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Clinical Chem Enzymology

Learning Outcome

  • To understand the clinically important enzymes and isoenzymes, as well as their changes in certain disorders.

Enzyme

  • Biological catalyst that increases the rate of a biochemical reaction

    • catalyses the conversion of substrates → products

    • specific

  • Not undergoing permanent changes or being consumed

  • Alter the rate, NOT the equilibrium point

Enzyme properties

  • Most are proteins or conjugated proteins

  • primary structure - linear sequence of the amino acids

  • secondary structure - three-dimensionally coiled polypeptides

  • tertiary structure - subsequent folding of secondary structure

  • Active site

    • interaction and binding site for substrate

    • a cleft or groove formed by the specific folding pattern of specific amino acid residues

      • determines substrate specificity

Enzyme reaction conditions

Temperature

  • optimal temperature for most enzymes: below 40C

  • doubling of enzymatic activity with an increase of 10C

pH

  • change in pH affects the ionisation state of acidic or basic amino acids

    • change the structure and shape of enzyme → affect/inactivate enzyme activity

  • each enzyme has an optimal pH value, ranging from pH 1.5-8.0

Enzyme concentration

  • ↑enzyme concentration

    • ↑ active sites to convert substrate molecules into products

    • needs to have an excess of substrate

  • zero-order kinetics

    • a reaction under the condition of substrate excess

    • all active sites of enzymes are saturated in an excess of substrate

    • rate of reaction us independent of substrate concentration

    • concentration of product formed over a specified period of time depends on the enzyme concentration

Substrate concentration

  • ↑ substrate concentration, ↑ rate of product formation, at a constant enzyme concentration

  • rate of product formation is linear & proportional to the substrate concentration, until a limiting point is reached

  • limiting point

    • all active sites are occupied with substrates

    • rate of reaction at its maximum

    • further increase in the substrate concentration does not increase the reaction rate

Enzyme Nomenclature

  • Name if the substrate/group targeted by the enzyme, followed by the suffix -ase

    • e.g., urease → enzyme that hydrolyses urea

  • Name indicated the reaction catalysed by the enzyme

    • e.g., glucose oxidase enzyme that catalyses the oxidation of glucose to gluconolactone & hydrogen peroxidase

  • Empirical name, e.g., trypsin & pepsin

Alkaline Phosphate

  • Membrane-bound glycoprotein on the outer layer of cell membrane

  • exists as a group of isoenzymes in different tissue sites

  • found on membranes and cell surfaces of small intestine, kidneys, liver, bone & placenta

  • majority (>80%) of alkaline phosphatase in serum is liver isoenzyme, followed by the bone isoenzyme & a small amount from intestine

  • Physiological functions:

    • catalyses the hydrolysis of phosphate monoesters at alkaline pH

    • releases inorganic phosphate from the substrate

    • requires divalent cations as cofactors

    • only found in the tissues under normal physiological condition

    • increased production under specific condition may release it into circulation

Clinical Relevance

Liver

  • significantly increased activity in obstructive hepatobiliary disease & osteoblast-mediated bone disease

    • elevated serum alkaline phosphatase level

  • biliary tract obstruction: 3-10x the upper limit of reference interval

  • hepatobiliary disorders: alkaline phosphatase + other markers of hepatic function

Bone (bone isoenzyme)

  • elevated serum level is common in osteoblast-related disorders

Cancer

  • primary or metastatic cancer with local bile duct obstruction & increasing leakage of liver isoenzyme

Pregnancy (placental isoenzyme)

  • elevated serum level starting 16 weeks of gestation

  • 2-3x the upper limit of the reference interval in third trimester

Decreased level

  • less common

  • hypophosphatasia, postmenopausal women receiving oestrogen therapy for osteoporosis, Wilson’s disease, magnesium deficiency, hypothyroidism & severe anaemia

Lactate Dehydrogenase

  • An oxidoreductase important in anaerobic metabolic pathway

  • present in almost all tissue, but significant level in heart, skeletal muscle, liver & kidneys

  • higher concentration in the cytoplasm than serum

  • tetramers of either of the 2 types of subunits:

    • muscle (M)

    • heart (H)

  • Exhibits 5 isomeric forms:

    • LDH1 - 4 heart subunits; heart tissue

    • LDH2 - 3 heart & 1 muscle subunits; reticuloendothelial system

    • LDH3 - 2 heart and 2 muscle subunits; lungs

    • LDH4 - 1 heart and 3 muscle subunits; kidneys

    • LDH5 - 4 muscle subunits; liver & skeletal muscle

  • Physiological functions:

    • involved in the anaerobic metabolism of glucose when there is an absence or limited supply of oxygen in tissues

    • catalyses the reversible conversion of pyruvate to lactate, with the use of NADH

    • lactate is transported to the liver

      • reversibly converting lactate to pyruvate

  • Clinical relevance:

    • slight to moderate elevation: acute myocardial infarction, pulmonary embolism, leukaemia, haemolytic anaemia, liver & renal disease

    • significantly elevated: pernicious anaemia, megaloblastic anaemia, certain cancers

SH

Clinical Chem Enzymology

Learning Outcome

  • To understand the clinically important enzymes and isoenzymes, as well as their changes in certain disorders.

