Visual system
Eyes are part of your brain
Light is electromagnetic radiation
Wave amplitude = brightness
Amplitude - height of wave
Wavelength = color
Wavelength - length of wave
The retina
Back of your eyes
Where transduction happens
Transduction - energy from environment converted to change membrane potential
Light-sensitive
Receptor cells + neurons
We’re actually viewing the world upside down
2 types of photo receptors, rods and cones
Rods and cones
120 million rods
sensitive to dim light, but not color
night vision – best in dim light
function well in low light
more toward outsides of retina
6 million cones
operate best in light
responds to color
3 types, sensitive to red, green, blue
more toward middle of retina
3 types of cones: red, green, and blue
Light get translated into the language of the nervous system
Phototransduction
photopigment molecules:
rhodopsin (rods)
iodopsin (cones; 3 types)
Photoreceptors constantly are releasing neurotransmitters in the dark
Receptive field
Refers to the portion of space that can make a neuron respond when to move
Refers to what part of the visual field (or what part of the world that’s in front of me) that one particular neuron in my retina is paying attention to
Retina contains a map of the world in front of you upside down
The visual field
Optical chiasm
• nasal information crosses, temporal information does not
• so, left visual field goes to right side of brain and vice-versa
Retinal disparity - helps estimate the distance of how far away objects are from you
nasal = by the nose (medial)
temporal = by the temples (lateral)
The main visual pathway (for conscious vision)
retinal ganglion cells -> LGN of thalamus -> primary visual cortex
retinotopic map in retina, LGN, and V1.
receptive fields along the whole pathway.
retinal cells code light/dark contrast and color
primary visual cortex cells code (aka communicate information) color, orientation, movement, spatial frequency, texture, retinal disparity
visual association cortex cells code color, form, movement, spatial location
simple processing → complex
10-20% of the visual cortex is devoted to encoding the fovea
The main pathway isnt the ONLY pathway
retinal ganglion cells project to one of five targets:
suprachiasmatic nucleus accessory
optic system
pretectum
superior colliculus
lateral geniculate nucleus
Blindsight - an individual who is blind, who cannot see, who has no conscious experience in the visual world
Video was shown of a blind person being able to complete this obstacle course without bumping into any of the objects. How was this possible? Because the brain was damaged, specifically the visual primary cortex. The eyes however are fine, and are receiving information through the retinal ganglion cells which influences their behavior.
V1 = striate cortex
Each spot in your visual field has a location column or hypercolumn
Orientation selective neurons are one example of feature detectors
Feature detectors are neurons that basically display a preference for a particular type of input
They can be simple
They monitor a particular region of space and they have excitatory areas
They can also be complex (or even hyper complex)
Basically complex versions of the simple ones
Modules
V1 is organized into what is called modules
Each module is responsible for detecting all the different kinds of features that are found in the same chunk of visual space
Each module receives input from both eyes
~2500 modules
each one analyze various visual
features in a very small chunk of
visual space
• orientation
• texture
• color
• retinal disparity (for depth
perception)
black lines = borders between columns receiving signals from L & R eyes (ocular dominance columns); responsible for depth perception
white ovals = groups of neurons responsible for color perception (“blobs”).
‘pinwheels' are formed by neurons involved in the perception of shape, with each color marking neurons responsible for a particular orientation in space.
Extrastriate cortex (extrastriate means outside of the straight cortex)
2 different “streams” of information:
Dorsal stream: where? (analysis of motion)
Ventral stream: what? (object recognition)
2 different pathways; one for figuring out where things are and another for figuring out what things are
At least 20 other visual cortical areas that are outside the primary visual cortex
Ventral stream; the ‘what’ pathway
Ventral occipital lobe & temporal lobe
Task is object recognition
(it would be viewpoint-independent (or invariant) if the same cell fired for all of these images)
Viewpoint invariant - they would fire to an object no matter which way the object is turned
Viewpoint dependent or view centered - they only fire if something’s in a particular viewpoint
Problems with perception
Agnosia is caused by brain damage
Agnosia - loss of the ability to recognize some things
Dorsal stream; the ‘where’ pathway
Dorsal occipital lobe & parietal lobe
Figures out where the object is in space
main functions: visuo-motor control (actions) e.g., locomotion, grasping
Handles a lot of automatic computations
For example, when ur tired and u need to brush ur teeth, and without thinking about it ur toothbrush is already in ur hands
‘’Vision for action’
Critical for locating objects in space and figuring out how to take action involving objects, such as things like grabbing
parietal lobe has many specialized areas for using vision to guide actions in space
different functions require different information
dorsal stream: viewer centered viewpoint-dependent recognition
detect spatiotemporal variability
ventral stream: object-centered viewpoint-independent recognition
ignore spatiotemporal variability
In everyday behavior, both streams work together e.g. they are integrated)
Dorsal stream damage
akinetopsia or movement agnosia
can’t perceive movement
damage to V5/MT
Balint’s syndrome
can’t perceive the location of objects
damage to bilateral posterior parietal cortex
Direction of information flow
feedforward: sensory->association
feedback: association->sensory
Which of the following are true about the direction of information flow in the visual system?
ANSWERS;
The optic chiasm is where some visual information crosses over to the contralateral hemisphere (while some other information doesn’t cross over)
Each eye gets information from both halves (both the left and the right) of the visual field
Information in the left visual field ends up in the right hemisphere
Select the items about receptive fields of neurons in the visual system that are correct.
ANSWERS;
the retinal ganglion cells with smaller receptive fields are responsible for things like reading very fine print
the receptive fields of retinal ganglion cells in the fovea are smaller; receptive fields of retinal ganglion cells in the periphery are larger
retinal ganglion cells that synapse on more photoreceptors have larger receptive fields
All the visual information coming in from your retinas is sent to all the same areas of your brain for processing.
ANSWER; False
Why might people who are blind still be able to use some visual information to guide their behavior?
ANSWER; they might have damage to parts of the pathway associated with conscious awareness of visual information, but visual information might still be getting through to other pathways they are not aware of.
A person with prosopagnosia has difficulty with what:
ANSWER: face recognition
Which of these is more accurate about the organization of V1 (primary visual cortex)?
