Botany Notes- Photosynthesis.docx
Photosynthesis:
The process driving ALL other ecological processes
CO2+ H2O + sunlight = O2 + sugar
This includes all green plant parts, esp. upper if surfaces
Oxygen waste products bubble out of aquatic plants
There are typically numerous chloroplasts per cell
Leaves have denser edges of the leaves for photosynthesis
More stomata for photosynthetic machinery
Every time a stomate is open- it pulls in food and the plant will lose water vapor by doing that. If it were on the upper surface, it would lose more water vapor being pointed towards the sun.
Chloroplasts
Main function is the generate food/energy and send it out to the plant
Contain dense stacked membrane systems
Known as grana
There is stroma inside of the thylakoids
Their dark reactions happen in the cytoplasm in the cyanobacteria cell
More surface area allows for more function to happen (photosynthesis)
Chloroplasts can temporarily store sugar as needed
Chl a: Absorbs red and purple (in the visible light spectrum)
Chl b: blue-purple and small of orange light
Carotenoids
accessory pigments that capture wavelengths that chlorophyll doesn’t
Present in cyanotes
carrots- red/yellow/orange
absorbs blue/green
In the absence of Chl b: they have Phycobilins instead that pic up wavelengths that others cannot
Pick up what Chl a cannot
Accessory pigments:
Capture wavelengths that chlorophyll doesn’t
Protect photosystems from UV damage
Plastid types:
Etioplasts
Chromoplast
Chloroplast
Leucoplasts
Amyloplasts
Elaioplats
Protienoplats
Anthocyanins- purple
Common protectors in tundra/high elevations
Chlorophyll – EXPENSIVE
A: magnesium is limited, especially in highly eroded soils
B: has CHO- that is the only different from chl a and b
Typical Photosynthesis
C3:
Mesophyll: photosynthesis leaf tissue
CO2 enters leaf air spaces---🡪 then diffuses into chloroplasts
a chloroplast is not unlike a cyanobacteria
Light reactions: membranes of thylakoids
sunlight is used to rip protons from water with Oxygen as the by product
split water with photons to produce energy
producing ATP (main function of the mitochondria)
input: NADPH+
waste: O2
Hydrogen gets ripped off to be donated to be given to the NADPH+
dark reactions: in stroma
Rubisco enzyme fixes CO2 into a solid form; and ATP and NADPH convert solid C to food/sugar
all happens without sunlight
Known as the Calvin cycle- where gaseous CO2 is being used to make sugar
This form of Photosynthesis is called C3 because dark reactions have a 3-carbon sugar product
Anything green is photosynthetic and also many things not green also do
Because the pigments present mask the green color underneath
Stomata generally close at night- not all are aways open (not even close)
Many systems in AR are competing for sunlight because it is a limiting factor
Morn graph: must cross the threshold for photosynthesis to be profitable
In the shade, more surface area is needed to collect sunlight
Problem with C3: Rubisco is not specific
Rubisco sometimes is not perfect; it sometimes performs photorespiration and consumes O2 while releasing CO2 (opposite of what is needed) meaning no ATP or sugars is produced
This mistake is why there are not C3 plants in the desert.
A general photosystem:
Embedded in the thylakoid membranes
Proteins complexes that harvest sunlight
Where pigments are found
Photosystem II
Water is split into O2 gas waste and 2H
That is used to generate ATP (in ATP Synthase complex)
The water is split by light energy
Light + H2O 🡪 ATP
Photosystem I
Dependent on Photosystem II
Uses its energy (ATP) produced to fuel its process – NADPH
Photosystems I and II occur in the thylakoid membrane: light reactions
Send ions from areas of high to low concentrations
Electrochemical potential gradient- mores the process
Eukaryotes
Green algae
Monophyletic group (clade)
Any natural group; all descendants from a node/common ancestor
Paraphyletic group:
Not including all descendants from common ancestor/node
Green algae= paraphyletic
Because it does not include embryotic descendants
Ceae= family, anything else= genus
Synapomorphies of Plantae
Chlorophyll a & b in chloroplasts
Starch is storage product of photosynthesis, stored in chloroplast
2-7 thylakoid membranes stacked in grana
Loss of phycobilin/phycobilisomes
Micromonas- green algae
Eukaryote, single celled with a flagella
Pyrenoid present: helps concentrate CO2
Free living and free swimming
Ulvophyceae- green algae- variation in morphology
Unicellular, colonial
Filamentous
parenchymatous (3D colonies; cell division in 3 planes)
coenocytic (multinucleate: mitosis takes place without cytokinesis)
3 types of gametes among the green algae
Isogamy
Anisogamy
Oogamy- only one swims
Zoospores-
can swim and establish new algae- asexual and divide using mitosis
Algae are mostly haploid most of the time
Humans are diploid
Haploid- ln
Diploid 2n
Ulva- kelp/seaweed
Densely packed with chloroplasts
Known as products such as “sea lettuce”
Multicellular
Coenocytic=multinucleate
Nucleus divides without cell wall
