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Bio Chapter 3

  • The Molecule that Supports all Life

    • Water is the only substance that can exist in the natural environment in all 3 states

    • Water’s unique emergent properties make earth suitable for life

    • Structure of water allows it to interact with other molecules (be available for any large molecules’ broken and empty bonds)

    • Helps with the formation of different compounds/photosynthesis

    • It is an electron donor

  • Polar Covalent Bonds in Water Molecules Result in Hydrogen Bonding

    • Electrons (overall charge) are unevenly distributed (more attracted to the oxygen ion), making it a polar molecule with dipoles

    • Its polarity allows it to interact and form hydrogen bonds with other substances

    • Water molecules have a small charge that attracts it to others like itself

    • COHESION: Attraction to others like itself

    • ADHESION: Attraction to different substances than itself

  • 4 Emergent Properties of Water That Contribute to Life

    • Cohesive behavior

    • Ability to moderate temperature

    • Expansion upon freezing

    • Versatility as a solvent

  • The Cohesion of Water Molecules

    • Hydrogen bonds hold water molecules together, creating cohesion

    • Cohesion & adhesion allows the water in plants to move against gravity

    • Adhesion is in transpiration (as roots take up water to the leaves)

      • Capillary action = water going up a plant

      • Evaporation also pulls water upwards

    • Spheres take the least amount of energy (why water forms globs in space)

      • Tendency towards chaos/disorder + maintain energy (why it is a sphere)

    • Surface tension is the measure of how difficult it is to break the surface of a liquid

    • Water has an unusually high surface tension due to hydrogen bonding and cohesiveness

  • Moderation of Temperature by Water

    • water absorbs heat from warmer air and releases that heat into colder air (why regions beside lakes are cooler = because water is absorbing the heat)

    • Water can hold onto heat for long periods of time & release/absorb a large amount of heat with only a slight change in its own temperature (changing its state)

    • Temperature & Heat

      • Kinetic energy = energy in motion

      • A lot of energy is required to break water’s hydrogen bonds (cohesion) in large numbers

      • Thermal energy = kinetic energy’s association with the random motion of atoms and molecules

      • Heat = thermal energy being transferred from one body to another

        • Enzymes are picky with pH and temperature (water has a huge temperature range)

      • A calorie (cal) is the amount of energy required to raise 1g of water by 1 degree C

        • Also the amount of heat released when 1g of water cools

      • Joule is another unit of energy

  • ^^Water’s High Specific Heat ^^

    • The amount of heat that must be absorbed or lost for 1g of that substance to change by 1 degree C.

    • Specific heat of water is 1 cal/(g x C)

    • Rubbing alcohol has a lower high specific heat = evaporates quicker

    • Water resists changing its temperature because of its high specific heat

      • Hydrogen bonding breaks = heat is absorbed

      • Hydrogen bonds form = heat is released

      • High specific heat limits water’s temperature fluctuations to which it can still sustain life

  • Evaporative Cooling

    • Evaporation (vaporization) = transition from liquid to gas

    • The heat of evaporation = the heat required for 1g of a liquid to be converted into a gas

    • As the liquid evaporates, its remaining surface cools = evaporative cooling (the heat is released)

      • Helps stabilize temperatures in organisms and bodies of water

      • Ex. sweating (reduction of heat energy)

  • Floating of Ice on Liquid Water

    • Ice floats in water because the hydrogen bonds are more “ordered”, making ice less dense than water

    • Water is densest at 4 degrees (ex. bottom of the lake)

    • If ice sank to the bottom of water bodies, the entire water body would freeze (ice formed at the top would keep sinking down)

    • Global warming is affecting water bodies (heatsinks), making them unable to properly absorb heat

      • Objects around it are then heating up (ex. icebergs)

      • Creating challenges for animals that rely on ice

  • Water: The Solvent of Life

    • Aqueous solution = water is the solvent

    • Water is a versatile solvent due to its polarity

      • Ionic compounds can dissolve in water because its ions are surrounded by water molecules (ie. hydration shell/shield)

        • Ex. Glucose powder gets its molecules bent into rings when dissolved in water

    • Water can dissolve non-ionic polar molecules + very large polar molecules if they have ionic/polar regions

  • Hydrophilic and Hydrophobic Substances

    • Hydrophilic = affinity for water

    • Hydrophobic = no affinity for water

      • Ex. oils because they have non-polar bonds

      • Oils and other non-polar molecules are the main substances for cell membranes

    • Ex. Phospholipid Bilayer

      • Hydrophilic heads allow the cell to live in the water/in the body

      • The charge on the heads attract it together (cohesion)

