Lysosomes are used to help rid the cell of waste. Vacuoles, on the other hand, are used for storage.
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Lysosomes
Lysosomes are important parts of the cell, even though they can sometimes be forgotten. Theyareinchargeofcleaningupthecellandgettingridofwaste. Lysosomes are filled with enzymes. Enzymesareproteinsthathelpspeedupchemicalreactionsincells. In lysosomes, enzymes speed up the breakdown of waste products within the lysosome.
The enzymes in a lysosome are partofthedigestivepartofacell, so the lysosomekeepstheseenzymescontainedina<strong>membranesack</strong>, which prevents the digestive enzymes from digesting the whole cell. Thesedigestiveenzymescanbreakdownorganiccompounds,lipids,proteins,andcarbohydrates, which are all relatively large molecules. The enzymes break down these large molecules into smaller molecules known as monomers (the root mono means “one”).
  * For example, proteins might be broken down into their individual amino acids.
When these molecules are broken down, thecellkeepssomepartsinthecellforreuse. The parts that cannot be used are sent out of the cell. Cellsareverysmallanddonothavealotofspace. Thus, anything not being used by the cell leaves because the cell doesn’t have enough space for broken things to remain.
  * For example, if an organelle no longer functions, the lysosome is responsible for breaking it down and removing it from the cell.
Lysosomes can alsodefendthecell by breaking down the cell wall of bacterial invaders.
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Vacuoles
<strong>Vacuoles</strong>arestoragefacilitiesinthecell. Vacuoles are most commonly foundinplantcells. Plants cannot move around to get the things they need, like water and nutrients. So, when something useful becomes available to a plant, the plant likes to save it for when it is needed.
In fact, plants have a largevacuole (even larger than the nucleus) known as a <strong>centralvacuole</strong>thatisusedtostorewater,salts,proteins,andcarbohydrates. If a plant releases poison or toxins of some sort to deter predators, it will store that toxin in the central vacuole and if it has some sort of nectar to attract pollinators, the nectar is also stored in the central vacuole.
Plants rely on something called turgor pressure to stand. Turgorpressureincreaseswhenplantcellshavelotsofwaterinthem, which is stored in the central vacuole.
If a plant cell does not have enough water, it will lose turgor pressure and wilt.
Protists, single-celled organisms, can also have a vacuole. Their vacuole is called a contractile vacuole. Most protists live in freshwater, which means that water is always wanting to come into the cell, so thecontractilevacuoleactsasapumpfortheprotistandpumpsoutthefreshwatersothecelldoesn’tfillwithfreshwaterandburst.