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2.1-10-11 // Cell Structure and Function and Cell Compartmentalization

Structure determines function.

All cells:

  • Are bound by plasma membrane

  • Contains cytosol

  • Contains genetic information

  • Contains ribosomes

Prokaryotes

  • Single celled organisms

  • Domains bacteria and archaea

  • DNA is in nucleoid region (in cytosol, free floating)

  • Generally smaller

Eukaryotes

  • Multicellular organisms

  • Protists, fungi, animals, plants

  • DNA is contained within nucleus

Two classifications: Endomembrane Organelles and Energy Organelles


Compartmentalization in organelles allows for different metabolic reactions to occur in different places (giving them their own membranes to function).

  • Increases surface area

  • Prevents reactions from interfering with each other.

  • A lot of complex reactions are going on at the same time, so this allows for efficiency and to manage specific conditions necessary for certain reactions.

    • Without this, everything would be occurring in the same place at the same time and it would be chaotic.

Unique cell components

Plants:

  • Chloroplasts

  • Central vacuole

    • Animals have vacuoles too, but the central vacuole helps to maintain water balance and rigidity in a plant

  • Cell wall

  • Plasmodesmata

Animals:

  • Lysosomes

  • Centrosomes

  • Flagella

    • sperms

Endomembrane Organelles

Note: Metabolism means to break things down.

Nucleus: Contains chromosomes (genetic info)

  • Enclosed by nuclear envelope

  • Double membrane

    • Contains pores

  • Regulates entry and exit of materials from the cell

Nucleolus: Dense region of the nucleus where ribosomal RNA (rRNA) is synthesized

  • Combined with proteins to form large/small units of ribosomes

  • Subunits exit via nuclear pores to be assembled

  • Ribosomes translate messages found in mRNA

Nucleus, with nucleolus in the middle

Ribosomes: Synthesizes proteins

  • Composed of rRNA and protein

  • Found in cytosol and/or bound to ER or nuclear envelope

    • Proteins produced here generally function within the cytosol (enzymes), free floating

  • Proteins produced in the ER/Nuclear envelope are secreted from the ribosomes

  • Rough ER is the one w/ ribosomes attached

Endoplasmic Reticulum: Network of membranous sacs and tubes; has membranes to help compartmentalize the cell

  • Dots = rough ER (ribosomes), no dots = smooth ER

    • On Rough ER, the ribosomes make the proteins and the ER will transfer them out.

    • Smooth ER contains no ribosomes and instead synthesizes lipids.

Golgi body: Contains flattened membranous sacs called cisternae (are not connected) and vesicles

  • Separates sacs from cytosol

  • Has directionality

    • Cis face

      • Receives proteins from ER

    • Trans face

      • Sends proteins back out into the cytosol post-modification to other locations or back to the membrane

Function: Sorts and sends out proteins to be transported to the lysosomes, plasma membrane, or to be secreted

Lysosome: Membranous sac with hydrolytic enzymes

Function:

  • Hydrolyzes macromolecules in animal cells

  • Authophagy: Lysosomes can recycle their own cell’s organic materials

    • Allows the cell to renew itself

    • EG: Breaking up nucleic acids into nucleotides to be reused

Peroxisomes: Similar to lysosomes, more specific class

  • Membrane bound metabolic compartments

Function:

  • Catalyzes reactions that produce hydrogen peroxide (H₂O₂)

    • __Peroxi__some (peroxide).

Vacuoles: Large vesicles; Pockets used for organizing cellular substances and creating reaction chambers

  • Stem from ER and Golgi, more selective in transport

  • Multipurpose

Types:

  • Food vacuole

    • Formed via cell eating (phagocytosis) and then are digested by lysosomes

  • Contractile vacuole

    • Maintains water levels

  • Central vacuole

    • Only in plants

Energy organelles

Mitochondrion: Site of cellular respiration

Structure of double membrane:

  • Outer is smooth

  • Inner has folds called cristae

    • Divides mitochondria into two internal compartments and increases surface area

    • Intermembrane: Space between inner/outer

    • Mitochondrial matrix: Enclosed in inner membrane

      • Location where Krebs cycle occurs

        • Has enzymes that catalyze ATP

      • Contains mitochondrial DNA and ribosomes

  • More mitochondria = more metabolic activity

    • EG: Cells that move/contract; have to do a lot of work, needs more ATP (muscles)

Chloroplasts: Specialized organelles in photosynthetic organisms

  • Performs photosynthesis

  • Contains chlorophyll (green)

  • Double membrane has:

    • Thylakoids

      • Membranous sacs that can organize into stacks called grana

      • Light dependent reactions

    • Stroma

      • Fluid around thylakoids

      • Location for Calvin cycle.

  • Contains:

    • DNA

    • Ribosomes

    • Enzymes

*both organelles have the same building blocks

Misc.

Cytoskeleton: Network of fibers throughout cytoplasm

  • Gives structural support, especially in animal cells

  • Anchors organelles

  • Not found in all cells

Endosymbiosis Theory:

  • A prokaryote enveloped a eukaryote and instead of consuming it, it remained inside of itself.

  • The prokaryotic cell would provide food molecules and energy.

  • The eukaryotic cell would provide oxygen and a safe region for the eukaryotic cell to exist.

  • Prokaryotic cell eventually lost independent function and evolved into the mitochondria/chloroplasts.

  • They became one functional organism

Evidence: (boils down to the similarities between the types of cells)

  • Both mitochondria and chloroplasts have double membranes

  • Both have ribosomes

  • Circular DNA

  • Can function on their own

  • Similar reproduction methods

2.1-10-11 // Cell Structure and Function and Cell Compartmentalization

Structure determines function.