ANSWER: It has all these little processing units responsible for doing different things, like responding to different orientations, textures, etc. All the neurons responsible for monitoring one specific area of space (like part of Chuck Close’s nose) live together in the same part of V1, and inside the part where they live, there are some neurons that detect one specific orientation (like “/”) and there are other neurons that detect other specific orientations (like “\”). Then, the neurons that are responsible for monitoring other parts of space (like part of Chuck Close’s ear) live in a different part of V1.
All neurons in V1 receive inputs from both the left eye and the right eye, in equal proportion (e.g. 50/50).
ANSWER: False
Which of these cells fires an action potential that is sent directly down the optic nerve? (by direct, I mean without synapsing on another neuron).
ANSWER: retinal ganglion cell
Transduction means:
ANSWER: converting energy out in the world to a language that neurons speak
A neuron that is orientation-selective would:
ANSWER: fire the most when a specific angle is visible, and fire less (or not at all) in response to different angles
Cell A responds to only one exact angle at one exact part of the visual field. Cell B responds to the same angle as Cell A, but also responds to a few similar angles as well, even at slightly different locations. Cell A is a ____ and Cell B is a ____.
ANSWER: simple cell; complex cell.
There is only one pathway for visual information in the brain.
ANSWER: False
Which of these properties are true of cones: (read carefully -- select all the correct responses!)
ANSWERS:
they are responsible for clarity
they are responsible for color vision
they are primarily located in the center of the retina
What is the primary (and first) destination of the axons of most of the retinal ganglion cells? (E.g. where will they synapse on the next neurons in the pathway).
ANSWER: the lateral geniculate nucleus of the thalamus
Humans can see all possible light wavelengths.
ANSWER: False
The retina is located at which part of the eye:
ANSWER: the very back (closest to your thalamus)
Your roommate slid a nice warm mug across the table to you on a cold day. You are looking at it and wondering whether it is coffee, tea, or cocoa, and since you like them all, you’re thinking about having a sip to warm you up. As you prepare to lift the mug, which bit of information does your ventral stream care more about, in recognizing what’s in the mug before you have your first sip?
ANSWER: what color the liquid is
If you are a neurologist and seeing a patient who had a stroke and is now having trouble with categorizing the objects in front of them (e.g. that’s a cube, that’s a hammer), which part of their visual system would you suspect the stroke had damaged most?
ANSWER: ventral
Your roommate slid a nice warm mug across the table to you on a cold day. You are looking at it and wondering whether it is coffee, tea, or cocoa, and since you like them all, you’re thinking about having a sip to warm you up. As you prepare to lift the mug, which bit of information does your dorsal stream care more about than your ventral stream?
ANSWER: which way the handle is pointing
In a soccer match, visual processing of the ball that’s coming toward you so that your foot can make contact with it successfully is more of a ____ stream task.
ANSWER; dorsal
You are a neurologist examining a patient and give them two pictures, one of a rectangle the long way (like a truck) and the other of a rectangle the tall way (like a skyscraper). The patient reports that they are the same: they cannot see any difference. You then show the same shapes to the patient, one at a time, and ask them to pretend they are picking up the shape with their hand, and you make note of how they form their hand. You observe that they correctly calibrate their grip to the different shapes, even though they reported that the shapes looked the same. Where do you suspect this patient is having problems?
ANSWER: extrastriate cortex in the ventral stream
You are a med student studying a case report. A patient is admitted with brain damage due to hypoxia (lack of oxygen) and presents with some specific impairments. Basic visual capabilities are preserved. They can detect when light is in a part of their visual field, and they have normal shape processing, and successfully recognize all the categories of objects they were tested on. If you ask them to look in a particular part of space, though, they can’t follow the instruction, and if you ask them to move their hand toward an object you are holding up, while they say they can see it, they can’t quite get their hand to the right spot. Which lobe do you conclude has damage?
ANSWER: parietal
Sensation - converting energy out in the world into a language the nervous system can understand
When an object moves or vibrates, this causes pressure changes in the air
Changes in pressure are sound waves
Sound waves can be both simple and complex
Loudness
We measure loudness on a decibel scale dB
Wavelength is how long until the pattern repeats and frequency is how many times the pattern repeats in a particular time
Higher frequency = more repeats aka more bumps
Frequencies are measured in units of hertz
Hz = hertz = how many cycles (or pattern repeats) per second
Audition
Transduction - we take the energy of the world and convert it to the language of neurons
Audition is the transduction of sound waves into neural code
Humans detect ~ 20 – 20,000 Hz
most sensitive to 2,000 – 4,000 Hz (speaking range)
ear transduces air pressure → mechanical energy → neural activity
Transduction occurs in the cochlea.
Fluid in the cochlea is rich in potassium.
Cochlear nerve
The nerves that make up the cochlear nerve are bipolar
Cochlear nerve is one of your cranial nerves and connects to the medulla
transduction summary
vibration of ossicles →
deflects membrane →
stretches hair cells →
opens K+ and Ca++ channels →
K+ and Ca++ influx →
hair cells release NT →
excites neurons of cochlear (auditory) nerve →
Brain
Different frequency sound waves cause different parts of the vascular membrane to move
The brain uses rate coding to encode the very lowest sound frequencies
Place coding is used in cochlear implants to help those who have hearing loss
medium-to-high frequencies: place coding
low frequencies: rate coding
Loudness
Louder sounds make the eardrums and ossicles of the bone vibrate more
medium-to-high frequencies: firing rate (louder = fire faster)
low frequencies: number of neurons firing (louder = more neurons)
Localization - determining where a sound is coming from
**left off on lecture video 2 at timestamp 6:35. I just cant do this rn bro TAT im still tired, still sick, havent gotten decent sleep in days now i cant do this.
