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exam 3 cbg terms

The cell cycle – outline

 

🧠 MIND MAP STRUCTURE

1. Levels of Biological Organization

  • Atom → Macromolecule → Organelle → Cell → Organism

  • Cells → 2 cells (cell division)


2. DNA, Genes & Chromosomes

  • DNA Replication: Occurs in S phase

  • Transcription / Central Dogma happens anytime

  • Enough DNA in one human to stretch to the moon

  • Genes are coding regions in DNA

  • Chromatin = DNA + histones

  • Chromosomes → Sister Chromatids → Chromatin

  • G1 = Linear Chromosome

  • S = X-shaped Chromosome (2 sister chromatids)

  • G2 = Chromosome still in X-shape

  • 22 pairs autosomes + 1 pair sex chromosomes

  • Y = male / No Y = female

  • Chromosome number varies by species but is consistent within a species


3. Cell Cycle

  • Phases:

    cell4e-fig-16-01-0

       

    http://www.pha.jhu.edu/~ghzheng/old/webct/note7_1.files/Image1.jpg

       

    Image result for go phase of cell cycle
    • Interphase (G1 – organelle growth, S – DNA synthesis, G2 – centrosomes form, G0 – cell leaves cycle and stops)

    • Mitosis (Prophase, Prometaphase, Metaphase, Anaphase, Telophase)

    • Cytokinesis

  • Mitosis Key Events:

    • Prophase: spindle forms, nuclear envelope disappears

    • Prometaphase: kinetochores form at centromeres

    • Metaphase: chromosomes align at metaphase plate

    • Anaphase: sister chromatids pulled apart

    • Telophase: nuclear envelope reforms, chromosomes decondense

  • Cytokinesis:

    • Animal: cleavage furrow (actin)

    • Plant: cell plate (vesicles)

  • Centrosomes: organize microtubules, contain centrioles

    A diagram of a cell

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  • Binary Fission:

    • Prokaryotic cell division (origin replicates, moves to poles, cell divides)

  • Eukaryote: mitosis

  • Prokaryote: binary fission

  • Some unicellular eukaryotes divide in intermediate ways

  • Mitosis vs Meiosis: mitosis = diploid (1 division), meiosis = haploid (2 divisions)


4. Cell Cycle Regulation

  • Checkpoints:

    • G1: environment favorable, DNA damage

    • G2: DNA replication complete, damage repair

    • M: chromosomes aligned properly

  • Regulators:

    • Cyclins: cycle in abundance (e.g. Cyclin B accumulates in S & G2, degraded in anaphase)

    • CDKs: always present, need cyclin to activate

    • MPF = Cyclin B + CDK1 (phosphorylates proteins to move from G2 → M)


5. Cell Aging & Immortality

  • Telomeres: repeat sequences on chromosome ends that shorten with division

  • Telomerase: enzyme that restores telomeres (germ, stem, cancer cells)

  • Henrietta Lacks / HeLa Cells: immortalized line used in research

  • Cell Senescence: cell stops dividing due to telomere shortening


6. Cancer vs. Normal Cells

  • Normal:

    • Growth factors, density-dependent inhibition, anchorage dependence

  • Cancer:

    • Neoplasm (neo = new, plasm = growth): a new growth of cells that is abnormal

    • Malignant = cancer: when cells invade adjacent tissue they are considered cancer

    • Benign = non-cancerous: tumor cells do not invade, but can kill if it’s not possible to remove tumor due to location (brain)


7. Meiosis      

  • Purpose: produces haploid gametes

  • Phases:

    • Prophase I: crossing over (chiasmata), spindle forms, envelope disappears

    • Metaphase I: homologous chromosomes line up

    • Anaphase I: homologous chromosomes pulled apart

    • Telophase I / Cytokinesis I: divide

    • Prophase II – Telophase II: like mitosis but with non-identical chromatids

  • Genetic Variation:

    • Crossing over (Prophase I)

    • Independent Assortment

    • Random Fertilization


8. Key Vocabulary / Concepts

  • Sister chromatids = identical halves of a duplicated chromosome

  • Homologous chromosomes = same genes, different alleles

  • Non-Homologous chromosomes: different traits

  • Locus = gene location

  • Diploid = full set of chromosomes

  • Haploid = half set of chromosomes

  • Karyotype = chromosomal makeup

  • Allele = version of a gene


9. Sex Chromosomes & Disorders  

  • X = 1,100 genes

  • Y = 450 genes

  • Disorders:

    • Trisomy 21: Chromosome 21 fails to properly separate (Down Syndrome)

