, have a nucleus, endomembrane, cytoskeleton, and mitochondria
Fungi
chitinous wall around vegetative fungal cells
Plantae
unicellular, multicellular, photosynthetic
Animalia
multicellular, heterotrophic, tissue layering eukaryotes
Specific heat
the amount of energy required to heat a substance, ocean is more stable since it has 5x the specific heat as the atmosphere
Carbonate buffering
carbonate ions balance excess CO2 content by re-speciating into bicarbonate and carbonic acid, resists changes in CO2 concentrations and pH
Niche
a set of all the conditions of a single species in a certain environment
Fundamental niche
complete range of environmental conditions where a species could survive, grow, and reproduce if no interspecific interactions (competition)
Realized niche
actual range of environments used by a species, part of the fundamental niche (interactions shape habitat use)
Niche partitioning
similar species evolve to use different resources or inhabit different parts within the same environment
Continental shelf
0-1,000km from shore, <200m deep, high biological productivity
Continental edge
rapid change in bathymetry, transition zone between shelf and slope
Continental slope
region with slope of 4-6%, 200-300m deep
Abyssal plain
region with no light, >3,000m deep, productivity by chemosynthesis
Supratidal (splash)
area above mean high tide, flooded by storms
Intertidal (eulittoral)
dynamic area between low and high tide
Subtidal (sublittoral)
area below low tide line, never uncovered
Neritic
pelagic region over continental shelf
Oceanic
pelagic region over continental shelf and beyond
Photic
water column with enough sunlight for photosynthesis (0-200m)
Aphotic
water column with not enough sunlight for photosynthesis
Disphotic
twilight zone, transition region between photic and aphotic zones
Compensation depth
rate of respiration = rate of photosynthesis
Critical depth
integrated rate of respiration = integrated rate of photosynthesis
Bernoulli’s principle
as the speed of a moving fluid increases, its internal pressure decreases
Reynolds number
a dimensionless term that describes the fluid flow patterns in different physical situations; the ratio of inertial to viscous forces acting on an object within a fluid (smaller organisms feel more viscous → lower Re)
how an organism feels their environment
Epifaunal
organisms that live on top of sediment/substrate
Infaunal
organisms that live within sediment
Interstitial
living between sand grains
Meiofauna
organisms living between sand grains (<0.5mm)
Errant
active, motile organism
Sessile
organism firmly attached to the substrate
Sedentary
unattached/weakly attached organism, do not move much
Holoplankton
organisms that remain in plankton for whole life
Meroplankton
organisms that are temporary members of plankton community
Choanocyte
collar cell in sponge reminiscent of choanoflagellate
Cilia
shorter more abundant cell structure for movement, feeding, digestion
Flagella
longer, fewer cell structure for movement, digestion, gas exchange, reproduction
Oxygen diffusivity
only 1 mm into tissues until fully utilized, causes a problem with getting bigger (diffuses too fast)
Solutions to diffusion problem
fold cell surface, flatten, become thread like to increase SA, or become multicellular
Ontogeny
unicellular zygotes transform into multicellular individuals and eventually into reproducing adults (embryogenesis is an example)
Embryogenesis
the growth and development of embryo
Vitellogenesis
yolk production
Zygote
fertilized egg
Blastomeres
cells resulting from initial division (cleavage) of a zygote
Holoblastic
cleavage planes pass completely through cell, blastomeres fully separated by thin membrane, normally in isolecithal (evenly distributed yolk, small)
Meroblastic
cleavage planes do not pass completely through cell, blastomeres are not separate, typically in telolecithal (yolk concentrated on one end)
Macromeres
larger cells at vegetal pole, unequal cleavage
Micromeres
smaller cells at animal pole, unequal cleavage
Radial cleavage
longitudinal and transverse divisions arrange blastomere in rows perpendicular or parallel to A-V axis
Spiral cleavage
successive diagonal division of cells, during transition from 4 to 8 blastomeres, spiral arrangement around A-V axis
Blastula
embryonic stage preceding the formation of the embryonic germ (tissue) layers
Blastocoel
space within the blastula/primary body cavity
Coeloblastula
hollow ball of cells, usually 1 cell layer thick, has blastocoel in middle
Steroblastula
solid ball of blastomeres
Discoblastula
cap of cells at the animal pole
Periblastula
hollow ball of cells retaining a non-cellular yolk
Coelom
true body cavity
Protostome
mouth formed first during gastrulation, spiralia and ecdysozoa
Deuterostome
anus formed first during gastrulation
Gastrulation
formation of the embryonic germ layers and resulting embryo, process that separates the Metazoa from the Protists, forms initial sheets of cells
Ectoderm
outer layer, nervous system, outer skin
Mesoderm/Coelom
middle layer, coelomic lining, circulatory systems, internal support, musculature
Allows for locomotion (muscles and skeletons), feeding and digestion, excretion and osmoregulation, circulation and gas exchange, nervous system and sense organs, and reproduction
Triploblastic Metazoa
acoelomate: no cavity, mesoderm in solid mass of tissue
blastocoelomate/pseudocoelomate: fluid-filled body cavity, not fully lined by mesodermal tissue
coelomate/eucoelomate: fluid=filled body cavity fully lined with mesoderm, attaches to organs
Coelomate
true mesoderm is derived from the endoderm, others are from the ectoderm (not true mesoderm)
Endoderm
inner layer, gut
Osmoregulator
maintains ion/water balance independent of environment
Osmoconformer
ion/water balance varies with environmental salt content
Protogynous hermaphrodite
female transition to male
Protoandrous hermaphrodite
male transition to female
Propioceptor
senses self orientation to environment
Geoceptor
detects the pull of gravity, gives orientation
Hermaphroditic
each animal contains both ovaries and testes, can be simultaneous or sequential
Gonochoristic
having only testes or ovaries, separate sexes
Gastrula
embryonic stage where germ/tissue layers develop
Monophyletic
groups/clades that include all descendants of a stem species
Metamorphosis
process of transformation from an immature form to an adult form
Metameres
repeated sections in annelids, serial homology from teloblastic development
Proglottids
repeated sections of tapeworms, mature toward anus, gravid proglottids closer to scolex