Say you are a robotics engineer working on robots to be good company for lonely elderly nursing home residents. (This is a real thing!) You are currently trying to design the robot equivalent of cutaneous sensory receptors and you are taking your inspiration from your extensive knowledge of human cutaneous sensory receptors. Your goal is to specifically design sensory receptors that detect the sustained pressure associated with resting a head on a shoulder or holding a hand (as opposed to a sensory receptor that would detect a quick tap on the shoulder, like someone trying to get the robot’s attention). Based on what you know about human somatosensation, do you want these receptors to be:
Answer: slowly adapting (they fire immediately when they detect pressure, and then keep firing as long as the same pressure stimulus is there)
The area of skin supplied by a single spinal nerve is:
Answer: a dermatome, and adjacent spinal nerves supply nearby areas of skin.
Say you are sitting on the floor with your legs criss-crossed and your eyes closed. Which of these types of information reflects proprioceptive sensation?
Answer: you know that your left ankle is on top of your right thigh.
All kinds of somatosensory information (touch, pressure, pain, temperature, proprioception) takes exactly the same pathway (sequence of regions & tracts) from the periphery (e.g. the skin) all the way up to the brain.
Answer: False
Damage to which part of auditory association cortex can impair the ability to extract the emotional content of speech?
Answer: right
Which of these types of somatosensory receptors responds to pain?
Answer: free nerve endings
While the retina has a map of the visual world (retinotopic map), there is nothing similar in the auditory system that encodes sound information (like pitch) in an orderly spatial organization.
Answer: False
If a group of hair cells in the cochlea is moved in the direction of the longest hair in the bunch, which of these would occur? [ Mark all the correct responses ].
Answers:
ions enter channel
increased rate of action potentials
ion channel pulled open
You are born with the somatosensory cortex organization you will have throughout your entire life; there is no plasticity in that system.
Answ: False
Which of the following aspects of information does the auditory system make use of for localizing sound? [ Mark all the correct responses ].
Answers:
timbre differences
intensity differences
phase differences
Sudden head rotations (with acceleration) are detected in ______, specifically by ____.
A: a semicircular canal; hair cells
If a group of hair cells in the cochlea is moved in the direction of the shortest hair in the bunch, which of these would occur? [ Mark all the correct responses ].
Answers:
ion channel no longer pulled open
reduced tension on tip link
ions cannot enter channel
What principle of how the auditory system is organized is the reason cochlear implants work?
A: place coding of pitch information
Which part of the vestibular system starts to respond as you move your head from an upright position to a horizontal position (like a pillow)?
A: saccule
Say Cherese is experiencing chronic pain and it is not possible to eliminate the underlying cause of the pain. Her doctors are trying to help diminish her experience of the pain and the emotional suffering it is causing here, even though they know they cannot change the pain sensation itself. What part of the brain are her doctors trying to target? (They are trying to target the brain regions associated specifically with her emotional experience of the pain, and not the regions associated with pain sensations in themselves.)
A; anterior cingulate cortex
Humans can hear all frequencies of sound.
A; False
You are about to win the Nobel prize due to your recent discovery of a brand new sense you discovered that humans have. Congratulations! This new sense is processed by a specialized organs in our pineal glands and it picks up on all wavelengths of light, not just the visible spectrum -- and we don’t experience this sense as seeing light, it’s more of a feeling of light instead, because the receptors for this sense are cutaneous – they are in the skin – and then project to the spinal cord and finally the to the new sensory organ in the pineal gland. You found that this new specialized sensory organ in the pineal gland has a topographic organization, consistent with what we saw in the other senses. What would having a topographic organization mean for this new sense?
A; the spatial organization of neurons in the specialized organ in the pineal gland reflects the spatial organization of the receptors on your skin. neurons detecting full-spectrum light on one finger are nearby to neurons detecting full-spectrum light on another finger, but far away from neurons detecting full-spectrum light on your toe.
Which of these parts of the auditory system is most analogous to photoreceptors in the visual system (e.g. performs a comparable role)?
A; hair cells
Which of these is both correct and an example of place coding of pitch?
A; the basilar membrane is stimulated closer to the eardrum for a flute, and further away from the eardrum for a sound like an oboe.
Sound 1 has a low amplitude and a high frequency. Sound 2 has high amplitude and low frequency. Which of these is most plausible?
Object 1 is a flute played quietly so as not to wake someone. Object 2 is the bass from the stereo you can hear from the next car at a stoplight.
Match the pathway with the type of information it carries.
spinothalamic tract - temperature & pain; dorsal columns - touch & kinesthesia
Receptors for the cutaneous senses respond to what:
pressure, vibration, temperature
Similarly to information from vision and audition, somatosensory information gets sent to specific thalamic nuclei on the way to the rest of the brain.
True
The concept of labeled lines in neuroscience refers to which of these ideas: (note: when I say kinds or types of “information”, think of things like light vs sound vs pressure vs temperature)
in principle, someone could label bundles of axons according to the type of information they carry (if they had the right kind of labeling technology, or a detailed neuroanatomical model). This is because different types of information are detected by different receptors, and sent to the brain along different axons, and that information is kept separate rather than being mingled together before it gets to the brain.
Give and explain an example of hierarchical processing in the brain – the idea that the brain does simple things first, and those simple things get combined into more complicated things, and even more complicated things, as information gets further and further from sensory areas. Your answer needs to have an explanation – just a single word is not sufficient. (There are many possible examples, you only need to describe one. Your answer should discuss both different brain AREAS, and their different JOBS -- e.g. what types of information is processed in the brain areas you are discussing. Some examples were covered in both this and the previous module, and your examples can come from either one. )
(THIS WAS MY ANSWER) Our visual system is an example of hierarchical processing in the brain. This process begins at the retinal ganglion cells where they process the lightness, darkness, and contrast. Then it goes to the lateral geniculate nucleus of the thalamus where it receives the information from the ganglion cells and sends the information to the primary visual cortex. From there, the primary visual cortex codes the color, orientation, and movement. Finally, the visual association cortex processes the information received from the primary visual cortex to analyze.