Cladophora
Valonia- bubble algae or sailor’s eyeball
Acetabularia
Considered one cell (largest cells on the planet)
Entire organism only has 1 nucleus
Life cycles-
Diplontic
Multicellular diploid stage
Ex: animals
Haplontic
Most of the green algae
Unicellular zygote
Meiosis takes place in zygote
Alternation of generations- unique to plants
Multicellular sporophyte and gametophyte (haploid and diploid stage)
Meiosis takes place in sporophyte
Myosis in zygote🡪 spore
Chlorophyceae- phycoplast
Phycoplasts:
Microtubules
Ensuring daughter
Nuclei remain separated
Only in the Chlorophyceae in the Phylum
Phragmoplasts:
Extra set of Microtubules serving as scaffolding for cell plate
Cyanobacteria lack flagella
Chlamydomonas have flagella
Green algae Plant Cell
Pyrenoid
Helps accumulate/concentrate CO2
CO2 is LESS accessible underwater then in air
Have vacuole
Cell Walls
Single celled
How Chlamydomonas reproduce:
They become the gametes- monogamy
Find compatible gamete
Lock flagella- adhesion and fusion
Projects cellular contents into the other
Now have 2 contents and is a zygote (the diploid phase)
The zygote can stay dormant if necessary until environment is suitable
Miosis always results in 4 new cells, zoospores are the asexual version or can create gametes
These games then fuse and create zygotes – this is Haplontic (defined above)
Volvox- more green algae types
Have flagella (2 per cell)
Eyespot- can sense light and move toward it
Autocolony- daughter colony
Formed asexually- clones
Flagella are formed on the inside of the autocology- how do they get oriented to the outside of the colony?
It self inverts! That is how they get to the outside – they flip inside-out!!
Hydrodictyon- multiple nuclei
Multinucleate cells
Oedogonium- filamentous
Leaves behind scars from cell division (annular scars)
Life Cycle
Photosynthesis:
The process driving ALL other ecological processes
CO2+ H2O + sunlight = O2 + sugar
This includes all green plant parts, esp. upper if surfaces
Oxygen waste products bubble out of aquatic plants
There are typically numerous chloroplasts per cell
Leaves have denser edges of the leaves for photosynthesis
More stomata for photosynthetic machinery
Every time a stomate is open- it pulls in food and the plant will lose water vapor by doing that. If it were on the upper surface, it would lose more water vapor being pointed towards the sun.
Chloroplasts
Main function is the generate food/energy and send it out to the plant
Contain dense stacked membrane systems
Known as grana
There is stroma inside of the thylakoids
Their dark reactions happen in the cytoplasm in the cyanobacteria cell
More surface area allows for more function to happen (photosynthesis)
Chloroplasts can temporarily store sugar as needed
Chl a: Absorbs red and purple (in the visible light spectrum)
Chl b: blue-purple and small of orange light
Carotenoids
accessory pigments that capture wavelengths that chlorophyll doesn’t
Present in cyanotes
carrots- red/yellow/orange
absorbs blue/green
In the absence of Chl b: they have Phycobilins instead that pic up wavelengths that others cannot
Pick up what Chl a cannot
Accessory pigments:
Capture wavelengths that chlorophyll doesn’t
Protect photosystems from UV damage
Plastid types:
Etioplasts
Chromoplast
Chloroplast
Leucoplasts
Amyloplasts
Elaioplats
Protienoplats
Anthocyanins- purple
Common protectors in tundra/high elevations
Chlorophyll – EXPENSIVE
A: magnesium is limited, especially in highly eroded soils
B: has CHO- that is the only different from chl a and b
Typical Photosynthesis
C3:
Mesophyll: photosynthesis leaf tissue
CO2 enters leaf air spaces---🡪 then diffuses into chloroplasts
a chloroplast is not unlike a cyanobacteria
Light reactions: membranes of thylakoids
sunlight is used to rip protons from water with Oxygen as the by product
split water with photons to produce energy
producing ATP (main function of the mitochondria)
input: NADPH+
waste: O2
Hydrogen gets ripped off to be donated to be given to the NADPH+
dark reactions: in stroma
Rubisco enzyme fixes CO2 into a solid form; and ATP and NADPH convert solid C to food/sugar
all happens without sunlight
Known as the Calvin cycle- where gaseous CO2 is being used to make sugar
This form of Photosynthesis is called C3 because dark reactions have a 3-carbon sugar product
Anything green is photosynthetic and also many things not green also do
Because the pigments present mask the green color underneath
Stomata generally close at night- not all are aways open (not even close)
Many systems in AR are competing for sunlight because it is a limiting factor
Morn graph: must cross the threshold for photosynthesis to be profitable
In the shade, more surface area is needed to collect sunlight
Problem with C3: Rubisco is not specific
Rubisco sometimes is not perfect; it sometimes performs photorespiration and consumes O2 while releasing CO2 (opposite of what is needed) meaning no ATP or sugars is produced
This mistake is why there are not C3 plants in the desert.
