Bio Chapter 3
The Molecule that Supports all Life
Water is the only substance that can exist in the natural environment in all 3 states
Water’s unique emergent properties make earth suitable for life
Structure of water allows it to interact with other molecules (be available for any large molecules’ broken and empty bonds)
Helps with the formation of different compounds/photosynthesis
It is an electron donor
Polar Covalent Bonds in Water Molecules Result in Hydrogen Bonding
Electrons (overall charge) are unevenly distributed (more attracted to the oxygen ion), making it a polar molecule with dipoles
Its polarity allows it to interact and form hydrogen bonds with other substances
Water molecules have a small charge that attracts it to others like itself
COHESION: Attraction to others like itself
ADHESION: Attraction to different substances than itself
4 Emergent Properties of Water That Contribute to Life
Cohesive behavior
Ability to moderate temperature
Expansion upon freezing
Versatility as a solvent
The Cohesion of Water Molecules
Hydrogen bonds hold water molecules together, creating cohesion
Cohesion & adhesion allows the water in plants to move against gravity
Adhesion is in transpiration (as roots take up water to the leaves)
Capillary action = water going up a plant
Evaporation also pulls water upwards
Spheres take the least amount of energy (why water forms globs in space)
Tendency towards chaos/disorder + maintain energy (why it is a sphere)
Surface tension is the measure of how difficult it is to break the surface of a liquid
Water has an unusually high surface tension due to hydrogen bonding and cohesiveness
Moderation of Temperature by Water
water absorbs heat from warmer air and releases that heat into colder air (why regions beside lakes are cooler = because water is absorbing the heat)
Water can hold onto heat for long periods of time & release/absorb a large amount of heat with only a slight change in its own temperature (changing its state)
Temperature & Heat
Kinetic energy = energy in motion
A lot of energy is required to break water’s hydrogen bonds (cohesion) in large numbers
Thermal energy = kinetic energy’s association with the random motion of atoms and molecules
Heat = thermal energy being transferred from one body to another
Enzymes are picky with pH and temperature (water has a huge temperature range)
A calorie (cal) is the amount of energy required to raise 1g of water by 1 degree C
Also the amount of heat released when 1g of water cools
Joule is another unit of energy
^^Water’s High Specific Heat ^^
The amount of heat that must be absorbed or lost for 1g of that substance to change by 1 degree C.
Specific heat of water is 1 cal/(g x C)
Rubbing alcohol has a lower high specific heat = evaporates quicker
Water resists changing its temperature because of its high specific heat
Hydrogen bonding breaks = heat is absorbed
Hydrogen bonds form = heat is released
High specific heat limits water’s temperature fluctuations to which it can still sustain life
Evaporative Cooling
Evaporation (vaporization) = transition from liquid to gas
The heat of evaporation = the heat required for 1g of a liquid to be converted into a gas
As the liquid evaporates, its remaining surface cools = evaporative cooling (the heat is released)
Helps stabilize temperatures in organisms and bodies of water
Ex. sweating (reduction of heat energy)
Floating of Ice on Liquid Water
Ice floats in water because the hydrogen bonds are more “ordered”, making ice less dense than water
Water is densest at 4 degrees (ex. bottom of the lake)
If ice sank to the bottom of water bodies, the entire water body would freeze (ice formed at the top would keep sinking down)
Global warming is affecting water bodies (heatsinks), making them unable to properly absorb heat
Objects around it are then heating up (ex. icebergs)
Creating challenges for animals that rely on ice
Water: The Solvent of Life
Aqueous solution = water is the solvent
Water is a versatile solvent due to its polarity
Ionic compounds can dissolve in water because its ions are surrounded by water molecules (ie. hydration shell/shield)
Ex. Glucose powder gets its molecules bent into rings when dissolved in water
Water can dissolve non-ionic polar molecules + very large polar molecules if they have ionic/polar regions
Hydrophilic and Hydrophobic Substances
Hydrophilic = affinity for water
Hydrophobic = no affinity for water
Ex. oils because they have non-polar bonds
Oils and other non-polar molecules are the main substances for cell membranes
Ex. Phospholipid Bilayer
Hydrophilic heads allow the cell to live in the water/in the body
The charge on the heads attract it together (cohesion)