Prof answer: There are many possible examples, but here are some. Examples of simple types of information in the auditory system would be tones (processed in primary auditory cortex) and more complex information would be melodies or voices (processed in auditory association cortex). (Have a look at slide 24 in the lecture PDF for more info on this). Or, in the visual system, simple lightness/darkness in the retina->LGN->V1 and more complex shapes/letters/faces in visual association areas
Movement and Sleep
Skeletal ‘striated’ muscle
Consists of hundreds of muscle fibers
each fiber innervated by a single motor neuron axon
Muscles come in anatongist pairs
Movement occurs because muscles contract
Muscles contracting can only pull, they cannot push
We can create a full range of movements bc we have muscles in different locations that counteract one another. These are considered antagonist pairs
These pairs consists of flexors which pull things toward the body, and extensors which pull away from the body
The ‘final common pathway’
all motor pathways ultimately converge on simple circuits in the spinal cord that go directly to effector muscle
lower motor neurons in ventral horn
exit via ventral root
innervate muscles, cause contraction
The motor unit
Motor units are the site of one motor neuron and all the different muscle fibers it innervates
Different sizes of motor units across different areas of the body
leg: 1 motor neuron : 1000+ muscle fibers
finger: 1 motor neuron : 3 muscle fibers
Motor units are activated by the nervous system in a specific order
Smaller motor units are going to be activated before larger motor units
small first (less force)
large last (more force)
Neuromuscular junction
Synapse between the axon of the motor neuron and muscle fiber
Synapse is called neuromuscular junction
action potential in axon → ACh release
ACh binds to receptors on muscle fiber → depolarization
Na+ channels open → action potential in fiber
action potential → sarcoplasmic reticulum releases Ca2+
Excitation-contraction coupling
Muscle fibers are made of 2 different types of filaments; actin and myosin
Actin is think
Myosin is thick
When the action potential in the muscle fiber itself causes calcium ions to be released, the myosin filaments interact with the actin filaments
muscle length shortens = muscle contraction!
Motor neurons & muscle fibers
Extrafusal fibers are innervated by alpha motor neurons
intrafusal fibers (spindles) are innervated by gamma motor neurons (and sensory neurons)
stretch is detected by both intrafusal fibers and Golgi tendon organ
Golgi tendon organ’s main job is to measure the total amount of stretch that’s exerted by the muscle on the bones
Spinal control of movement
Monosynaptic stretch reflex
Example is when the doctor taps your knee to test your reflex
This reflex only involves 2 neurons: a sensory neuron that registers the tap and a motor neuron that causes muscle contraction
Polysynaptic stretch reflex
This sort of movement is done without the brain– it’s only done by the spinal cord
Spinal control of complex movement
Types of spinal movement:
reflexes (e.g., stretch)
fancier (e.g., reciprocal inhibition)
fanciest (e.g., swimming, walking) – central pattern generators
Control of movement by the brain
Motor system is hierarchical
highest level - association cortex + basal ganglia - strategy
middle level - motor cortex+cerebellum - tactics
lowest level - brain stem+spinal cord - execution
Descending spinal tracts
Lateral pathways
Under cortical control
Responsible for voluntary movement
Ventromedial pathways
Big role in posture, stabilization and locomotion
Under control of the brain stem, which means we’re not thinking about it
Lateral pathways
Most of these pathways originate in the cortex
Most originate in the motor cortex
Corticospinal tract
Starts at cortex, ends at spinal cord
Synapses on the spinal nerves
independent limb movements
arm, hand, finger movements
trunk, legs, feet
Corticobulbar tract
Cranial nerves; responsible for the movement of facial muscles
face, neck, tongue, some eye muscles
Doesn't go all the way to the spinal cord, going to sit at the medulla bc that’s where most of the cranial nerve roots are
Another name for the medulla is bald; which is why it’s called corticobulbar
Rubrospinal tract
Evolutionary older tract
Originates in the red nucleus of the brain stem
Involved in independent movements of forearms, hands (not fingers)
Synapses on the spinal cord
Ventromedial pathways
Responsible for automatic movements
Uses sensory information about balance, body position, and the visual world to maintain your balance and maintain body posture
Originates in the brain stem, and projects onto the spinal neurons that control the trunk muscles as well as the large muscles like the shoulder, elbow, pelvis, knee
Vestibulospinal tracts
Carries vestibular information about the location of the body in the world
Plays an important role in keeping your head stabilized and helping you maintain an upright and balanced posture
head stability, upright & balanced posture
Tectospinal tract
Originates in the curricula of the midbrain
orient to new sensory information
Ex. helps u swivel your head in the direction of a sound, or move your head towards where a light was flashed
Reticulospinal tracts
Originates in the reticular nuclei throughout the brain stem
2 different tracts; lateral and medial
(semi)automatic functions
Responsible for things like sneezing, coughing, vomiting
muscle tone
posture
locomotion
Hierarchical organization of motor systems
basic patterns generated at each level
progressively higher levels select and modify patterns
The motor system is a collection of loops
Motor cortex
Premotor cortex, supplementary motor areas:
Where planning and coordinating happens
Plans what movement you’re gonna do and how you’re gonna do it
”what” -> ”how”
Primary motor cortex:
execution of motor patterns
go”
Premotor cortex
Involved in planning and coordinating voluntary movements
cells are active during intention to make particular movements
Has a somatotopic organization
Supplementary motor area (SMA)
Also involved in motor planning
Involved in sequences of behaviors
Also plays an important role in coordinating movements across both sides of the body
Primary motor cortex (M1)
execution of movement
fine motor control
topographical organization
~ 20% of upper motor neurons directly innervate contralateral motor neurons
but typically more synapses are involved!
Motor cortex damage
Motor cortex damage is associated with disruptions of fine motor control
Using hands and fingers
partial paralysis (paresis, not plegia)
“disinclined” to use affected limb
fine motor control disrupted
decreased speed, accuracy, force (“clumsy”)
Disrupts people’s abilities to do tasks like play multiple musical instruments, handwriting, sewing
Basal Ganglia modulation
Plays an important role in the selection of movement and in motivation
Has no direct input from periphery sensory systems and no direct outputs to the spinal motor circuits. It modulates things that are going on, but gets no direct sensory input or output
Plays an important role in motor systems
Basal Ganglia
Direct pathway
Striatum = caudate + putamen
at rest, globus pallidus inhibits thalamic activation of cortex. (spontaneous neural activity)
cortex ↓ caudate ↓ putamen ↓ globus pallidus (excitation) ↓ thalamus (inhibition)
Note: excitation means what it sounds like: excite, going up, firing action potentials. Inhibition means to quiet down, calm down, shut up!! Shhh!! Ur being too loud!!
when striatum is activated, globus pallidus is inhibited, allowing thalamus to activate cortex.
cortex ↓ caudate (excitation) ↓ putamen (excitation) ↓ globus pallidus (inhibition) ↓ thalamus (excitation)
Neurons kinda fire randomly in the nervous system for no reason sometimes
Basal Ganglia: Function
Controls the amplitude + direction of movement
Basically how much movement and the direction of the movement.
