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Cerebral Cortex Grooves
high surface area due to ‘raisin brain’ texture
Fissure: Deep Groove
Gyrus: bump or protrusion
Sulcus: Groove or indent
Bank of Sulcus: Side of a groove
Fundus: Bottom of a groove
Gray matter: Mostly cell bodies and Dendrites
White matter: mostly myelinated axons
Cortical Laminae (layers)
6 layers in humans, 5 in mice. First layer is the outermost, the 6th layer is closer to the core regions of the brain.
Cortical Columns
Cell growths across each cortical layer. Different columns in the same area can have different functions (e.g. right eye and left eye processing).
Major grooves of the Cerebral Cortex
Central Sulcus: cuts down the side of the cortex to the halfway point, down similar to a coronal cut.
Lateral (Sylvian) fissure: Cuts diagonally from the bottom left of the brain (side view) to separate frontal and temporal lobes.
Longitudinal fissure: Fissure running down from the front to the back of the brain, separating the hemispheres.
Parieto-occipital sulcus: runs deep into the brain near the back to separate parietal and occipital lobes.
Cingulate sulcus: Sulcus within the cortex that separates the limbic lobe from the upper layer lobes.
Wilder Penfield
Corticol topography to map brain area functions based on stimulation. Sensations, images, memories.
Penfield’s (Somato)Sensory Homunculus
Postcentral gyrus (after the postcentral sulcus): left side of brain- sensory on right side; vice versa. Sensations in various parts of the body when stimulated. Area 1,2, and 3 of Brodmann’s map.
Penfield’s Motor Homunculus
Precentral Gyrus (before the central sulcus): Motor movements on right side for left side of the brain; vice versa. Motor movements in various parts of the body when stimulated. Area 4 of Brodmann’s map.
Primary Auditory cortex
Beneath the Sylvian/lateral fissure near the postcentral gyrus, at the top of the parietal lobe. Areas 41 and 42 of Brodmann’s map.
Primary Visual Cortex
Back of the occipital lobe. Area 17 of Brodmann’s map,
Brodmann’s map
map of the cortex based on cell organization.
Primary Motor cortex: area 4
Primary somatosensory cortex: areas 1,2,3
Primary Auditory cortex: areas 41, 42
Primary Visual cortex: Area 17
Frontal Lobe
Prefrontal cortex: First part of the cerebral cortex, large.
Premotor cortex: After the prefrontal cortex, more lateral
Supplementary motor cortex: Medial areas where the premotor cortex is. More prominent in saggital cross-section
Primary motor cortex: Precentral gyrus, after the premotor cortex.
Damage:
Disorganized behavior
Disinhibition/inappropriate behavior
impaired abstract thinking, rigid thought
Perseveration (ex: continue to use a plan even if its not appropriate anymore)
Personality Change
Emotional iability (ex: rapid mood shifts)
Parietal Lobe
Contains primary somatosensory cortex. Integrates sensory information, internal states (intention, proprioception), Numerical cognition.
Damage:
left- apraxia (can’t execute tasks even if they want to and are able)
right- spatial neglect
Temporal Lobe
Superior temporal: Primary and Secondary Auditory cortex, Wernicke’s area (language comprehension)
Inferior temporal: Visual object recognition, Agnosia (failure to recognize smell, objects, people, shapes (senses work fine though)), prosopagnosia (face blindness)
Medial temporal: Emotional Processing (Amygdala), Kluver-Bucy syndrome (monkeys can’t display fears/anxieties), Memory (Hippocampus). Damage in humans: epilepsy disappears and then comes back. Obsession with genitals, behavioral issues
Occipital Lobe
Right hemisphere Cuneus: Lower left visual field
Right hemisphere Lingual Gyrus: Upper left visual field
Separated by the Calcarine Sulcus
Limbic Lobe
Connected to Emotions, other limbic structures
Anterior Cingulate Cortex (ACC): Emotion, pain-related motor movements, cognitive control/error detection, reward anticipation
Posterior Cingulate Cortex (PCC): Monitoring eye movements, Spatial Orientation, Memory
Parahippocampal Gyrus: Memory
Corpus Callosum
Interhemispheric communication. Very well organized between lobes (neat wirework)
Cholinergic Systems
Neurons release acetylcholine in the basal forebrain project to the cortex and limbic system.
