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Ch 2: Chemistry of Life pt. 1 

1. Atoms Ions, and Molecules

Living things consist of atoms and different elements

  • atom: the smallest basic unit of matter.

    • everything is made out of atoms.

Atoms and Elements

  • Atoms have protons, neutrons, and electrons.

    • Protons and neutrons form the nucleus in the center

    • Electrons circle outside the nucleus.

    • Protons are charged positively, electrons negatively, and neutrons are neutral.

  • Element: A type of atom that cannot regularly be broken down into a simpler substance.

    • All atoms of an element have a number of protons that never changes.

    • The number of electrons determines the properties of the element.

Compounds

  • Compound: a substance made of atoms of different elements bonded together in a certain ratio.

    • Compounds can be different from the base elements. (Ex. gaseous hydrogen and oxygen make water).

Ions form when atoms gain or lose electrons.

  • Ion: an atom that had gained or lost one or more electrons.

    • Certain atoms are more stable when they lose or gain electrons.

    • Ions have an electrical charge, either positive or negative.

  • Atoms that lose electrons = positively charged ions

  • Atoms that gain electrons = negatively charged ions

  • Electrons are usually gained/lost through moving electrons between atoms.

  • Ionic Bond: A bond that forms through the electrical force between positively and negatively charged ions.

Atoms share pairs of electrons in covalent bonds

  • Some atoms share pairs of electrons between them to be stable.

  • Covalent bond: a bond that forms when atoms share a pair of electrons.

  • Molecule: two or more atoms held together by covalent bonds.

  • Diatomic molecules are molecules that have two of the same type of atom. (Ex. 2 Oxygen as a molecule).

2. Properties of Water

life depends on hydrogen bonds in water.

  • water has unique properties like how it expands when frozen.

Water and Hydrogen Bonds

  • A polar molecule is a molecule that has a region with a slight positive charge and a region with a slight negative charge.

    • Forms when atoms in a molecule have unequal pulls on shared electrons.

  • Water is a polar molecule, with the hydrogen atoms having slight positive charges and the oxygen atom having a slight negative charge.

  • A nonpolar molecule is a molecule that does not have charged regions.

  • Hydrogen bond: An attraction between a slightly positive hydrogen atom and a slightly negative atom.

Properties related to hydrogen bonds

  • Hydrogen bonds give unique properties to water.

    • Water has a high specific heat, which means it takes longer to heat up.

    • Water molecules stick to each other better with cohesion.

    • Water molecules stick to other things better with adhesion.

  • Cohesion: The attraction among molecules of a substance.

  • Adhesion: The attraction among molecules of different substances.

Many compounds dissolve in water.

  • Molecules and ions must dissolve in water to take part in chemical processes in cells.

  • Solution: a mixture of substances that is all the same throughout.

    • Called a homogeneous mixture (the same).

    • Requires two parts, the solvent, and the solute.

  • Solvent: the substance in a solution that dissolves another substance.

  • Solute: a substance in a solution that dissolves in a solvent.

  • A solution’s concentration is the amount of solute dissolved in a certain amount of solvent.

  • Polar substances dissolve more in water than nonpolar substances.

Some Compounds form acids or bases.

  • Acid: a compound that releases a hydrogen ion when it dissolves in water.

  • Bases: compounds that remove H ions from a solution.

  • pH: A scale that measures the acidity of a solution.

    • Scale usually between 0 to 14.

    • 0 is the most acidic and 14 is the most basic.

  • More acid means a higher positive hydrogen ion concentration.

  • Most organisms need a specific pH.

    • Buffers help to regulate pH in organisms.

3. Carbon-Based Molecules

Carbon atoms have unique bonding properties.

  • Carbon atoms are the basis of most moluecules that make up living things.

    • Carbon’s atomic structure gives it special bonding properties so it can bond with many other atoms.

  • Carbon molecules can be straight chains, branched chains, and rings.