Plays a role in the selection and initiation of slow continuous voluntary movements
Eg. smooth pursuit. Smooth pursuit is basically following a moving object with your eye. For example, a red cross moving across the screen.
Basal Ganglia: Dysfunction
Parkinson’s Disease
degeneration of substantia nigra
loss of DA → inhibition of thalamocortical loop → less movement
Excitatory inputs to the striatum inhibit the globus pallidus, which has the effect of removing the brakes on the thalamus and allowing the thalamus to communicate up to the cortex
In healthy individuals, the dopaminergic inputs from the substantia nigra to the putamen are responsible for putting the brakes on the globus pallidus, which in turn removes the brakes from the thalamocortical loop which allows the thalamus to excite the cortex which helps us initiate and select movements
In Parkinson’s disease, we lose those dopaminergic inputs to the putamen. The globus pallidus stays at rest bc it’s not getting activated which means it keeps those breaks on the thalamocortical loop which results in less movement.
symptoms:
tremors at rest
muscular rigidity
akinesia: difficulty in initiating voluntary movement
Huntington’s Disease
Genetic disorder + more rare than Parkinson’s
Characterized by progressive and selective neurodegeneration
degeneration results in disinhibition of thalamocortical loop → too much movement
symptoms:
uncontrollable, involuntary ballistic arm movements, facial twitches
writhing movements of limbs, tremors, dementia
Cerebellum
Has an important role in error correction, timing, and motor learning
Cerebellum gets input from the spinal cord, cortex (via pons)
Cerebellum sends outputs to the thalamus, just like the basal ganglia does
It has a way to talk to motor neurons indirectly
Also sends outputs to the red nucleus
Purkinje cells → deep nuclei → thalamus, red nucleus
Contains more than half of the neurons in the entire central nervous system
Cerebellum: Function
Gets 2 types of information: intended movement and about what’s happening in the world
It can compare intentions with reality and then instruct the motor cortex indirectly via those connections
error correction of ongoing movement
motor learning
especially critical in programming rapid movements
timing
maintains muscle tone
Balance
Cerebellum: Dysfunction
Jerky, inaccurate movements, loss of balance
Loss of muscle tone or weakness
Intention tremor
tremor during movement
Decomposition/fragmentation of movement
small, trial-and-error movements toward goal instead of single, efficient ballistic movements
ataxia
balance, posture, coordination problems
posterior parietal & prefrontal cortex
Why sleep?
All vertebrates sleep
Hypothesized functions of sleep
Converving energy (probably not)
Restoration of body (maybe)
Consolidation of memory (yes)
“Cleaning in the brain” (yes)
Sleep deprivation is a major public health problem. Even losing 1 hour of sleep can have profound negative consequences.
When the clock goes forward and we loose an hour of sleep (bc daylight saving’s time or whatnot), there’s a 24% increase in heart attacks
When the clock goes backward and we gain an hour of sleep, there’s a 25% reduction in heart attacks
Similar patterns for car accidents
There’s a strong link between sleep and immune function
People who had 4 hours of sleep had a 70% reduction in natural killer cells, which are critical parts in your immune system
restricted/short/poor quality sleep is linked with…..
impaired memory, judgement
immune suppression, increased cancer risk
obesity, type II diabetes
dementia
can precede and/or exacerbate some forms of mental illness (sz, bp)
decreased reproductive health
decreased life span
Studying sleep in humans
EEG is usually the way sleep is studied in humans
EEG – electroencephalogram
EOG – electrooculogram
EMG – electromyogram
EEG Activity
When all neurons are firing at about the same time, their electrical messages are synchronized and they appear as a large wave
If neurons are firing in a less coordinated way, their electrical messages are desynchronized and they appear as a small, more chaotic looking wave form without a clear pattern
Desynchronization typically appears when someone is alert and paying attention to events in the environment or is thinking actively
EEG when awake
Alpha activity
Associated with being more drowsy and relaxed
8–12Hz
Beta activity
Associated with being attentive, like your brain is busy processing things
13–30Hz
Amplitude is lower
Beta activity is more desynchronized
EEG when asleep
Stage 1: NonREM, theta (3.5-7.5 Hz)
Transition between being awake and being asleep
Your muscles are still active, your eyes are rolling, and it’s easy to get woken up
Theta activity is a slower frequency, higher amplitude pattern that indiciates that the firing of neurons is becoming more synchronized
Stage where you may experience hypnotic jerk
Stage 2: NREM, sleep spindles, K complexes
Sleep spindles are high frequency bursts
Sleep spindles play a role in memory consolidation
K complexes are sudden big spikes
K complexes reflect a quick inhibition of neural activity that keeps you asleep when there’s an unimportant external stimulus eg when the house creaks
Stage 3: slow wave sleep, delta (<3.5Hz)
Frequencies are even lower, and amplitude is higher
Amplitude reflects neurons firing in a very coordinated way
Deepest stage of sleep
Unresponsive to external stimuli, and if they do get awaken, they will be groggy and confused
Metabolic activity of the cortex decreases considerably, which suggests that the cortex rests during sleep
REM: REM, theta+beta
Occurs an hour and a half after you fall asleep
EEG activity differs considerably during REM sleep
High frequency, low amplitude + desynchronized
No clear pattern
Combination of theta and beta activity
REM (Rapid Eye Movement) Sleep
When we dream
Difference in EEG during this stage is thought to represent the brain’s activity during dreaming
Heart rate and respiration are irregular
Muscles are paralyzed during REM sleep, other than the twitching of your hands and your feet + your eyes darting around
This sleep paralysis keeps you from acting out your dreams
You can be easily awakened during REM sleep
Low activity during rem sleep in the visual cortex, or striate cortex (bc ur not getting visual input bc ur sleep… duh)
High activity in extrastriate cortex, which reflects the visual components to your dreams
Low activity in prefrontal cortex (bc ur not doing a lot of planning or organization in your dreams)
Cycle of sleep stages
Cycle thru the sleep stages 4-5 times a night, each cycle lasting 90 minutes each
periods of REM increase in length and frequency
Experience more REM sleep in the later parts of the nights
Sleep stages and learning
Sleep is really important in learning + consolidating memories
Learning and memory formation involves modification to the synapses between neurons in your brain. That is what learning is. It is a change in your brain conductivity
The more important functions of sleep is consolidating the synapses that reflect the really important stuff that you need to remember and discarding the changes that aren’t so important
Different stages of sleep help different kinds of memories
memory consolidation requires both SWS aka short wave sleep & REM, but ….