    • Trisomy 13 (Patau Syndrome)

    • Turner Syndrome (X): Female only receives 1 X; born with 45 chromosomes

    • Klinefelter Syndrome (XXY): reduced fertility

    • Jacob Syndrome (XYY): increased testosterone, tall, lean

  • (Aneuploidy: abnormal number of chromosomes)


10. Egg Meiosis / Arrests

  • Egg arrests in Prophase I after birth

  • After puberty → completes Meiosis I, arrests at Metaphase II

  • Fertilization → completes Meiosis II


 

 

📚 FLASHCARD STUDY LIST

Use flashcards for terms + definitions:

  • Atom, Macromolecule, Organelle, Cell, Organism

  • Chromatin, Chromatid, Chromosome

  • Gene, Allele, Locus, Karyotype

  • Homologous vs. Non-homologous Chromosomes

  • Diploid vs. Haploid

  • G1, S, G2, G0

  • Prophase, Prometaphase, Metaphase, Anaphase, Telophase

  • Cytokinesis

  • Centrosome, Centriole, Kinetochore, Centromere

  • Binary Fission

  • Cyclin, CDK, MPF

  • Telomere, Telomerase, Senescence

  • Crossing Over, Independent Assortment, Random Fertilization

  • Nondisjunction, Aneuploidy

  • Trisomy 21, 13, Turner, Klinefelter, Jacob Syndromes


 

 

🎥 DIAGRAM / VIDEO STUDY LIST

Use visual aids for these:

-        The entire Cell Cycle and Mitosis process

-        Meiosis I & II step-by-step with crossing over

-        Binary Fission vs. Mitosis comparison

-        MPF activation and Cyclin/CDK cycle

-        Telomerase function & telomere shortening

-        Chromosome alignment in meiosis and mitosis

-        Genetic disorders and their karyotypes

-        Egg Arrests: visual of stages and when they pause

-        Cell Checkpoints and Regulation mechanisms

📌 Video links you saved:

 

 

 

 

 

 

 

 

Exam 3:

Mendel and the gene idea

🧠 MIND MAP STRUCTURE

🧬 1. Key Genetic Concepts

  • Genotype: genetic makeup

  • Phenotype: physical makeup

  • Allele: different versions of a gene (e.g., brown vs green eye color)

  • Heredity: transmission of traits from one generation to the next

  • Trait: a variant of a character

  • Character: a heritable feature that varies among individuals

  • Genetics: study of heredity


🧪 2. Historical Genetic Theories

  • Lamarck Inheritance: Acquired traits can be inherited (disproven by Mendel)

    • Example: Long necks in giraffes passed down if mother stretched her neck (proven false)

  • Gregor Mendel: Father of modern genetics

    • Pea plant experiments

    • Traits are inherited from one generation to the next

    • Disproved Lamarck

    • Discovered dominant vs recessive traits

    • Organisms inherit two gene copies (1 from each parent)


🌱 3. Mendelian Inheritance

  • Key Terms:

    • Homozygous dominant (BB)

    • Heterozygous (Bb)

    • Homozygous recessive (bb)

    • True breeding: Homozygous for alleles

    • P, F1, F2 generations

  • Dominance: Dominant alleles mask recessive

  • Punnett Squares used to determine inheritance

Example:

B= brown eyes

b= blue eyes

BB = homozygous dominant

Bb= heterozygous

bb= homozygous recessive


4. Mendel's Laws

  • Law of Segregation: Alleles separate during meiosis

    • Lowercase = recessive

      http://ib.berkeley.edu/courses/ib162/Week2a_files/image006.jpg
    • Uppercase = dominant

  • Law of Independent Assortment: Inheritance of one trait doesn't affect another

    A diagram of a dna sequence

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🧬 5. Dominance Patterns

  • Complete Dominance Disorders:

    • Recessive: Sickle Cell, Cystic Fibrosis, Tay-Sachs

    • Dominant: Huntington’s, Autosomal Polycystic Kidney Disease, Osteopetrosis


6. Exceptions to Mendelian Genetics

  • Incomplete Dominance: Intermediate traits (e.g., wavy hair)

  • Codominance: Both traits expressed (e.g., calico cat, blood types A and B)

  • Epistasis: One gene affects another's expression (e.g., pigment in labs)

  • Polygenic Inheritance: Multiple genes affect a trait (e.g., skin color)

  • Epigenetic Inheritance: Environment affects DNA gene expression (e.g., identical twins differ)

Þ   Codominance in humans:                   

-       We have three alleles for blood type A, B and O blood.