      • Hydrophobic tails: water-soluble materials can not bypass the tails unless there is a carrier/receptor that brings it inside

      • If tails were on the outside, we would not survive (the cell would not be able to survive in water) and we would be oil-based organisms

      • If there is a slight charge, it is hydrophilic, if there is no charge, it is hydrophobic and non polar

  • Solute Concentrations in Aqueous Solutions

    • Molecular mass = sum of all atoms’ masses in a molecule

      • of entities = avogadro’s number

    • Molarity (M) = # of moles of solute/L of solution

    • Ex. Vinegar in salad dressing = helps the hydrophobic vegetables to break down/have a change in pH

  • Acidic and Basic Conditions Affect Living Organisms

    • A hydrogen atom in a hydrogen bond between 2 water molecules can shift between one and the other

    • Molecule that lost the proton = OH-

    • Molecule that gained a proton = H3O or H+

    • All enzymes are proteins, but not all proteins are enzymes

    • HCL is in stomach to lower pH (ex. of pepsin)

    • Amylase needs a neutral place to work (mouth)

    • Lower pH = more hydronium/hydrogen ions

    • High pH = more OH ions

    • When CO2 dissociates in water, it becomes carbonic acid or hydrogen carbonate

    • Changes in concentrations of H and OH can drastically affect the chemistry of a cell and affect the organism

    • Concentration of H and OH in pure water is the same

  • Acids and Bases

    • Acid = increases the H concentration of a solution

    • Bases = reduces the H concentration of a solution

    • Strong acids and bases dissociate completely in water

    • Weak acids and bases reversibly release and accept back H ions but can still shift the H and Oh away from neutrality

    • Most bio fluids have a pH of 6-8

      • Inside intestine = 8 (water is absorbed, lining is thinner, and enzymes need s pH of 8)

  • ==Buffers ==

    • The internal pH of most living cells is close to 7

    • Buffers are substances that limit changes in concentrations of H and OH in a solution

    • Most buffer solutions contains a weak acid and its corresponding base, which combine reversibly with H ions

    • Weak acid and weak base to maintain good pH

Bio Chapter 3

  • The Molecule that Supports all Life

    • Water is the only substance that can exist in the natural environment in all 3 states

    • Water’s unique emergent properties make earth suitable for life

    • Structure of water allows it to interact with other molecules (be available for any large molecules’ broken and empty bonds)

    • Helps with the formation of different compounds/photosynthesis

    • It is an electron donor

  • Polar Covalent Bonds in Water Molecules Result in Hydrogen Bonding

    • Electrons (overall charge) are unevenly distributed (more attracted to the oxygen ion), making it a polar molecule with dipoles

    • Its polarity allows it to interact and form hydrogen bonds with other substances

    • Water molecules have a small charge that attracts it to others like itself

    • COHESION: Attraction to others like itself

    • ADHESION: Attraction to different substances than itself

  • 4 Emergent Properties of Water That Contribute to Life

    • Cohesive behavior

    • Ability to moderate temperature

    • Expansion upon freezing

    • Versatility as a solvent

  • The Cohesion of Water Molecules

    • Hydrogen bonds hold water molecules together, creating cohesion

    • Cohesion & adhesion allows the water in plants to move against gravity

    • Adhesion is in transpiration (as roots take up water to the leaves)

      • Capillary action = water going up a plant

      • Evaporation also pulls water upwards

    • Spheres take the least amount of energy (why water forms globs in space)

      • Tendency towards chaos/disorder + maintain energy (why it is a sphere)

    • Surface tension is the measure of how difficult it is to break the surface of a liquid

    • Water has an unusually high surface tension due to hydrogen bonding and cohesiveness

  • Moderation of Temperature by Water

    • water absorbs heat from warmer air and releases that heat into colder air (why regions beside lakes are cooler = because water is absorbing the heat)

    • Water can hold onto heat for long periods of time & release/absorb a large amount of heat with only a slight change in its own temperature (changing its state)

    • Temperature & Heat

      • Kinetic energy = energy in motion

      • A lot of energy is required to break water’s hydrogen bonds (cohesion) in large numbers

      • Thermal energy = kinetic energy’s association with the random motion of atoms and molecules

      • Heat = thermal energy being transferred from one body to another

        • Enzymes are picky with pH and temperature (water has a huge temperature range)

      • A calorie (cal) is the amount of energy required to raise 1g of water by 1 degree C

        • Also the amount of heat released when 1g of water cools

      • Joule is another unit of energy

  • ^^Water’s High Specific Heat ^^

    • The amount of heat that must be absorbed or lost for 1g of that substance to change by 1 degree C.