Enzyme

  • Biological catalyst that increases the rate of a biochemical reaction

    • catalyses the conversion of substrates → products

    • specific

  • Not undergoing permanent changes or being consumed

  • Alter the rate, NOT the equilibrium point

Enzyme properties

  • Most are proteins or conjugated proteins

  • primary structure - linear sequence of the amino acids

  • secondary structure - three-dimensionally coiled polypeptides

  • tertiary structure - subsequent folding of secondary structure

  • Active site

    • interaction and binding site for substrate

    • a cleft or groove formed by the specific folding pattern of specific amino acid residues

      • determines substrate specificity

Enzyme reaction conditions

Temperature

  • optimal temperature for most enzymes: below 40C

  • doubling of enzymatic activity with an increase of 10C

pH

  • change in pH affects the ionisation state of acidic or basic amino acids

    • change the structure and shape of enzyme → affect/inactivate enzyme activity

  • each enzyme has an optimal pH value, ranging from pH 1.5-8.0

Enzyme concentration

  • ↑enzyme concentration

    • ↑ active sites to convert substrate molecules into products

    • needs to have an excess of substrate

  • zero-order kinetics

    • a reaction under the condition of substrate excess

    • all active sites of enzymes are saturated in an excess of substrate

    • rate of reaction us independent of substrate concentration

    • concentration of product formed over a specified period of time depends on the enzyme concentration

Substrate concentration

  • ↑ substrate concentration, ↑ rate of product formation, at a constant enzyme concentration

  • rate of product formation is linear & proportional to the substrate concentration, until a limiting point is reached

  • limiting point

    • all active sites are occupied with substrates

    • rate of reaction at its maximum

    • further increase in the substrate concentration does not increase the reaction rate

Enzyme Nomenclature

  • Name if the substrate/group targeted by the enzyme, followed by the suffix -ase

    • e.g., urease → enzyme that hydrolyses urea

  • Name indicated the reaction catalysed by the enzyme

    • e.g., glucose oxidase enzyme that catalyses the oxidation of glucose to gluconolactone & hydrogen peroxidase

  • Empirical name, e.g., trypsin & pepsin

Alkaline Phosphate

  • Membrane-bound glycoprotein on the outer layer of cell membrane

  • exists as a group of isoenzymes in different tissue sites

  • found on membranes and cell surfaces of small intestine, kidneys, liver, bone & placenta

  • majority (>80%) of alkaline phosphatase in serum is liver isoenzyme, followed by the bone isoenzyme & a small amount from intestine

  • Physiological functions:

    • catalyses the hydrolysis of phosphate monoesters at alkaline pH

    • releases inorganic phosphate from the substrate

    • requires divalent cations as cofactors

    • only found in the tissues under normal physiological condition

    • increased production under specific condition may release it into circulation

Clinical Relevance

Liver

  • significantly increased activity in obstructive hepatobiliary disease & osteoblast-mediated bone disease

    • elevated serum alkaline phosphatase level

  • biliary tract obstruction: 3-10x the upper limit of reference interval

  • hepatobiliary disorders: alkaline phosphatase + other markers of hepatic function

Bone (bone isoenzyme)

  • elevated serum level is common in osteoblast-related disorders

Cancer

  • primary or metastatic cancer with local bile duct obstruction & increasing leakage of liver isoenzyme

Pregnancy (placental isoenzyme)

  • elevated serum level starting 16 weeks of gestation

  • 2-3x the upper limit of the reference interval in third trimester

Decreased level

  • less common

  • hypophosphatasia, postmenopausal women receiving oestrogen therapy for osteoporosis, Wilson’s disease, magnesium deficiency, hypothyroidism & severe anaemia

Lactate Dehydrogenase

  • An oxidoreductase important in anaerobic metabolic pathway

  • present in almost all tissue, but significant level in heart, skeletal muscle, liver & kidneys

  • higher concentration in the cytoplasm than serum

  • tetramers of either of the 2 types of subunits:

    • muscle (M)

    • heart (H)

  • Exhibits 5 isomeric forms:

    • LDH1 - 4 heart subunits; heart tissue

    • LDH2 - 3 heart & 1 muscle subunits; reticuloendothelial system

    • LDH3 - 2 heart and 2 muscle subunits; lungs

    • LDH4 - 1 heart and 3 muscle subunits; kidneys

    • LDH5 - 4 muscle subunits; liver & skeletal muscle

  • Physiological functions:

    • involved in the anaerobic metabolism of glucose when there is an absence or limited supply of oxygen in tissues

    • catalyses the reversible conversion of pyruvate to lactate, with the use of NADH

    • lactate is transported to the liver

      • reversibly converting lactate to pyruvate

  • Clinical relevance:

    • slight to moderate elevation: acute myocardial infarction, pulmonary embolism, leukaemia, haemolytic anaemia, liver & renal disease

    • significantly elevated: pernicious anaemia, megaloblastic anaemia, certain cancers