SWS consolidates declarative memories
Eg; Springfield is the capital of Illonois
REM sleep consolidates nondeclarative memories
Eg; how to ride a bike
mice deprived of REM sleep learn maze slower
rats and people increase REM sleep when learning new task
hippocampal place cells fire at certain places in maze and then exhibit same pattern during REM sleep, as if “remembering” maze
When people are learning how to do a task, they are naturally increasing their rem sleep
An important function of REM sleep is to let the brain replay or rehearse a new thing you learned
After you teach a rat to learn a brand new maze, during REM sleep, their hippocampal place cells fire in the exact same order that they were activated when they were firing as the rat was doing the maze itself
Brain mechanisms; sleep
Adenosine
Neuromodulator
Has a supply of glycogen, which is a nutrient
Glycogen gets converted into fuel for the brain when awake
Fall in the level of glycogen causes the level of extracellular adenosine to increase
Adenosine inhibits neural activity and promotes sleep. While asleep, glycogen supply gets replenished during short wave sleep and the cycles continue
Caffeine blocks adenosine receptors. This prevents the inhibitory effect on neural activity and reduces the effects of sleep deprivation
Brain mechanisms: wakefulness
All of these have high levels during wakefulness and low levels during SWS. All except Ach are also low during SWS
acetylcholine (pons, basal forebrain (BF), medial septum)
Related to adenosine
cortical desynchrony, cortical/hippocampal activation
alertness, behavioral arousal
norepinephrine (locus coeruleus)
attention: vigilance, noticing important stimuli
serotonin (raphe nuclei)
activating behavior
maintaining concentration
histamine (tuberomammillary nucleus)
directly increase activation/arousal, indirectly increase Ach
Makes you awake
orexin (lateral hypothalamus)
Orexin
Peptide neurotransmitter that’s released by neurons in the lateral hypothalamus
projects nearly everywhere in brain, excitatory effect
Sleep and wakefullness are some of the functions
Has a large role in appetite
Involved in thermoregulation
High during wakefulness and especially during exploratory activity
Orexin neurons fire fast during alert or active waking and have their highest rate of firing during this exploratory behavior
Fires more slowly during quiet waking, slow wave sleep, and REM sleep
Modafinal (drug used to treat narcolepsy) produces a learning effect by stimulating the release of orexin
sleep <-> wake transitions
neurons triggering SWS are in ventrolateral preoptic area (VLPOA):
reciprocally connected via GABAergic neurons to “wake” areas: BF, LC, TMN, raphe
active during sleep (stimulation → animal falls asleep)
destruction → insomnia, coma, death
sleep is not a passive process! actively generated/maintained.
You cant be asleep and awake at the same time
Circadian rhythms / biological clock
Controlled by the suprachiasmatic nucleus (SCN) of the hypothalamus
light cues (zeitgebers = “time-givers”) resets clock
melanopsin in some retinal ganglion cells
retinohypothalamic pathway (retina->SCN)
projects indirectly to vIPOA & orexinergic neurons
suppresses pineal gland secretion of melatonin
____ is associated with difficulty initiating voluntary movements and ____; ____ is associated with uncontrollable involuntary movements and _____.
Parkinsons’s, degeneration of dopaminergic inputs to the basal ganglia; Huntington’s, degeneration of the basal ganglia
Simon is a game from the 80s. The different colors light up in a sequence (say, red->blue->yellow->blue) and you have to remember the sequence and touch the buttons in the right order. Say someone had damage to a part of the motor and this damage made them unable to play Simon, but they could still perform other types of movements normally. Which part of the motor system is most consistent with this profile?
supplementary motor area (SMA)
What happens in the basal ganglia loop (“the direct pathway”) when the striatum is activated?
the globus pallidus is inhibited. This removes the inhibition the globus pallidus was supplying to the thalamus, which allows the thalamus to send excitatory input to the cortex.
No matter how complex, all movements involving your arms and/or legs ultimately involve lower motor neurons in the spinal cord.
True
Electrically stimulating the “hand area” in primary motor cortex causes what?
one movement of the contralateral hand
When the globus pallidus is “at rest”, that means it is not firing any action potentials at all.
False
What is the effect of on the basal ganglia loop (the “direct pathway”) when the basal ganglia is “at rest”?
the thalmus is inhibited, and therefore does not send excitatory input to motor cortex
Which of these motor system components is involved in error correction, in part by comparing the intended movement with what is actually happening?
Cerebellum
Which of these muscle components are involved in detecting sensory information related to proprioception? (hint: think stretch) Mark all correct responses.
intrafusal muscle fibers
Golgi tendon organ
If you are interested in facial movements, which of these tracts should you read about first?
corticobulbar tract, because it serves the cranial nerves
___ is a flexor muscle; ___ is an extensor muscle.
bicep; tricep
Which statement is true?
muscles only pull
Which of these pathways is most strongly associated with voluntary movements?
lateral pathways
Which of these is not consistent with motor cortex damage?
complete inability to use a part of the body
If you are interested in studying movements that occur outside of our conscious awareness, which of these pathways should you start reading about first?
vendromedial pathways
You’re at the doctor and they tap your knee to make sure your leg extends. How many synapses did that reflex involve?