Hydrophobic tails: water-soluble materials can not bypass the tails unless there is a carrier/receptor that brings it inside
If tails were on the outside, we would not survive (the cell would not be able to survive in water) and we would be oil-based organisms
If there is a slight charge, it is hydrophilic, if there is no charge, it is hydrophobic and non polar
Solute Concentrations in Aqueous Solutions
Molecular mass = sum of all atoms’ masses in a molecule
Molarity (M) = # of moles of solute/L of solution
Ex. Vinegar in salad dressing = helps the hydrophobic vegetables to break down/have a change in pH
Acidic and Basic Conditions Affect Living Organisms
A hydrogen atom in a hydrogen bond between 2 water molecules can shift between one and the other
Molecule that lost the proton = OH-
Molecule that gained a proton = H3O or H+
All enzymes are proteins, but not all proteins are enzymes
HCL is in stomach to lower pH (ex. of pepsin)
Amylase needs a neutral place to work (mouth)
Lower pH = more hydronium/hydrogen ions
High pH = more OH ions
When CO2 dissociates in water, it becomes carbonic acid or hydrogen carbonate
Changes in concentrations of H and OH can drastically affect the chemistry of a cell and affect the organism
Concentration of H and OH in pure water is the same
Acids and Bases
Acid = increases the H concentration of a solution
Bases = reduces the H concentration of a solution
Strong acids and bases dissociate completely in water
Weak acids and bases reversibly release and accept back H ions but can still shift the H and Oh away from neutrality
Most bio fluids have a pH of 6-8
Inside intestine = 8 (water is absorbed, lining is thinner, and enzymes need s pH of 8)
==Buffers ==
The internal pH of most living cells is close to 7
Buffers are substances that limit changes in concentrations of H and OH in a solution
Most buffer solutions contains a weak acid and its corresponding base, which combine reversibly with H ions
Weak acid and weak base to maintain good pH
The Molecule that Supports all Life
Water is the only substance that can exist in the natural environment in all 3 states
Water’s unique emergent properties make earth suitable for life
Structure of water allows it to interact with other molecules (be available for any large molecules’ broken and empty bonds)
Helps with the formation of different compounds/photosynthesis
It is an electron donor
Polar Covalent Bonds in Water Molecules Result in Hydrogen Bonding
Electrons (overall charge) are unevenly distributed (more attracted to the oxygen ion), making it a polar molecule with dipoles
Its polarity allows it to interact and form hydrogen bonds with other substances
Water molecules have a small charge that attracts it to others like itself
COHESION: Attraction to others like itself
ADHESION: Attraction to different substances than itself
4 Emergent Properties of Water That Contribute to Life
Cohesive behavior
Ability to moderate temperature
Expansion upon freezing
Versatility as a solvent
The Cohesion of Water Molecules
Hydrogen bonds hold water molecules together, creating cohesion
Cohesion & adhesion allows the water in plants to move against gravity
Adhesion is in transpiration (as roots take up water to the leaves)
Capillary action = water going up a plant
Evaporation also pulls water upwards
Spheres take the least amount of energy (why water forms globs in space)
Tendency towards chaos/disorder + maintain energy (why it is a sphere)
Surface tension is the measure of how difficult it is to break the surface of a liquid
Water has an unusually high surface tension due to hydrogen bonding and cohesiveness
Moderation of Temperature by Water
water absorbs heat from warmer air and releases that heat into colder air (why regions beside lakes are cooler = because water is absorbing the heat)
Water can hold onto heat for long periods of time & release/absorb a large amount of heat with only a slight change in its own temperature (changing its state)
Temperature & Heat
Kinetic energy = energy in motion
A lot of energy is required to break water’s hydrogen bonds (cohesion) in large numbers
Thermal energy = kinetic energy’s association with the random motion of atoms and molecules
Heat = thermal energy being transferred from one body to another
Enzymes are picky with pH and temperature (water has a huge temperature range)
A calorie (cal) is the amount of energy required to raise 1g of water by 1 degree C
Also the amount of heat released when 1g of water cools
Joule is another unit of energy
^^Water’s High Specific Heat ^^
The amount of heat that must be absorbed or lost for 1g of that substance to change by 1 degree C.
