Chapter 2: The Chemistry of Life

2.1 The Nature of Matter

Atoms

  • Atoms are the basic unit of matter and are made up of protons, neutrons, and electrons
  • Protons and neutrons have the same mass but different charges   * Protons have a positive charge (+)   * Neutrons carry no charge at all
  • An electron is a negatively charged particle (-)
  • The nucleus is the center of the atom

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Elements and Isotopes

  • An element is a pure substance that consists entirely of one type of atom   * Each element has a one- or two-letter symbol (C for carbon or Na for sodium)   * An element’s atomic number is the number of protons in the atom
  • Atoms of the same element that have different numbers of neutrons are isotopes   * Protons + neutrons = mass number   * Isotopes are named using their mass number   * Some isotopes are radioactive

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Chemical Compounds

  • A compound is a substance formed by the chemical combination of two or more elements in definite proportions   * The number of each element in a compound can be shown using chemical formulas     * Ex: Since water has 2 atoms of hydrogen and 1 atom of oxygen, the chemical formula for water is H2O

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Chemical Bonds

  • @@The 2 main chemical bonds are ionic and covalent bonds@@   * An ionic bond is formed when one or more electrons are transferred from one atom to another     * An atom that loses electrons becomes positively charged, while an atom that gains electrons has a negative charge     * Oppositely charged ions attract one another   * A covalent bond is a bond between atoms in which the electrons are shared and is formed when the electrons travel around the nuclei of both atoms     * Single covalent bond: atoms sharing 2 electrons     * Double bond: atoms sharing 4 electrons     * Triple bond: atoms sharing 6 electrons   * @@Covalent bonds form structures called molecules@@     * The molecule is the smallest unit of most compounds that displays all properties of that compound     * In a water molecule, each hydrogen atom shares 2 electrons with the oxygen atom. So, each hydrogen atom is joined to the oxygen atom by a covalent bond.

 

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2.2 Properties of Water

The Water Molecule

  • @@Water is a polar molecule@@   * A molecule in which the charges are unevenly spread out is said to be “polar
  • The pull between a partially positive hydrogen atom on one molecule and a partially negative oxygen atom on another is known as a hydrogen bond   * @@Hydrogen bonds give water special properties such as cohesion, adhesion, and a high heat capacity@@     * Cohesion: the attraction between molecules of the same substance     * Adhesion: the force of attraction between different kinds of molecules     * Heat capacity: the amount of energy needed to increase a substance’s temperature

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Solutions and Suspensions

  • Water is often part of a mixture   * A mixture is made up of elements or compounds that are combined but not bonded together
  • Two kinds of mixtures made with water are solutions and suspensions   * A solution is a type of mixture in which all the components are evenly distributed. Contains one or more solutes in a solvent     * A solute is what is dissolved     * A solvent is what does the dissolving   * A suspension is a mixture of water and non-dissolved material

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Acids, Bases, and pH

  • The pH scale is used to show the concentration of H+ ions in a solution   * The scale ranges from 0 to 14     * A solution with a pH of 7 is considered neutral     * Solutions with a pH below 7 are acidic     * Solutions with a pH above 7 are basic
  • An acid is a compound that releases hydrogen ions in a solution; has a pH of less than 7
  • A base is a compound that releases hydroxide ions in a solution; has a pH of more than 7
  • A buffer is a compound that prevents sharp, sudden changes in pH

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2.3 Carbon Compounds

The Chemistry of Carbon

  • Carbon atoms have 4 electrons available for bonding, including @@hydrogen, oxygen, phosphorus, sulfur, and nitrogen@@ to form life’s molecules
  • Carbon atoms can bond with one another   * Carbon-carbon bonds can be single, double, or triple and can even close up on themselves to form rings

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Macromolecules

  • Macromolecules are made from thousands or even hundreds of thousands of smaller molecules called monomers   * Monomers join to form polymers
  • The four major groups of macromolecules are:   * Carbohydrates: compounds made up of carbon, hydrogen, and oxygen atoms; a type of nutrient that is the main source of energy for the body     * Simple sugars such as monosaccharides and disaccharides     * Complex carbohydrates are the large macromolecules formed when simple sugars join together   * Lipids: macromolecules that generally do not dissolve in water and are made mostly of carbon and hydrogen atoms; used to store energy and are parts of membranes and waterproof coverings     * Common lipids include fats, oils, and waxes     * Saturated and unsaturated   * Nucleic acids: macromolecules containing hydrogen, oxygen, nitrogen, carbon, and phosphorus; function to store and transmit genetic information     * Deoxyribonucleic acid (DNA) contains the sugar deoxyribose     * Ribonucleic acid (RNA) contains the sugar ribose   * Proteins: macromolecules that contain carbon, hydrogen, oxygen, and nitrogen; needed by the body for growth and repair     * Amino acids are compounds with an amino group on one end and a carboxyl group on the other end

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2.4 Chemical Reactions and Enzymes

Chemical Reactions

  • A chemical reaction is a process that changes or transforms one set of chemicals into another set of chemicals   * Reactants are the elements or compounds that go into a chemical reaction   * Products are the elements or compounds that come out of a chemical reaction

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Energy in Reactions

  • Chemical reactions that give off energy often happen on their own, while chemical reactions that take in energy will not happen without a source of energy   * Activation energy is the energy that is needed to get a reaction started

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Enzymes

  • A catalyst is a substance that speeds up the rate of a chemical reaction by lowering a reaction’s energy rate   * Enzymes are proteins that act as catalysts in living things     * The reactants of enzyme-catalyzed reactions are known as substrates     * The substrates bind to a site called the active site     * Temperature, pH, and other molecules can affect how enzymes work

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