3.9 PCR

Polymerase chain reaction (PCR) - technique that allows scientists to make millions of copies of desired gene fragment in hours

PCR allows scientists to perform genetic testing on incredibly tiny amounts of tissue - even a single cell

PCR can even be used on tissue that has been degraded by environment

Used in medicine, genetics, biotechnology and forensics

Step 1: Denaturation

DNA sample is heated to 94°C - 96°C MUST KNOW TEMPS.

Heating breaks hydrogen bonds that hold double stranded DNA together - result is complimentary single strands

Step 2: DNA primers added (annealing). Cooled to 50 ̊C - 65 ̊C

2 different primers (forward and reverse) - chosen to be complimentary to opposite ends of target region being copied

STEP 3: Taq DNA Polymerase added (Elongation). Heated to 72 ̊C

Taq DNA polymerase comes from bacterium Thermus aquaticus, which is found in hot springs - enzyme does not denature at 72 ̊ C

Taq DNA polymerase joins at primers and moves along strands adding complimentary base pairs as it goes - result is two incomplete copies of DNA, each containing target region

Cycle 1 Complete

STEP 4: Repeat steps 1 - 3

After cycle 2 result is four incomplete copies of DNA, each containing target region

Taq DNA polymerase added; heat to 72 ̊C

Cycle 2

Step 5: Repeat

After the 3rd Cycle, there are a total of 8 DNA copies, 2 of which are target fragments

Cycle 3

Table 1: DNA Replication and PCR

DNA Replication

Polymerase Chain Reaction (PCR)

Double-stranded DNA Separates

Topoisomerase

DNA helicase

High Temperature

(94 ̊C - 96 ̊C)

Primers Added to Single Strands

RNA Primers

DNA Primers

(forward and reverse)

Complimentary Strand Synthesized

DNA polymerase III copies entire DNA strand

Taq DNA polymerase copies DNA fragments

Result

Copy of entire DNA molecule

After 30 cycles, over a billion identical DNA fragments