A general photosystem:
Embedded in the thylakoid membranes
Proteins complexes that harvest sunlight
Where pigments are found
Photosystem II
Water is split into O2 gas waste and 2H
That is used to generate ATP (in ATP Synthase complex)
The water is split by light energy
Light + H2O 🡪 ATP
Photosystem I
Dependent on Photosystem II
Uses its energy (ATP) produced to fuel its process – NADPH
Photosystems I and II occur in the thylakoid membrane: light reactions
Send ions from areas of high to low concentrations
Electrochemical potential gradient- mores the process
Eukaryotes
Green algae
Monophyletic group (clade)
Any natural group; all descendants from a node/common ancestor
Paraphyletic group:
Not including all descendants from common ancestor/node
Green algae= paraphyletic
Because it does not include embryotic descendants
Ceae= family, anything else= genus
Synapomorphies of Plantae
Chlorophyll a & b in chloroplasts
Starch is storage product of photosynthesis, stored in chloroplast
2-7 thylakoid membranes stacked in grana
Loss of phycobilin/phycobilisomes
Micromonas- green algae
Eukaryote, single celled with a flagella
Pyrenoid present: helps concentrate CO2
Free living and free swimming
Ulvophyceae- green algae- variation in morphology
Unicellular, colonial
Filamentous
parenchymatous (3D colonies; cell division in 3 planes)
coenocytic (multinucleate: mitosis takes place without cytokinesis)
3 types of gametes among the green algae
Isogamy
Anisogamy
Oogamy- only one swims
Zoospores-
can swim and establish new algae- asexual and divide using mitosis
Algae are mostly haploid most of the time
Humans are diploid
Haploid- ln
Diploid 2n
Ulva- kelp/seaweed
Densely packed with chloroplasts
Known as products such as “sea lettuce”
Multicellular
Coenocytic=multinucleate
Nucleus divides without cell wall
Cladophora
Valonia- bubble algae or sailor’s eyeball
Acetabularia
Considered one cell (largest cells on the planet)
Entire organism only has 1 nucleus
Life cycles-
Diplontic
Multicellular diploid stage
Ex: animals
Haplontic
Most of the green algae
Unicellular zygote
Meiosis takes place in zygote
Alternation of generations- unique to plants
Multicellular sporophyte and gametophyte (haploid and diploid stage)
Meiosis takes place in sporophyte
Myosis in zygote🡪 spore
Chlorophyceae- phycoplast
Phycoplasts:
Microtubules
Ensuring daughter
Nuclei remain separated
Only in the Chlorophyceae in the Phylum
Phragmoplasts:
Extra set of Microtubules serving as scaffolding for cell plate
Cyanobacteria lack flagella
Chlamydomonas have flagella
Green algae Plant Cell
Pyrenoid
Helps accumulate/concentrate CO2
CO2 is LESS accessible underwater then in air
Have vacuole
Cell Walls
Single celled
How Chlamydomonas reproduce:
They become the gametes- monogamy
Find compatible gamete
Lock flagella- adhesion and fusion
Projects cellular contents into the other
Now have 2 contents and is a zygote (the diploid phase)
The zygote can stay dormant if necessary until environment is suitable
Miosis always results in 4 new cells, zoospores are the asexual version or can create gametes
These games then fuse and create zygotes – this is Haplontic (defined above)
Volvox- more green algae types
Have flagella (2 per cell)
Eyespot- can sense light and move toward it
Autocolony- daughter colony
Formed asexually- clones
Flagella are formed on the inside of the autocology- how do they get oriented to the outside of the colony?
It self inverts! That is how they get to the outside – they flip inside-out!!
Hydrodictyon- multiple nuclei
Multinucleate cells
Oedogonium- filamentous
Leaves behind scars from cell division (annular scars)
Life Cycle