S

Ch+2-module 2

Chapter 2: Cellular Molecules

Part 1: Basic Chemistry


Matter and Elements

  • Matter: Anything that takes up space and has mass, existing in three states: solids, liquids, or gases.

  • Composed of elements, which are pure substances that cannot be broken down further and possess distinct properties.

  • Each element has:

    • A unique name

    • A 1-2 letter abbreviation known as an atomic symbol.

  • Elements can exist independently or combine to form molecules and compounds.

  • CHNOPS refers to the most common elements in living organisms:

    • C: Carbon

    • H: Hydrogen

    • N: Nitrogen

    • O: Oxygen

    • P: Phosphorus

    • S: Sulfur

  • Some elements are necessary only in trace amounts.


Atomic Structure

  • Elements are made up of atoms, the smallest unit maintaining the properties of the element.

  • Atoms consist of three main subatomic particles:

    • Protons: Positively charged particles.

    • Neutrons: Neutral particles (no charge).

    • Electrons: Negatively charged particles.


Protons

  • Protons determine the identity of an atom.

  • Located in the nucleus of the atom.

  • The total number of protons defines the atomic number, indicated as a subscript next to the atomic symbol.

  • In the periodic table, this number appears above the element symbol.

  • Contributes to atomic mass, with each proton weighing about 1 atomic mass unit.


Neutrons

  • Neutrons are located in the nucleus and also contribute to atomic mass, weighing about 1.

  • Do not affect the atomic identity or chemical properties.

  • Varying numbers of neutrons in the same element result in isotopes.

  • Some isotopes are unstable and emit energy, termed radioactive isotopes.


Electrons

  • Electrons influence an atom's chemical properties.

  • Their arrangement affects bonding and follows the octet rule, where atoms strive for full outer shells.

  • Electrons are arranged in shells/energy levels around the nucleus:

    • The inner shell can hold a maximum of 2 electrons.

    • Subsequent shells can accommodate up to 8 electrons.

  • Electrons fill the inner shells first before additional shells are considered.


The Periodic Table of Elements

  • An ordered display presenting:

    • Each element's symbol

    • Atomic number

    • Atomic mass.

  • Organized in periods (rows) and groups (columns).

  • Elements in the same period share the same number of electron shells.

  • Elements in the same group possess similar outer shell electron configurations, leading to similar chemical reactions.


Atomic Diagrams

  • Create atomic diagrams by:

    • Placing the atomic symbol in the center as the nucleus.

    • Adding the atomic mass and number as superscript and subscript, respectively.

    • Representing electrons in shells with dots according to their arrangement.


Molecules and Compounds

  • Atoms form molecules (groups of two or more atoms bonded together) and compounds (two or more different atoms bonded).

  • Atoms bond to fulfill the octet rule for stability.

  • Bonds contain energy and allow organisms to utilize this energy for life processes.


Bonding Behavior

  • Bonding behavior can be inferred from the electron configuration of an element’s outer shell.

  • Besides H and He, most elements need 8 electrons in their outer shell for stability.

  • Atoms may share multiple electron pairs, forming single, double, or triple bonds (e.g., methane and oxygen gas).


Ionic Bonds

  • Electronegativity affects how atoms interact with electrons, leading to transfers.

  • When electrons transfer, ions with opposite charges form.

  • The electrostatic attraction between these charged ions creates ionic bonds.


Covalent Bonds

  • In covalent bonds, atoms share electron pairs.

  • Sharing can be equal (nonpolar bonds) or unequal (polar bonds), leading to molecular polarity.


Hydrogen Bonding

  • In polar molecules, hydrogen bears a slight positive charge, attracting nearby negatively charged areas (like oxygen in water).

  • Water’s polarity enables extensive hydrogen bonding crucial for biological structures and functions.


Properties of Water

  • Water exhibits several essential properties due to its polarity and hydrogen bonding:

    • High heat capacity: Requires significant energy to raise temperature, stabilizing cells' environments.

    • High heat of vaporization: Evaporative cooling helps organisms regulate temperature.

    • Solvent properties: Dissolves many substances due to being polar, categorizing substances as hydrophilic (water-attracting) or hydrophobic (water-repelling).

  • Cohesion and adhesion contribute to phenomena like water transportation in plants and surface tension.

  • Ice's lower density allows it to float, insulating aquatic life below in colder climates.


Acids and Bases

  • Water can dissociate into ions:

    • Acids release H+ ions.

    • Bases absorb H+ or release OH- ions.

  • pH measures acidity or basic level in a solution.

  • Buffers are critical in stabilizing pH to maintain biological function in cells.