Archenteron: The precursor to the gut that forms during gastrulation.
Notochord: A rod-like structure in the embryo that gives rise to the spine.
Somites: Segmented blocks of mesoderm that will develop into vertebrae and muscles.
Epiblast: The layer of the blastoderm that contributes to the formation of the embryo.
Hypoblast: The layer of the blastoderm that contributes to the extraembryonic structures or yolk.
Henson’s Node: The structure at the anterior end of the primitive streak in avian embryos, analogous to the organizer in amphibians.
Primitive Streak: A structure that forms during the early stages of embryonic development and establishes the A/P axis.
Wnt Pathway: A signaling pathway involved in regulating cell-to-cell interactions during development.
Organogenesis: The formation of organs from the germ layers during development.
Spemann Organizer: A group of cells that directs the development of surrounding tissues in amphibian embryos.
Xenopus is an important model organism for developmental biology.
Wnt/β-catenin pathway:
Wnt-11: Localized to the dorsal side, crucial for specifying the future dorsal axis.
Activates β-catenin which stabilizes and promotes expression of target genes involved in dorsal structures formation.
Nodal:
Secreted from the endoderm; important for mesoderm induction and establishing the A/P and D/V axes.
Localization occurs predominantly in the vegetal hemisphere during early cleavage.
Vg-1:
Located in the vegetal pole, a member of the TGF-β superfamily promoting mesoderm formation.
VegT:
a T-box transcription factor, endoderm and mesoderm specification
Fertilization and Cleavage:
Sperm enters egg in the animal region.
The fertilized egg completes meiosis and cortical rotation begins after fertilization (60 minutes post-fertilization).
Cleavage Stages:
1st Cleavage: Occurs along the animal-vegetal (A/V) axis
2nd Cleavage: Also along A/V axis, perpendicular to the first
3rd Cleavage: Is equatorial
The cleavage produces 4 small animal and 4 large vegetal blastomeres.
After 12 synchronous cleavages, a blastula with several thousand cells and a blastocoel forms.
Initiation:
Begins opposite sperm entry; formation of the blastopore marks the future dorsal side.
Cell Movement:
Involution of mesoderm and endoderm cells occurs, converging along the A/P axis under ectoderm.
Ectodermal cells spread through epiboly to cover the embryo.
Archenteron Formation:
Archenteron is the cavity formed between mesoderm and dorsal endoderm, which will eventually become the gut cavity.
Chordate Development:
Characterized by interactions between mesoderm and ectoderm.
Anterior dorsal mesoderm develops into the notochord and somites.
Notochord induces overlying ectodermal cells to form the neural plate, neural folds, and eventually a neural tube.
Developmental Features:
The brain divides into fore, mid, and hindbrain in the anterior region; eye and ear placodes form; three branchial arches develop.
Distinct somites align along the A/P axis and the tail forms last. Organogenesis commences in this phase.
Cortical Rotation:
Triggered by sperm entry, causing rearrangement of the cortex.
Causes reorganization of microtubules, plus-end away from site of sperm entry. (mt reorganization is important for cortical rotation which is important for DORSAL STRUCTURE FORMATION)
Causes relocation of critical vegetally localized maternal mRNAs and proteins to a site directly opposite to sperm entry.
Maternal mRNA Localization:
Key maternal mRNAs reposition opposite sperm entry, activating Wnt/β-catenin signaling in 2 of 4 cells, defining the future dorsal side.
Experiment Details:
Division of the embryo into dorsal and ventral halves at the 4-cell stage shows normal development in the dorsal half and abnormal development in the ventral half, underscoring the importance of dorsal determinants.
Shows slight mosaic development
Wnt-11 mRNA:
Present in both dorsal and ventral cells, but signaling is activated solely in dorsal cells.
β-catenin stabilizes and enters nuclei of cells, thus defining organizing centers.
Combination of ß-catenin and VegT activity defines where the organizing centers will arise
Key Cell Types:
NKC cells from the dorsal-vegetal region at the 32-cell stage generate endoderm.
transplantaion of NKC into another embryo forms a double embryo with a duplicated axis (just like spemanns organizer)
That shows sign of regulative devlopment
Spemann’s Organizer cells from the equatorial region during early gastrula form the notochord
Both are critical for anterior-dorsal fate development.