    • Specific heat of water is 1 cal/(g x C)

    • Rubbing alcohol has a lower high specific heat = evaporates quicker

    • Water resists changing its temperature because of its high specific heat

      • Hydrogen bonding breaks = heat is absorbed

      • Hydrogen bonds form = heat is released

      • High specific heat limits water’s temperature fluctuations to which it can still sustain life

  • Evaporative Cooling

    • Evaporation (vaporization) = transition from liquid to gas

    • The heat of evaporation = the heat required for 1g of a liquid to be converted into a gas

    • As the liquid evaporates, its remaining surface cools = evaporative cooling (the heat is released)

      • Helps stabilize temperatures in organisms and bodies of water

      • Ex. sweating (reduction of heat energy)

  • Floating of Ice on Liquid Water

    • Ice floats in water because the hydrogen bonds are more “ordered”, making ice less dense than water

    • Water is densest at 4 degrees (ex. bottom of the lake)

    • If ice sank to the bottom of water bodies, the entire water body would freeze (ice formed at the top would keep sinking down)

    • Global warming is affecting water bodies (heatsinks), making them unable to properly absorb heat

      • Objects around it are then heating up (ex. icebergs)

      • Creating challenges for animals that rely on ice

  • Water: The Solvent of Life

    • Aqueous solution = water is the solvent

    • Water is a versatile solvent due to its polarity

      • Ionic compounds can dissolve in water because its ions are surrounded by water molecules (ie. hydration shell/shield)

        • Ex. Glucose powder gets its molecules bent into rings when dissolved in water

    • Water can dissolve non-ionic polar molecules + very large polar molecules if they have ionic/polar regions

  • Hydrophilic and Hydrophobic Substances

    • Hydrophilic = affinity for water

    • Hydrophobic = no affinity for water

      • Ex. oils because they have non-polar bonds

      • Oils and other non-polar molecules are the main substances for cell membranes

    • Ex. Phospholipid Bilayer

      • Hydrophilic heads allow the cell to live in the water/in the body

      • The charge on the heads attract it together (cohesion)

      • Hydrophobic tails: water-soluble materials can not bypass the tails unless there is a carrier/receptor that brings it inside

      • If tails were on the outside, we would not survive (the cell would not be able to survive in water) and we would be oil-based organisms

      • If there is a slight charge, it is hydrophilic, if there is no charge, it is hydrophobic and non polar

  • Solute Concentrations in Aqueous Solutions

    • Molecular mass = sum of all atoms’ masses in a molecule

      • of entities = avogadro’s number

    • Molarity (M) = # of moles of solute/L of solution

    • Ex. Vinegar in salad dressing = helps the hydrophobic vegetables to break down/have a change in pH

  • Acidic and Basic Conditions Affect Living Organisms

    • A hydrogen atom in a hydrogen bond between 2 water molecules can shift between one and the other

    • Molecule that lost the proton = OH-

    • Molecule that gained a proton = H3O or H+

    • All enzymes are proteins, but not all proteins are enzymes

    • HCL is in stomach to lower pH (ex. of pepsin)

    • Amylase needs a neutral place to work (mouth)

    • Lower pH = more hydronium/hydrogen ions

    • High pH = more OH ions

    • When CO2 dissociates in water, it becomes carbonic acid or hydrogen carbonate

    • Changes in concentrations of H and OH can drastically affect the chemistry of a cell and affect the organism

    • Concentration of H and OH in pure water is the same

  • Acids and Bases

    • Acid = increases the H concentration of a solution

    • Bases = reduces the H concentration of a solution

    • Strong acids and bases dissociate completely in water

    • Weak acids and bases reversibly release and accept back H ions but can still shift the H and Oh away from neutrality

    • Most bio fluids have a pH of 6-8

      • Inside intestine = 8 (water is absorbed, lining is thinner, and enzymes need s pH of 8)

  • ==Buffers ==

    • The internal pH of most living cells is close to 7

    • Buffers are substances that limit changes in concentrations of H and OH in a solution

    • Most buffer solutions contains a weak acid and its corresponding base, which combine reversibly with H ions

    • Weak acid and weak base to maintain good pH

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