Specific heat of water is 1 cal/(g x C)
Rubbing alcohol has a lower high specific heat = evaporates quicker
Water resists changing its temperature because of its high specific heat
Hydrogen bonding breaks = heat is absorbed
Hydrogen bonds form = heat is released
High specific heat limits water’s temperature fluctuations to which it can still sustain life
Evaporative Cooling
Evaporation (vaporization) = transition from liquid to gas
The heat of evaporation = the heat required for 1g of a liquid to be converted into a gas
As the liquid evaporates, its remaining surface cools = evaporative cooling (the heat is released)
Helps stabilize temperatures in organisms and bodies of water
Ex. sweating (reduction of heat energy)
Floating of Ice on Liquid Water
Ice floats in water because the hydrogen bonds are more “ordered”, making ice less dense than water
Water is densest at 4 degrees (ex. bottom of the lake)
If ice sank to the bottom of water bodies, the entire water body would freeze (ice formed at the top would keep sinking down)
Global warming is affecting water bodies (heatsinks), making them unable to properly absorb heat
Objects around it are then heating up (ex. icebergs)
Creating challenges for animals that rely on ice
Water: The Solvent of Life
Aqueous solution = water is the solvent
Water is a versatile solvent due to its polarity
Ionic compounds can dissolve in water because its ions are surrounded by water molecules (ie. hydration shell/shield)
Ex. Glucose powder gets its molecules bent into rings when dissolved in water
Water can dissolve non-ionic polar molecules + very large polar molecules if they have ionic/polar regions
Hydrophilic and Hydrophobic Substances
Hydrophilic = affinity for water
Hydrophobic = no affinity for water
Ex. oils because they have non-polar bonds
Oils and other non-polar molecules are the main substances for cell membranes
Ex. Phospholipid Bilayer
Hydrophilic heads allow the cell to live in the water/in the body
The charge on the heads attract it together (cohesion)
Hydrophobic tails: water-soluble materials can not bypass the tails unless there is a carrier/receptor that brings it inside
If tails were on the outside, we would not survive (the cell would not be able to survive in water) and we would be oil-based organisms
If there is a slight charge, it is hydrophilic, if there is no charge, it is hydrophobic and non polar
Solute Concentrations in Aqueous Solutions
Molecular mass = sum of all atoms’ masses in a molecule
Molarity (M) = # of moles of solute/L of solution
Ex. Vinegar in salad dressing = helps the hydrophobic vegetables to break down/have a change in pH
Acidic and Basic Conditions Affect Living Organisms
A hydrogen atom in a hydrogen bond between 2 water molecules can shift between one and the other
Molecule that lost the proton = OH-
Molecule that gained a proton = H3O or H+
All enzymes are proteins, but not all proteins are enzymes
HCL is in stomach to lower pH (ex. of pepsin)
Amylase needs a neutral place to work (mouth)
Lower pH = more hydronium/hydrogen ions
High pH = more OH ions
When CO2 dissociates in water, it becomes carbonic acid or hydrogen carbonate
Changes in concentrations of H and OH can drastically affect the chemistry of a cell and affect the organism
Concentration of H and OH in pure water is the same
Acids and Bases
Acid = increases the H concentration of a solution
Bases = reduces the H concentration of a solution
Strong acids and bases dissociate completely in water
Weak acids and bases reversibly release and accept back H ions but can still shift the H and Oh away from neutrality
Most bio fluids have a pH of 6-8
Inside intestine = 8 (water is absorbed, lining is thinner, and enzymes need s pH of 8)
==Buffers ==
The internal pH of most living cells is close to 7
Buffers are substances that limit changes in concentrations of H and OH in a solution
Most buffer solutions contains a weak acid and its corresponding base, which combine reversibly with H ions
Weak acid and weak base to maintain good pH