Ectoderm Development: Forms epidermis, sweat glands, hair, and nervous system (brain & spinal cord).
Ectodermin and Foxl1e
Mesoderm: Gives rise to notochord, somites (muscles), and structures like the heart, kidneys.
Endoderm: Becomes gut, lung, liver, and pancreas.
VegT (endoderm patterned by vegetal cells - like how vegT is vegetal and forms ENDODERM and mesoderm)
Induction Mechanism:
Animal cells in lab made to touch vegetal tissue can induce mesoderm formation (when it was cut out before the expirement)
Shows that there is a mesoderm inducing signal (filter shows that it is a small, diffusible molecule)
Mesoderm induction occurs at the blastula stage
D/V: if you do the same expirement but use more ventral side cells, the mesoderm that forms will become epidermis/blood and if more dorsal side cells are used then mesoderm wil become muscle/neural tube
but its a gradient so if you combine some v and d cells - the d side will take over (making muscle cells instead of blood)
Signal #1: General mesoderm inducer from the vegetal region.
Signal #2: Signals from ventral mesoderm subdivides regional fates (e.g., blood, muscle).
Signal #3: Signals from Spemann’s organizer limit ventral signals, aiding somite specification.
Signals from the organizer are vital for regulating and specifying tissue fates within the embryo.
Overlap of VegT and Wnt activity results in high levels of Nodal, and specification of Spemann organizer.
Nodal = xnr protiens that help define the spemanns organizer
nodal and vegT both induce mesoderm - if vegt is gone then nodal is reduced and no mesoderm forms
mesoderm formation can be rescued by xnr injection though!
Ventral Signals
BMP4
Xwnt8
Dorsal Signals
Inhibitors of ventral signals are here (inhibits BMP4 and Xwnt8) so theres low activity of them in the dorsal side
Inhibitors:
Of BMP4: Noggin, Chordin
Of Xwnt8: Frzb
Wnt before gastrulation: highest dorsally
Wnt after gastrulation: highest posteriorly
Xenopus gastrula epidermal cells are determined
The fate of epidermal cells is dependent on their location
transplanting epidermis tissue in neural area will make epidermis tissue form in the brain
BMP4 is key inhibitor of neural tissue (remember from N172!)
washing away BMP4 in ectodermal cells will allow brain tissue to form
also if you treat those cells with noggin (inhibits BMP4)
Four families of secreted signaling molecules:
Wnts • fibroblast growth factors (FGFs) • BMPs • Nodals
A/P Neural Patterning
anterior mesoderm induces head and brain.
posterior mesoderm induces trunk & spinal cord.
Body Plan Steps
Sperm entry causes cortical rotation which defines dorsal fates
Mesoderm patterning (ventral = blood // dorsal = muscle) and gastrulation movements (involution/epiboly) determine the A/P axis
Vertebrate embryos share a key developmental hallmark as chordates = a notochord
Which of the following is unique to Xenopus (or other amphibians) when compared to mammalian development?
a. Early development occurs in utero with a placenta
b. Embryos undergo discoidal cleavage on a large yolk
c. External fertilization and external embryonic development in water
d. Development proceeds from a blastocyst stage with an inner cell mass
Answer: C
Which of the following most accurately describes a relative weakness of Xenopus as a model system?
a. It offers a short life cycle facilitating quick breeding and genetic analysis
b. It has a relatively long generation time making multi-generational genetic studies challenging
c. It cannot be used to study early embryonic development because fertilization is in utero
d. No techniques exist for gene knockdown in Xenopus embryos
Answer: B
Which of the following is a major advantage of using Xenopus for developmental studies?
a. Extremely short generation time allowing for rapid genetic screening
b. Large externally fertilized eggs that are easy to manipulate and inject
c. Fully transparent embryos for live imaging of internal tissues
d. Readily available embryonic stem cell lines for cell culture
Answer: B
If microtubule reorganization in a Xenopus zygote is blocked, which outcome is most
likely?
a. An embryo with duplicated dorsal axes (two heads)
b. A ventralized embryo lacking normal dorsal structures
c. No effect, since dorsal fate is determined by the blastocoel location
d. Overproduction of neural tissue in the vegetal region
Answer: B
Epiblast = blastula
Primitive Streak (PS) = blastopore in gastrulation
No distinct region to form future germ layers
instead germ layers determined by by cell MOVEMENT
Incomplete cleavage and garm specification happens very late
INCOMPLETE cleavage
Blastoderm/blastodisc is a disc of cells, that sits on top of the yolk
Dorsal side forms away from yolk and ventral side forms next to it (you vent to people you’re close to!)