All cells:

  • Are bound by plasma membrane

  • Contains cytosol

  • Contains genetic information

  • Contains ribosomes

Prokaryotes

  • Single celled organisms

  • Domains bacteria and archaea

  • DNA is in nucleoid region (in cytosol, free floating)

  • Generally smaller

Eukaryotes

  • Multicellular organisms

  • Protists, fungi, animals, plants

  • DNA is contained within nucleus

Two classifications: Endomembrane Organelles and Energy Organelles


Compartmentalization in organelles allows for different metabolic reactions to occur in different places (giving them their own membranes to function).

  • Increases surface area

  • Prevents reactions from interfering with each other.

  • A lot of complex reactions are going on at the same time, so this allows for efficiency and to manage specific conditions necessary for certain reactions.

    • Without this, everything would be occurring in the same place at the same time and it would be chaotic.

Unique cell components

Plants:

  • Chloroplasts

  • Central vacuole

    • Animals have vacuoles too, but the central vacuole helps to maintain water balance and rigidity in a plant

  • Cell wall

  • Plasmodesmata

Animals:

  • Lysosomes

  • Centrosomes

  • Flagella

    • sperms

Endomembrane Organelles

Note: Metabolism means to break things down.

Nucleus: Contains chromosomes (genetic info)

  • Enclosed by nuclear envelope

  • Double membrane

    • Contains pores

  • Regulates entry and exit of materials from the cell

Nucleolus: Dense region of the nucleus where ribosomal RNA (rRNA) is synthesized

  • Combined with proteins to form large/small units of ribosomes

  • Subunits exit via nuclear pores to be assembled

  • Ribosomes translate messages found in mRNA

Nucleus, with nucleolus in the middle

Ribosomes: Synthesizes proteins

  • Composed of rRNA and protein

  • Found in cytosol and/or bound to ER or nuclear envelope

    • Proteins produced here generally function within the cytosol (enzymes), free floating

  • Proteins produced in the ER/Nuclear envelope are secreted from the ribosomes

  • Rough ER is the one w/ ribosomes attached

Endoplasmic Reticulum: Network of membranous sacs and tubes; has membranes to help compartmentalize the cell

  • Dots = rough ER (ribosomes), no dots = smooth ER

    • On Rough ER, the ribosomes make the proteins and the ER will transfer them out.

    • Smooth ER contains no ribosomes and instead synthesizes lipids.

Golgi body: Contains flattened membranous sacs called cisternae (are not connected) and vesicles

  • Separates sacs from cytosol

  • Has directionality

    • Cis face

      • Receives proteins from ER

    • Trans face

      • Sends proteins back out into the cytosol post-modification to other locations or back to the membrane

Function: Sorts and sends out proteins to be transported to the lysosomes, plasma membrane, or to be secreted

Lysosome: Membranous sac with hydrolytic enzymes

Function:

  • Hydrolyzes macromolecules in animal cells

  • Authophagy: Lysosomes can recycle their own cell’s organic materials

    • Allows the cell to renew itself

    • EG: Breaking up nucleic acids into nucleotides to be reused

Peroxisomes: Similar to lysosomes, more specific class

  • Membrane bound metabolic compartments

Function:

  • Catalyzes reactions that produce hydrogen peroxide (H₂O₂)

    • __Peroxi__some (peroxide).

Vacuoles: Large vesicles; Pockets used for organizing cellular substances and creating reaction chambers

  • Stem from ER and Golgi, more selective in transport

  • Multipurpose

Types:

  • Food vacuole

    • Formed via cell eating (phagocytosis) and then are digested by lysosomes

  • Contractile vacuole

    • Maintains water levels

  • Central vacuole

    • Only in plants

Energy organelles

Mitochondrion: Site of cellular respiration

Structure of double membrane:

  • Outer is smooth

  • Inner has folds called cristae

    • Divides mitochondria into two internal compartments and increases surface area

    • Intermembrane: Space between inner/outer

    • Mitochondrial matrix: Enclosed in inner membrane

      • Location where Krebs cycle occurs

        • Has enzymes that catalyze ATP

      • Contains mitochondrial DNA and ribosomes

  • More mitochondria = more metabolic activity

    • EG: Cells that move/contract; have to do a lot of work, needs more ATP (muscles)

Chloroplasts: Specialized organelles in photosynthetic organisms

  • Performs photosynthesis

  • Contains chlorophyll (green)

  • Double membrane has:

    • Thylakoids

      • Membranous sacs that can organize into stacks called grana

      • Light dependent reactions

    • Stroma

      • Fluid around thylakoids

      • Location for Calvin cycle.

  • Contains:

    • DNA

    • Ribosomes

    • Enzymes

*both organelles have the same building blocks

Misc.

Cytoskeleton: Network of fibers throughout cytoplasm

  • Gives structural support, especially in animal cells

  • Anchors organelles

  • Not found in all cells

Endosymbiosis Theory:

  • A prokaryote enveloped a eukaryote and instead of consuming it, it remained inside of itself.

  • The prokaryotic cell would provide food molecules and energy.

  • The eukaryotic cell would provide oxygen and a safe region for the eukaryotic cell to exist.

  • Prokaryotic cell eventually lost independent function and evolved into the mitochondria/chloroplasts.

  • They became one functional organism

Evidence: (boils down to the similarities between the types of cells)

  • Both mitochondria and chloroplasts have double membranes

  • Both have ribosomes

  • Circular DNA

  • Can function on their own

  • Similar reproduction methods

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