1
Which of these things occur at the neuromuscular junction:
action potential of motor neuron causes acetylcholine release and action potential in muscle fiber
Which of these is not a function of sleep?
allowing all your neurons to completely stop firing so the brain can rest
Say region A and region B mutually inhibit one another. In other words, when region A is active, it sends inhibitory input to region B. And when region B is active, it sends inhibitory input to region A. (This only refers to the connections between these two regions and says nothing about any other inputs that may be involved. Assume region A and region B send the same “amount” of inhibition.) Which of these statements is true? [ select all that apply ]
There are neural circuits regulating transitions in and out of REM sleep that are wired in this way.
Only region A or region B can be active at any given time. They cannot both be active at the same time.
There are neural circuits regulating sleep/wake transitions that are wired in this way.
Which of these are associated with waking EEG activity and/or REM sleep?
desynchronized EEG patterns (small amplitude, less visible pattern)
It’s a myth that sleep deprivation is a public health concern. It’s fine to miss a few hours of sleep regularly and can’t possibly cause any problems.
False
What does it mean that sleep is not passive, in terms of what neurons in vIPOA do?
sleep is not passive because some neurons have to keep firing in order to keep you asleep
You can tell whether someone is dreaming from their brain activity.
True
In which stage of sleep does muscle paralysis occur?
REM sleep
Choose all the statements about orexin/orexinergic neurons that are correct:
High levels of orexin secretion are associated with alertness/wakefulness (as opposed to sleep)
Orexinergic neurons help you stay awake for longer periods of time, rather than flipping between sleep and wakefulness.
Orexinergic neurons respond differently if you’re hungry versus full.
Choose the chemicals or structures that are involved in promoting sleep (when activated, if a structure, or when released, if neurotransmitter/neuromodulator):
vIPOA (ventrolateral preoptic area)
Adenosine
Emotion
Emotions are increases or decreases in physiological activity that are accompanied by feelings that are characteristic of the emotion
three systems involved in emotional response:
1. behavioral – motor system produces appropriate behavior
Aka part that other people can see
2. autonomic – sympathetic nervous system prepares body for action
Related to fight or flight response
3. hormonal – secretion of hormones (NE, epinephrine, cortisol) helps autonomic nervous system
Anger is associated with elevated heart rate + elevated temperature
Sadness is associated with elevated heart rate with no change in temperature
Amygdala
Coordinates emotional responses
It does this by influencing the activity of many other brain regions that are responsible for different components of emotional responses
influences activity of anterior cingulate cortex, hypothalamus, septal nuclei, insular cortex, basal ganglia (among others)
Amygdala is known to be activated by stimuli that have strong emotional content, such as threatnening stimuli, frustrating, fear
threatening, frustrating, fear-inducing stimuli → increased activity
If the amygdala is electrically stimulated, we see fear, anger, or a stress response
stimulation → fear, stress responses, anger
Amygdala has 3 divisions:
Central nucleus
Corticomedial nucleus
Basolateral nucleus
Central nucleus
The most important part for emotional responses to aversive stimuli
defensive behaviors and predation
outputs of central nucleus and associated emotional responses
Amydala can coordinate the startle response
For example, someone coming up to you and going “boo,” causing you to jump
Accomplishes multiple component of emotional responses by projecting to different locations of the brain and sending information to them
Conditioned emotional response
lateral nucleus of amygdala
Example with conditioning with a rat; rat being in a box with electrocution. When the first rat is electrocuted in box 1 it’s scared, but in box 2 its not. When the second rat is electrocuted + bell ringing in box 1, it’s scared. In box 2, upon hearing the bell ringing, it’s scared.
The learning through this sort of conditioning is learned through the lateral nucleus of the amygdala
This part of the amygdala communicates with the central nucleus
Amygdala lesions/damange
When damaged, there’s fewer:
fear responses
conditioned emotional responses
Effects of emotion on memory
Reduced sympathetic/autonomic nervous system activation
Fewer stress hormones
Less of long term consequences of stress hormones, like ulcers
Ventromedial PFC (vmPFC) orbitofrontal cortex
Part of the brain responsible for adulting
Everytime you wanted to say smth mean, but bit your tongue or did your work/responsibilities instead of playing around, it’s bc of this part of the brain
We see developmental changes in this region into the early 20s at least and potentially even longer
It has a big role on impulse control
Has a role in regulating emotions + helps produce the appropriate emotional behavioral responses
It communicates with the amygdala, ofc
It sends axons to the amygdala and the amygdala sends axons back. This is called being reciprocally connected
Plays an important role in the extinction of conditioned fear responses
Extinction of conditioned emotional responses
Going back to the rat: the conditioned response can be removed! Hip hip hooray for the rat!
If the rat is kept in the same room it was afraid of (the safe one) with the bell ringing, the rat will stop being afraid
extinction = inhibition (not erasure) of previous emotional response
inhibition courtesy of vmPFC
Context-specific
Emotional memories are very easy to learn + it’s very easy fo these memories to be retained for a very long time
When we stop acting like those fear memories want us to act, it’s not bc we forgot the fear memories, it’s bc we learned something different that sort of overrides them when we can manage to get the ventromedial prefrontal cortex engage. That original fear learning is not gone.
vmPFC lesions
People with ventromedial prefrontal cortex damage like Phineas Gage have trouble regulating their emotions
This difficulty in regulating how they feel seems to be linked with their difficulties and behaving appropriately
People report emotional instability, irritability, low tolerance for frustration, etc.
This is associated with those overt behaviorial responses that are not so appropriate
People with this dmg also make bad decisions
They KNOW what the right decision IS, but tend to still make bad decisions for themselves
In summary;
emotional dysregulation
poor impulse control
poor decision making
Phineas Gage
responsible, hardworking → irresponsible
mild-mannered → couldn’t control temper, swore, drank a lot
Anterior cingulate cortex (ACC)
Mediates people’s experience of pain; not the sensation of pain, but the experience of it
ACC mediates a lot of emotional experience in general
It collects feedback from our behavioral responses + our autonomic and hormonal responses. This feedback forms our feelings of emotion.