Epiblast: embryo proper
Hypoblast: extra-embryonic structures (e.g., yolk sac).
Koller’s sickle: crescent shaped ridge at boundary of area pellucida and area opaca; first sign of A/P polarity
PMZ (posterior marginal zone): epiblast cells that lie adjacent to K’s sickle, primitive streak (gastrulation) is initiated at this location.
Primitive streak initially a thickening that becomes a furrow (dip or indentation) ; extends half-way up the area pellucida.
PMZ marks posterior of embryo, anterior is where streak ends.
Cell Movement:
As PS moves forward, epiblast cells move into the furrow (ingression), and then they spread out in a loose mesenchymal layer (cells that break the adherin and integrin bonds to move freely)
Cells that move inside become the mesoderm / endoderm and cells that dont go into furrow become ectoderm
Henson’s Node:
Forms the neural structures (like how Spemanns Organizer does)
Formed by cells at the anterior most location of PS
Once node is formed = PS REGRESSES (GOES BACKWARDS)
Some HN cells move anteriorly under the epiblast = forms the head process (like the notochord)
As PS regresses to the posterior side, notochord keeps forming (behind the PS // anterior to it)
Notochord Formation:
Linked with somitogenesis and neural tube induction
Mesechymal cells on both sides of notochord = turn into somites and mesoderm
Notochord induces epiblast cells above it to form neural tube
Head fold forms anteriorly, trapping the gut (similar fold in tail happens and then ventral closure happens)
Extra Embryonic Structures Form
Form from hypoblast
Stuctures:
Amnion: provides mechanical protection (You need protection to get into Omnia)
Allantois: site of gas exchange (O2-CO2) and recieves excretory products (Alan says FINALLY I can breathe)
Chorion: surrounds whole embryo and lies just beneath chick egg shell (Orion is an ALL AROUND great song - great chords)
Initially the blastodisc is a perfect circle = radially symetric (like starfish)
After egg is laid, Kollers sickle and PMZ form at one location at the edge of disc
Dependent on rotational forces (UNLIKE XENOPUS THERES NO DISTRIBUTION OF MATERNAL DETERMINANTS - LiKE THE DORSAL DETERMINANTS)
Instead of dorsal determinants - the rotational forces determine the axis
In the oviduct (fallopian tube), egg rotates every 6 minutes
causes blastoderm (the wall of cells - not refering to whole disc/ball) to tip in direction of rotation
THATS WHAT SPECIFIES A/P AXIS
Upper part forms the future posterior side of blastoderm
KS and PMZ formed there and PS starts there
PMZ cells (like NKC cells) induce another PS (another AP axis) when transplanted into another embryo
only ONE axis develops further though. the more advanced streak inhibits the other (so there wont be two heads like in the xenopus expirement)
Nodal is critical for the formation of the PS AND Hensons Node (just like how its important for the NKC and Spemanns Organizer on the dorsal side)
Vg-1 (TGF-b family) and Wnt8c:
expressed in PMZ which induces Nodal in the future primitive streak
Cereberus:
Secreted by hypoblast, INHIBITS NODAL SIGNALING.