  • Monomer: a subunit in a complete molecule.

    • A subunit can be a molecule inside a bigger molecule.

  • Polymer: a large molecule made of many monomers bonded together

    • Large molecules are called macromolecules.

Four main types of carbon-based molecules are found in living things.

Carbohydrates

  • Carbohydrates: molecules made of carbon, hydrogen, and oxygen.

    • Include sugars and starches.

  • Simple sugars are the simplest form of carbohydrates.

    • Simple sugars bond to make larger carbohydrates.

Lipids

  • Lipids: nonpolar molecules that include fats, oils, and cholesterol.

  • Fatty acids: chains of carbon atoms bonded to hydrogen atoms.

    • Lipids contain fatty acids.

  • Lipids contain three fatty acids called triglycerides.

  • Saturated fats have the most hydrogen atoms while unsaturated fats have the least hydrogen atoms.

  • All cell membranes are mostly made of phospholipid, a lipid with a polar head and a nonpolar end.

    • A phospholipid’s polar head contains a phosphate group.

  • Cholesterol is a lipid that is needed in the human body.

Proteins

  • Proteins: A large molecule (polymer) made out of smaller molecules (monomers) called amino acids.

  • Amino acids: molecules that build proteins.

    • Amino acids form covalent bonds called peptide bonds.

    • Through peptide bonds, amino acids form polypeptides.

  • One or more polypeptides form a protein.

  • The sequence of amino acids effect the structure and function of a protein.

    • Proteins can be bent with certain elements (Sulfur and hydrogen)

Nucleic Acids

  • Nucleic Acids: Larger molecules (polymers) that are made out of smaller molecules (monomers) called nucleotides.

    • Nucleic acids store information on how to build proteins.

  • A nucleotide is made of a sugar, a phosphate group, and a molecule with nitrogen in it.

  • Two types of nucleic acids are DNA and RNA.

    • DNA stores the information to build proteins.

    • RNA helps build the proteins.

Ch 2: Chemistry of Life pt. 1 

1. Atoms Ions, and Molecules

Living things consist of atoms and different elements

  • atom: the smallest basic unit of matter.

    • everything is made out of atoms.

Atoms and Elements

  • Atoms have protons, neutrons, and electrons.

    • Protons and neutrons form the nucleus in the center

    • Electrons circle outside the nucleus.

    • Protons are charged positively, electrons negatively, and neutrons are neutral.

  • Element: A type of atom that cannot regularly be broken down into a simpler substance.

    • All atoms of an element have a number of protons that never changes.

    • The number of electrons determines the properties of the element.

Compounds

  • Compound: a substance made of atoms of different elements bonded together in a certain ratio.

    • Compounds can be different from the base elements. (Ex. gaseous hydrogen and oxygen make water).

Ions form when atoms gain or lose electrons.

  • Ion: an atom that had gained or lost one or more electrons.

    • Certain atoms are more stable when they lose or gain electrons.

    • Ions have an electrical charge, either positive or negative.

  • Atoms that lose electrons = positively charged ions

  • Atoms that gain electrons = negatively charged ions

  • Electrons are usually gained/lost through moving electrons between atoms.

  • Ionic Bond: A bond that forms through the electrical force between positively and negatively charged ions.

Atoms share pairs of electrons in covalent bonds

  • Some atoms share pairs of electrons between them to be stable.

  • Covalent bond: a bond that forms when atoms share a pair of electrons.

  • Molecule: two or more atoms held together by covalent bonds.

  • Diatomic molecules are molecules that have two of the same type of atom. (Ex. 2 Oxygen as a molecule).

2. Properties of Water

life depends on hydrogen bonds in water.

  • water has unique properties like how it expands when frozen.

Water and Hydrogen Bonds

  • A polar molecule is a molecule that has a region with a slight positive charge and a region with a slight negative charge.

    • Forms when atoms in a molecule have unequal pulls on shared electrons.