Involved in our emotional responses to pain and our anticipation of pain, including pain that’s directed at others potential pain
ACC differs among individuals; for example, one guy can have it larger and the other smaller
Research suggests that people who have a larger ACC may also have higher levels of the personality trait harm avoidance, meaning they might go out of their way to avoid experiencing any sort of painful or difficult
ACC in general: attention, cognitive processing, emotion, consciousness(??)
Aggression
In animals, there are 2 types of aggressive behaviors: defensive attacks and predatory behavior.
Attack behaviors involve a high level of sympathetic autonomic nervous system activity, predatory behaviors do not. Predatory behaviors are like business as usual
amygdala+hypothalamus control activity of brain stem circuits associated with species-typical behaviors
aggressive behaviors via PAG
stimulate PAG → defensive attack, predation
amygdala+hypothalamus also involved in human aggression
PFC restrains
reduced PFC function in impulsive murderers; antisocial personality disorder…
testosterone & aggression
• CONTEXT MATTERS.
• sometimes,
↑testosterone → ↑aggression.
• sometimes,
↑testosterone → ↓aggression.
• sometimes,
↑testosterone → ↓aggression in some and
↑testosterone → ↓aggression in others
Basically, testosterone in itself does not cause aggression. It CAN cause aggression in some people, but not all.
If you give someone testosterone in a social situation where aggressive behavior will help them to achieve higher status, then they may act more aggressive.
If you give someone testosterone in in a social situation where they can gain higher social status by acting prosocially, or not aggressively, then giving them testosterone makes them act LESS aggressively and more socially
Testosterone is more about achieving higher social status rather than acting aggressively
We cant say that the hormone caused the result, because sometimes the result causes the hormone (to be produced)
Serotonin & risky behavior
Serotonin does inhibit aggressive behavior in some cases
Decreasing serotonin makes aggressive attacks more likely
↑5HT → ↓aggression
↑5HT → ↓risky behavior
many 5HT projections to vmPFC, PFC in general
Serotonin inhibits risky behavior in general
“One thing that's clear, though, is you're not going to get anywhere if you think there's going to be the brain region or the hormone or the gene or the childhood experience or the evolutionary mechanism that explains everything. Instead, every bit of behavior has multiple levels of causality.” - Robert Sapolsky
Communicating emotions
how?
postural changes
facial expressions
non-verbal sounds
why?
what are they going to do next????
“inferring mental state”
Basic emotions
anger, fear, sadness, disgust, surprise, happiness
easily & quickly identified from an individual’s face alone
automatic occurrence, involuntary, rapid onset & typically rapid dissipation of emotion itself & accompanying autonomic system & endocrine activity
Cross-cultural
Complex / ‘social“ emotions
e.g. grief, regret jealousy, awe, pride, shame, guilt, embarassment
more variable across cultures
slower, more difficult, to recognize
sometimes need more information than face, like posture
lateralization & emotion
visual areas (including fusiform gyrus – faces), and auditory areas (including speech processing)
right hemisphere is dominant for recognition and expression of emotion
right hemisphere lesions → impaired visual and auditory recognition of emotion
right hemisphere lesions → deficit in facial and voice expression
left half of face more expressive than right
amygdala & emotion recognition
amygdala lesion
↓ emotion recognition from faces & bodies (posture), especially fear
preserved emotion recognition from tone of voice
why?
affective blindsight - refers to a form of blindness that’s relevant for emotions
For example, they cannot see the person but they can still tell what emotion they’re feeling
Feeling & perceiving disgust
insula – location of primary gustatory cortex (taste)
Insula is involved in taste, but a lot of other things as well such as interoception
Interoception is a word for how we’re feeling
It combines information about gut-feelings which includes feelings from your visceral organs as well as information about proprioception, temperature, etc
Anterior insula also plays a role in disgust. This area that perceives and feels disgust is near the primary gustatory cortex
When someone sees someone else experiencing disgust, they also recruit this anterior insula
This area of the brain comes into play when;
We taste something bad
We see something that makes us feel disgusted
We see someone else who’s making facial expressions as though they were disgusted
Expressing emotions
Expressing emotions is automatic and involuntary
It’s hard to fake expressing emotions, and no one is really good at it
Yes, people who can fake emotions exist BUT it’s rare. Not a lotta people have it
Method acting exists bc people arent that good at faking emotions they’re not currently feeling
Smiling with the mouth can be done, but smiling with the eyes is difficult, near impossible to do. The only way to smile w the eyes is to actually smile
Smiling only with the mouth and not the eyes is called a social smile
Volitional facial paresis
People have damage to the primary motor cortex aka M1 or it’s outputs or the axons that project down to the motor neurons in the spinal cord
When people suffer from this type of damage, they cannot move their facial muscles voluntarily. So even if you tell them to make a facial emotion, they’re unable to do so.
Emotional facial paresis
Damage to the insula, white matter fibers in the frontal lobes, or damage to parts of the thalamus.
People can voluntarily move their muscles, but can’t express genuine emotion with same muscles
Feedback from emotional expressions
People that are told to make a face that is associated with a certain emotion [eg telling them to scrunch up their eyebrows, frown] causes them to actually have the physiological changes that are associated with said emotion.
For example, angry. This emotion is associated with scrunching up your eyebrows, your nose, frowning and when someone is angry, their hearrate increases and their temperature as well. When told to ‘scrunch your eyebrows,’ people would experience the physiological symptoms of anger without them feeling that emotion.
People have also reported that after making the face, they’d actually start feeling the emotion afterward
Getting botox to reduce your wrinkles can also influence your experience of emotions as well
People who get botox in the corrugator muscle report less negative moods
Reduced in amygdala activity
botox → ↓frown → ↓ negative emotions, ↓ amygdala activity
Feeling your feelings
James-Lange theory:
sensory feedback → feelings
Common sense theory; ‘im shaking because im afraid.’
James-lange theory; ‘im afraid because im shaking.’