PS can only go forward when hypoblast is displaced from PMZ (cause then nodal wont be inhibited)
Hypoblast displaced by endoblast instead which finally allows nodal to help FGF form the PS)
Nodal:
Critical for PS and Hensons Node
FGF (Fibroblast Growth Factor):
Kollers sickle cells secrete this (KS also promotes expression of nodal in PS)
Fertilization and cleavage occur in the oviduct. First cleavage at 24 hours, then every 12 hours
8 cell stage: cells compact to form a solid ball = compacted morula
Two Cell Types
Trophectoderm: forms JUST extra embryonic tissues, aka placenta (like hypoblast)
Inner Cell Mass (ICM): forms embryo (like endoblast) and some extra embryonic tissues
TO MAKE TRANSGENIC MICE, transfer gene in the ICM not the trophectoderm - thats where the actual embryo will be
Day 6 (E6): starts with appearance of PS at one side of the cup (thats the future posterior side) - then it moves towards the bottom of the cup (future anterior side)
Process:
Epiblast cells move into PS between the ecto and endo to form the mesoderm
A node forms at the anterior tip of PS (same as Hensons Node) and that makes the PS start to regress
Mesoderm cells that are anterior (behind the PS) to the PS form the notochord (same as chick)
D/V Sides
Dorsal = inner side of cup (rats! the d is inside when it came!)
Ventral = outer side of cup
Gut
endoderm forms the gut
lateral surfaces come together to enclose the gut
Day 8: (8 days after fertilization) neural folds begin to form at anterior dorsal side
Day 9: turning happens to form a more recognizable mouse embryo
formation of extra embryonic stuctures (placenta) are essential for mammal embryonic development
No clear sign of polarity and no evidence of localized maternal factors in mammal egg
No yolk in eggs
Zygotic gene transcription occurs at 1 cell stage
Seperation of embryos at the 2 cell stage (like in previous expirements) result in two twins! (humans and mice)
Regulative development
Cell fate determined by POSITION OF CELLS
if outer cell is pushed inside then that cell becomes part of ICM (not trophectoderm)
determination of ICM vs troph. happens after 32-cell stage
Cdx2 expressed in troph cells
Oct4 (pluripotency transcription factor) expressed in ICM cells
Nanog expressed in ICM
Gata6 expressed in primitive endoderm
DVE: Distal Visceral Endoderm specified
expresses ANTAGONISTS of nodal, wnt, and BMP (lefty-1)
EEE
releases inhibiting signal (BMP4) that restrict nodal to the most distal cells
nodal signals released from epiblast determine the anterior side and they push the vicseral endoderm to become the AVE
if there was no BMP4 - there would be no anterior specification
AVE (like chick hypoblast)
formed by cells induced by nodal signaling from epiblast
aka formed by induction by Nodals from the epiblast and repression by BMP4 from the EEE.
expands to one side to form future anterior side
secretes nodal inhibitors and inhibits PS on that side
so it forms on the opposite side (to form posterior side)
Somites
blocks of mesoderm derived from the paraxial mesoderm on
either side of notochord
formed in A → P order
Give rise to
bones / cartilage
head / neck muscles
dermis of skin
Theres a fixed number of them in each organism
Gradients
Opposing gradients of fibroblast growth factor (FGF)
+ Wnt and retinoic acid (RA) maintain the Stem Zone
Formation in Chick Embryos
Somitogenic stem cells form around the Hensens node.
Pre-somitic mesoderm (PSM): unsegmented mesoderm between the regressing node and the last formed somite.
As node regresses, cells at the anterior end of PSM start forming somites and differentiate into distinct structures based on their A/P position
Rotation
180 degree rotation does not alter OG timing and order of somites (even though orientation is reversed)
Clock and wave front model
Wavefront of determination moving in from A to P corresponds to a threshold level of FGF/Wnt signaling.
A clock - periodic or oscillatory gene expression associated with Wnt, Notch and FGF signaling moving from P to A.
The distance moved by the wavefront per oscillation of the clock marks the region/length of PSM that will form a somite.
Period of oscillation = time it takes one pair of somites to form.
Gene Expression
c-hairy1 expression oscillates every 90 minutes in chick embryos, ~ the time it takes one pair of somites to form
Wave of c-hairy1 expression is shown during formation of somites 15-17
Notch and Delta signaling
Notch/Delta signaling involved in delimiting boundaries between somites.
Lunatic fringe – glycosyl transferase that potentiates Notch/Delta signaling and shows cyclic expression.
Mice deficient in Notch/Delta pathway – somites either not formed or irregularly spaced; similar rib abnormalities
Lunatic fringe mutations in humans cause spondylocostal dysostosis – short stature, severe spinal patterning defects.