  • Water is a polar molecule, with the hydrogen atoms having slight positive charges and the oxygen atom having a slight negative charge.

  • A nonpolar molecule is a molecule that does not have charged regions.

  • Hydrogen bond: An attraction between a slightly positive hydrogen atom and a slightly negative atom.

Properties related to hydrogen bonds

  • Hydrogen bonds give unique properties to water.

    • Water has a high specific heat, which means it takes longer to heat up.

    • Water molecules stick to each other better with cohesion.

    • Water molecules stick to other things better with adhesion.

  • Cohesion: The attraction among molecules of a substance.

  • Adhesion: The attraction among molecules of different substances.

Many compounds dissolve in water.

  • Molecules and ions must dissolve in water to take part in chemical processes in cells.

  • Solution: a mixture of substances that is all the same throughout.

    • Called a homogeneous mixture (the same).

    • Requires two parts, the solvent, and the solute.

  • Solvent: the substance in a solution that dissolves another substance.

  • Solute: a substance in a solution that dissolves in a solvent.

  • A solution’s concentration is the amount of solute dissolved in a certain amount of solvent.

  • Polar substances dissolve more in water than nonpolar substances.

Some Compounds form acids or bases.

  • Acid: a compound that releases a hydrogen ion when it dissolves in water.

  • Bases: compounds that remove H ions from a solution.

  • pH: A scale that measures the acidity of a solution.

    • Scale usually between 0 to 14.

    • 0 is the most acidic and 14 is the most basic.

  • More acid means a higher positive hydrogen ion concentration.

  • Most organisms need a specific pH.

    • Buffers help to regulate pH in organisms.

3. Carbon-Based Molecules

Carbon atoms have unique bonding properties.

  • Carbon atoms are the basis of most moluecules that make up living things.

    • Carbon’s atomic structure gives it special bonding properties so it can bond with many other atoms.

  • Carbon molecules can be straight chains, branched chains, and rings.

  • Monomer: a subunit in a complete molecule.

    • A subunit can be a molecule inside a bigger molecule.

  • Polymer: a large molecule made of many monomers bonded together

    • Large molecules are called macromolecules.

Four main types of carbon-based molecules are found in living things.

Carbohydrates

  • Carbohydrates: molecules made of carbon, hydrogen, and oxygen.

    • Include sugars and starches.

  • Simple sugars are the simplest form of carbohydrates.

    • Simple sugars bond to make larger carbohydrates.

Lipids

  • Lipids: nonpolar molecules that include fats, oils, and cholesterol.

  • Fatty acids: chains of carbon atoms bonded to hydrogen atoms.

    • Lipids contain fatty acids.

  • Lipids contain three fatty acids called triglycerides.

  • Saturated fats have the most hydrogen atoms while unsaturated fats have the least hydrogen atoms.

  • All cell membranes are mostly made of phospholipid, a lipid with a polar head and a nonpolar end.

    • A phospholipid’s polar head contains a phosphate group.

  • Cholesterol is a lipid that is needed in the human body.

Proteins

  • Proteins: A large molecule (polymer) made out of smaller molecules (monomers) called amino acids.

  • Amino acids: molecules that build proteins.

    • Amino acids form covalent bonds called peptide bonds.

    • Through peptide bonds, amino acids form polypeptides.

  • One or more polypeptides form a protein.

  • The sequence of amino acids effect the structure and function of a protein.

    • Proteins can be bent with certain elements (Sulfur and hydrogen)

Nucleic Acids

  • Nucleic Acids: Larger molecules (polymers) that are made out of smaller molecules (monomers) called nucleotides.

    • Nucleic acids store information on how to build proteins.

  • A nucleotide is made of a sugar, a phosphate group, and a molecule with nitrogen in it.

  • Two types of nucleic acids are DNA and RNA.

    • DNA stores the information to build proteins.

    • RNA helps build the proteins.

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