ACl from the pons and midbrain project to the amygdala, thalamus, brainstem, and cerebellum.
- Includes Pedunculopontine Nucleus (PPN), Laterodorsal Tegmental Nucleus (LDT)
Dopaminergic Systems
Nigrostriatal System: Dopamine from the substantia nigra, projecting to the basal ganglia.
Mesolimbic system: Dopaminergic neurons from the Ventral Tegmental Area (VTA) to limbic structures/basal ganglia (e.g. Nucleus Accumbens)
Mesocortical system: VTA to cerebral cortex
Noradrenergic systems
Norepinephrine from the locus coeruleus to various parts of the brain.
Serotonergic system
Raphe Nuclei in the brain stem project serotonin to most parts of the brain. Can be influenced by the gut.
One ionotropic, many metabotropic effects (G-Protein). Different effects due to different receptors to serotonin.
Visible Light Transmission Microscopy
Observation by shining a light into the tissue.
- Euthanization of animal, removal of brain → stabilization with chemicals; water is removed with solvent (e.g. ethanol) → hardening (e.g. parrafin) → Microtome to slice the brain → Staining.
Stains:
NissI stain- cell bodies with dyes like Methylene Blue, Cresyl Violet
Myelin stain- highlights axon bundles with dyes like Luxol Fast Blue, Osmium Tetroxide
Golgi stain- Highlights all parts of a neuron with a silver-based compound
Fluorescence Microscopy
fluorophores are inserted into a tissue to highlight a structure
Two-Photon microscopy
A laser emits two photons simultaneously. A mirror focuses them; converge onto one spot. Fluorophores emit photons in response; detected by a sensor.
Electron Microscopy
Transmission electron microscopy (TEM): electron beam passes through a tissue to hit a phosphor plate and camera array. The tissue may be stained with heavy metals.
Scanning electron microscopy (SEM): electron beam converges onto the surface of the tissue. Electron backscattering is detected with sensors.
Computer Axial Tomography
X-ray emission passes through and is detected based on absorbance by dense tissue to map structures.
Magnetic Resonance Imaging (MRI)
detailed structural views. Works with large electromagnetic coils that align protons with strong magnetic fields. Smaller perpendicular coils send radiowaves to disrupt alignment, sending radio signals that are detected. Voxels are generated to create an image.
Diffusion Tensor Imaging (DTI)
Displays only axons, showing directions based on color. Isotropic H2O movement is constrained within the axon; anisotropic movement along axons. Water movement is tracked in the region of interest.
Lesion-related techniques
Ablation- Removal or destruction of a part of a tissue; toxin or surgery
Lesion- Disruption of or damage to function of an organ- can be natural or surgery
Temporary lesion- a reversible lesion by chemical or cryogenic methods. Chemical reduces activity, cryogenic uses the cold to reduce activity.
Fiber Sparing- collateral damage when creating lesions.
Lesion-causing techniques
Aspiration- removal of a portion of a brain (e.g. by suction). Non-fiber sparing.
Excitotoxic- Killing a neuron by introducing a neurotoxin. Fiber Sparing.
Thermal- heating brain tissue to destroy it, by laser or by heating a tool. Non-fiber sparing.
Knife cut- transect brain tissue. Non-fiber sparing.
Chemical- injection of a chemical to reduce brain neuron activity. Fiber sparing; reversible.
Cryogenic- Cooling a region of the brain (cryoloop, cryotips) to reduce activity. Non-fiber sparing; reversible.
Stereotaxic surgery
Sedate rat → cut open scalp → drill hole in skull over area to be lesioned → Place rat in the stereotaxic device- get animal to bite and immobilize with ear bars → use skull plate sutures to determine locations (e.g. Bregma- coronal and saggital suture landmarks).
Sham controls- keep everything constant except for the experimental treatments.
Transcranial Magnetic Stimulation (TMS)
Intense magnetic fields to inactivate/activate neurons; temporary lesions.
Repeated stimulation (rTMS): can be used for depression, hallucinations.
Continuous theta-burst stimulation (cTMS) reduces cortical activity
Intermittent theta-burst stimulation (iTMS) increases cortical activity
Single-cell recording
Recent innovation- can screw into the brain for moving animals. Microelectrode is inserted to measure a single neuron’s activity.
Multi-cell recording: 128 Microwire array into the brain too.
Electroencephalography (EEG)