Hox gene expression and axial patterning
Mesodermal cells express Hox genes from early gastrulation.
Neural tube is also patterned through Hox gene expression.
Posterior dominance encountered in vertebrates as well.
Redundancy; multiple HOX clusters present in vertebrates
Homeotic transformations in mice
Homeotic mutant phenotypes result from loss or gain of Hox gene expression.
Loss of gene function leads to cells assuming a more anterior value for example, Hoxc8 mutant mice have extra ribs
Origin and patterning of Neural Crest cells
Neuronal:
Sympathetic and parasympathetic NS
Glial cells
Non-Neuronal:
Melanocytes
Adrenaline producing cells of the adrenal gland
Bone, cartilage and muscles of the face
Transplantation experiments suggest that NCCs acquire regional identity prior to migration based on the Hox gene expression at site of NCC origin
Other experiments suggest that NC cells have some plasticity and can sometimes change their fate based on local signaling at destination as well.
Disruption of NC Migration
Cleft palate
Treacher Collins syndrome and other craniofacial defects
Hirschsprung Disease – defects in Notch and Hh pathways; failure of
innervation in hindgut
Waardenburg Syndrome – piebaldism, heterochromia; rare autosomal
dominant disorder of melanocyte development
Neurula stage embryo
By neurula stage, a clear body plan has been established & regionalized.
Limb and organ (for example eyes, heart) forming regions have been
specified; but no differentiation or elaboration of cell fates has occurred.
Cells within these areas retain considerable capacity for regulation
Simple development
Rapid development time (15 hrs to hatch - 50 hrs to adult stage)
Easy to breed / self fertilizing
Transparent embryos (can see mutants easily)
Small genome size (3% of humans - but still a lot of genes - 16k)
Can track exact cell lineage (558 cells at hatching and 959 in the adult after 131 cells have died by apoptosis)
Cleavage
Embryogenesis
Hatching
after hatching the larvae are very similar to adults, they just need to undergo 4 larvae molts and thats it!
First Division: gives one LARGE anterior AB cell and one small P1 cell
P1 gives rise to P2 cells and EMS (endo and meso) cells
P1 → P2 → P3 = makes germ cells
AB - P1
P1 → EMS and P2
EMS → MS and E cells // P2 → P3 and C
P3 → P4 (germ cells) and D
AB → ABa and ABb
2nd: AB cell divides to form ABa (anterior: neurons, epidermis + pharynx meso) and ABp (posterior: neurons, epidermis, and specialized cells)
Fate map is FIXED and invariant (never changes)
Therefore, early c eligans devlopment is MOSAIC
So, body axes depend on asymmetric cell division and inheritance of cytoplasmic factors, not cell-cell interaction (regulative)
Gastrulation starts at 28-cell stage and MS cells become muscle and E cells invaginate to become the endoderm (gut) surrounded by meso and ecto
MS and E cells come from EMS (which came from P1)
Zygotic gene expression starts at 4-cell stage!!!
Determined by assemetrical cell division
Sperm entry controls first cleavage and determines the future posterior end
Sperm brings in a centriole that become a microtubule organizing center (MTOC)
Local cell-cell interactions regulate the determination the D/V axis
example: If you experimentally switch the positions of ABa and ABp you still get a normal worm - P1 progeny are also altered; the position of the EMS daughter cell with respect to the AB cells is reversed. This results in reversal of D/V axis.