-       A and B are codominant, and O is recessive to both.


👩‍🔬 7. Sex-Linked Traits

  • Men inherit X-linked traits more (no extra X to mask recessive traits)

  • Examples:

    • Duchenne Muscular Dystrophy: Muscle breakdown due to DMD gene mutation

    • Hemophilia: Blood doesn’t clot properly

    • Color Blindness

  • Genotypes:

o   H = no hemophilia

o   H = hemophilia

o   XHY = make without hemophilia

o   XhY = male with hemophilia

o   XHXH = female without hemophilia

o   XHXh = female without but is a carrier


🧬 8. Chromosomal Basis of Inheritance

  • Chromosome Theory: Genes have specific locations (loci) on chromosomes and undergo segregation and independent assortment

  • Genes on Chromosomes: Hundreds to thousands per chromosome

  • Model Organisms: Organism used to study biological processes (e.g., fruit flies)

  • Thomas Morgan: First evidence linking genes to chromosomes

    • Fruit fly red/white eye experiment → 3:1 ratio in F2 generation


📊 9. Genetic Mapping Tools

  • Pedigrees: Trace family lineage and inheritance

  • Linked Genes: Exception to Mendel’s Law of Indep. Assort.; Genes that are linked and are on the same chromosome will be inherited together.

  • Genetic Recombination (Crossing Over): Results in new phenotypes; Explains why linked genes sometimes separate


🧬 10. Chromosome Alterations

  • Deletion: Loss of a chromosome fragment

    • Prader-Willi (obesity, cognitive delay)

    • Angelman (ataxia, seizures, laughter)

  • Duplication: Extra gene copies

    • Charcot-Marie-Tooth (affects neurons)

  • Inversion: Chromosome segment flipped

    • Walker-Warburg syndrome (muscle and brain development issues)

  • Translocation: Part of a chromosome moves to another

    • Emmanuel Syndrome (growth and motor delays)

                          


🔋 11. Organelle Genes

  • Non-nuclear DNA: Found in mitochondria and chloroplasts

  • Mitochondrial DNA (mtDNA):

    • Affects high-energy organs (muscles, brain)

    • Conditions: Mitochondrial Myopathy, Leber’s Hereditary Optic Neuropathy


🧫 12. Membrane Structure and Function

  • Plasma Membrane Functions:

    1. Maintains cell shape and isolation from environment

    2. Controls cellular interactions

  • Structure:

  • Lipids, Proteins, Carbohydrates (5–10% for cell communication)

  • Protein Types:

  • Peripheral: Associated via other proteins

  • Integral: Embedded in membrane

  • Protein Functions:

  • Transport

  • Enzymatic activity

  • Cell-to-cell recognition

  • Intercellular joining

  • Membrane Protein Mobility: Move laterally, not vertically

  • Membrane Fluidity Factors:

    1. Unsaturated fatty acids (kinked tails = more fluid)

    2. Cholesterol

  • Unsaturated fatty acids form kinks

    1. Have double bonds that form bends causing tail to kink.

      • Phospholipids form kinks in tail that allows it to move more / more fluid, and prevents it from tightly packing.

    2. Saturated fatty acids don’t have kinks so the phospholipids are tightly packed together making it less fluid / not able to move much.

  • Transport Types:

  • (Note: Incomplete in your notes—can add more here if you have them!)


 

 

Study Strategies (Flashcards vs. Visuals)

📇 Flashcard Material (Terms & Definitions)

Use flashcards for:

  • All vocabulary/definitions under Key Genetic Concepts

  • Dominant vs. Recessive Disorders

  • Mendelian terms (e.g., Homozygous, Heterozygous, P/F1/F2 Generations)

  • Types of dominance (Incomplete, Codominance, etc.)

  • All chromosome alteration types & their conditions (Deletion, Duplication, etc.)

  • Organelle Genes & mtDNA conditions

  • All sex-linked terms and genotypes

  • Membrane protein types and their functions

  • All laws (Segregation, Independent Assortment)


🧠 Visual Study Tools (Diagrams, Images, and Videos)

Use visuals/diagrams for:

  • Punnett squares (with genotype/phenotype outcomes)

  • Inheritance patterns (esp. sex-linked traits)

  • Linked genes and genetic recombination (crossing over)

  • All chromosome alteration types

  • Pedigrees and model organism experiments (fruit fly example)

  • Epistasis, Incomplete dominance, Codominance examples

  • Membrane structure and fluidity (lipid bilayer + protein movement)

  • Mitochondrial DNA inheritance and impact