The cell next to P2 will become ABp – in the absence of P2 signaling, the cell fate becomes ABa
Glp-1 and apx-1 genes are involved in cell-cell interactions that establish the A/P axis
ABa and ABp both express Glp1 (receptor) and P2 expresses Apx-1 (ligand) on the surface
Apx1 and Glp1 interact with eachother in the adjacent cell - this causes the descendant cells from ABa and ABp to respond differently to signals from the MS cell
Mom and Pop Genes
Mom: More mesoderm
formed when endoderm induction fails
Pop: Posterior pharynx defect
extra gut causes MS cells to adopt E like fate
absence of pop gene makes EMS daughter cells act like they get Wnt signal cause its no longer being repressed by pop gene
Hox Genes
specify positional identity on AP axis - and they are colinear except ceh-13 (needed for anterior fates in the embryo)
Mutations result in homeotic transformations (turning one body part into another)
lin-14 and lin-4
lin-14 = transcription factor
lin-4 = expresses microrna which REPRESSES lin-14 expression
Dicer processes lin-4 which binds to RISC to cut up the lin-14 mRNA (gene silencing)
mutaions of lin-14 change the timing of nematode devlopment
lin-14 gain of function and lin-4 loss of function mutants have the same phenotype (cause its the same thing)
Apoptosis Process
Apoptotic death causes cell to shrink, shred DNA and remain enclosed
Cell forms fragments and is degraded by phagocytic cells
Apoptosis Uses
remove excess cells in the c eligans lineage
remove tissue between vertebrate digits
form neural tube and circuits
Apoptosis Regulation
Ced-3 is the executioner caspase that fragments the DNA
Cascade
EGL1 inhibits Ced 9
(to allow apoptosis by activating Ced 3)
Ced 9 inhibits Ced 4
(by binding to Ced 4 it inhibits it)
Ced 4 activates Ced 3
Changing Cell Shape
shape changes are needed for morphogenesis
2 Types
Intracellular Mechanisms
through cytoskeleton (actin, myosin, etc)
Extracellular Mechanisms
cell to cell interactions
cell to substrate interactions
ECM
cells must interact with ECM to change shape
Cadherins (cell to cell bonds - adherens junctions and desmosomes)
they need Ca2 so tissues can dissociate by just removing Ca2
Tissue specific cadherins:
E - epithelial
P - placental
N -neural
They provide specificity
cells expressing more of a certain type of cadherin will aggregate and group together
Integrins (attach cell to basal membrane/ECM)
interact with the ECM (structural, bioactive, have proteoglycans)
Immunoglobulin (cell to cell bonds)
these DONT need Calcium (unlike the cadherins)
Movement
loss of adhesion by breaking cadherin and integrin bonds = mesenchyme state (moving freely)
Bottle Shape Cells - Xenopus
form at blastopore - actin causes this shape through apical constriction
Epiboly = when cells squish down (stretch out) to form a thinner sheet of cells that cover the all of the layers
Convergent Extention / INTERCALATION = when 2 layers of cells in a row converge into 1 row (1 line of cells instead of 2) to form a longer line
happens during amphibian gastrulation
STEM Cells
Give rise to two multipotent progenitor (MPP) cells: GATA1+ & Flt3+
Cell lineages are controlled by transcription factors
GATA1 and PU.1 inhibit each other, thereby defining two lineages
Growth factors are active in diff areas
G-CSF + GM-CSF + IL-3 → neutrophils
M-CSF + GM-CSF + IL-3 → macrophages
Embryonic stem (ES) cells
Mouse ES cells are totipotent
Mouse epiblast stem cells (EpiSCs) are multipotent
Human ES cells are multipotent
All three SC’s express four transcription factors that maintain the undifferentiated state
Somatic cell nuclear transfer (SCNT)
Nuclei of adult and baby xenopus cells into a xenopus EGG with no nucleus results in a tadpole devloping!
can reprogram many cells in many organisms, but is inefficient and often leads to incomplete or mutant development
only efficient in xenopus cells (not sheep, mice, etc)
Cell Transdifferentiation
Human liver cell can transform into muscle cell when its fused with a mouse muscle cell
This is possible in some species but rarely in others
THIS HAPPENS NATURALLY IN NEMATODE DEVELOPMENT
Induced Pluripotent Stem Cells
Oct4, Sox2, Klf4 and c-Myc (these genes can reprogram: Yamanka study)
can help with study anbd replacement of neurons
Review Questions:
Localization of dorsal determinants at the four-cell stage of the Xenopus embryo is an example of …
A. mosaic development
B. regulative development
C. random development
D. preformation
Answer: A
Transplantation of Spemann’s organizer from one early Xenopus gastrula into the ventral region of another early Xenopus gastrula results in …
A. immediate death of the gastrula
B. second head and D/V axis
C. second head and A/P axis
D. second tail and D/V axis
Answer: B