Keystone Biology Notes

Abiotic

  • A nonliving factor in an ecosystem.

Active Transport

  • Movement of particles from low to high concentration areas.
  • Requires energy, usually from ATP or electrical charge differences across cell membranes.

Adenosine Triphosphate (ATP)

  • A molecule that provides energy for cellular reactions.
  • Releases energy when a phosphate group is removed from one of its high-energy bonds.

Adhesion

  • The property of water molecules to stick to other surfaces.

Agriculture

  • Artificial cultivation of food, fiber, and other goods.
  • Involves systematic growing and harvesting of organisms.

Allele

  • A version of a gene resulting from variations in nucleotide sequence.

Allele Frequency

  • How often an allele appears in a population; its relative frequency.

Analogous Structure

  • A physical structure in different species with similar function but different form and inheritance.

Aquatic

  • Describes an organism associated with a water environment.

Atom

  • The smallest unit of an element retaining the element's chemical and physical properties.

Biochemical Conversion

  • Changing organic matter into other chemical forms, like fuels.

Bioenergetics

  • The study of energy flow (energy transformations) into and within living systems.

Biogeochemical Cycles

  • Movement of abiotic factors between living and nonliving components within ecosystems.
  • Also known as nutrient cycles (e.g., water, carbon, oxygen, and nitrogen cycles).

Biological Macromolecules

  • Biomacromolecules that interact with biological systems and their environments.

Biology

  • The scientific study of life.

Biome

  • A large area with distinct plant and animal groups adapted to that environment.

Biosphere

  • The zone of life on Earth; the sum total of all ecosystems.

Biotechnology

  • Procedures using biological systems or living organisms to develop or modify products or processes for specific uses.
  • Commonly associated with genetic engineering.

Biotic

  • Describes a living or once-living organism in an ecosystem.

Carbohydrate

  • A macromolecule containing carbon, hydrogen, and oxygen in a 1:2:1 ratio.
  • Serves as a major energy source for living organisms (e.g., sugars, starches, cellulose).

Carrier (Transport) Proteins

  • Proteins embedded in the plasma membrane for moving ions, small molecules, and macromolecules into and out of cells.
  • Also known as transport proteins.

Catalyst

  • A substance that speeds up a chemical reaction without being changed by the reaction.

Cell

  • The basic unit of structure and function for all living organisms.
  • Common components: genetic material, cytoplasm, and a cell membrane.
  • Eukaryotic cells contain specialized organelles.

Cell Cycle

  • The series of events leading to cell division and duplication.
  • Main phases: interphase, nuclear division, and cytokinesis.

Cellular Respiration

  • A complex set of chemical reactions where potential chemical energy in "food" molecules is released.
  • Partially captured in the bonds of adenosine triphosphate (ATP) molecules.

Chloroplast

  • An organelle in plant cells and eukaryotic photosynthetic organisms where photosynthesis occurs.

Chromosomal Mutation

  • A change in the structure of a chromosome (e.g., deletion, duplication, inversion, and translocation).
    • Deletion: Loss of a chromosome segment containing genes.
    • Duplication: A chromosome segment is duplicated.
    • Inversion: A chromosome segment breaks off and reattaches in reverse order.
    • Translocation: A chromosome segment breaks off and attaches to a nonhomologous chromosome.

Chromosomes

  • A single piece of coiled DNA and associated proteins.
  • Linear in eukaryotic cells and circular in prokaryotic cells.
  • Contains genes that encode traits; each species has a characteristic number.

Cloning

  • A process of copying a cell, cell product, or organism from an original source.
    • DNA Cloning: Transfer of a DNA fragment to a self-replicating genetic element (e.g., bacterial plasmid).
    • Reproductive Cloning: Transfer of genetic material from a donor cell nucleus to an egg cell (nucleus removed) to create an embryo and an exact genetic copy of the donor organism.
    • Therapeutic Cloning: Taking undifferentiated embryonic cells (stem cells) for medical research.

Co-dominance

  • A pattern of inheritance where the phenotypic effect of two alleles in a heterozygous genotype fully and equally express each phenotype; not expressed in any other genotypic combination.

Cohesion

  • Intermolecular attraction between like molecules.
  • Surface tension results from the cohesive properties of water.

Community (Ecological)

  • Different populations of organisms interacting in a shared environment.

Competition

  • When individuals or groups compete for resources like territory, mates, water, and food.

Concentration

  • The amount or proportion of a substance when combined with another.

Concentration Gradient

  • The graduated difference in solute concentration per unit distance through a solution.

Consumer (Ecological)

  • An organism that obtains energy by feeding on other organisms or their remains.

Crossing-over

  • Exchange of genetic material between homologous chromosomes during anaphase I of meiosis.
  • Contributes to genetic variability in gametes and offspring.

Cytokinesis

  • The final phase of a cell cycle, resulting in cytoplasm division.

Decomposer

  • An organism that obtains nutrients from dead and decaying organic matter.
  • Allows nutrients to be accessible to other organisms.

Deoxyribonucleic Acid (DNA)

  • A biological macromolecule encoding genetic information for living organisms.
  • Capable of self-replication and RNA synthesis.

Diffusion

  • Movement of particles from high to low concentration areas; a result of kinetic molecular energy.

DNA Replication

  • The process in which DNA makes a duplicate copy of itself.

Dominant Inheritance

  • A pattern of inheritance where the phenotypic effect of one allele is completely expressed within a homozygous and heterozygous genotype.

Ecology

  • The study of relationships between organisms and their interactions with the environment.

Ecosystem

  • A system composed of organisms and nonliving components of an environment.

Embryology

  • The branch of zoology studying the early development of living things.

Endemic Species

  • A species found in its originating location and restricted to that geographic area.

Endocytosis

  • A process where a cell engulfs extracellular material through an inward folding of its plasma membrane.

Endoplasmic Reticulum (ER)

  • An organelle with folded membranes and sacs.
  • Responsible for production, processing, and transportation of materials inside and outside a eukaryotic cell.
    • Rough ER: Has surface ribosomes, synthesizes proteins for export.
    • Smooth ER: No ribosomes, synthesizes lipids and steroids, transports synthesized macromolecules.

Endosymbiosis

  • A theory that early eukaryotic cells formed from simpler prokaryotes.

Energy Pyramid

  • A model illustrating biomass productivity at multiple trophic levels in an ecosystem.

Energy Transformation

  • Energy changing from one form to another; some energy is lost to the environment.

Environment

  • The total surroundings of an organism or group of organisms.

Enzyme

  • A protein that increases the rate of a chemical reaction without being changed by the reaction; an organic catalyst.

Eukaryote

  • An organism composed of one or more cells with a membrane-bound nucleus, specialized organelles, and mitotic nuclear division.

Evolution

  • New species develop from preexisting species (macroevolution).
  • A change in allele frequencies in a population over generations (microevolution).

Exocytosis

  • A process where a cell releases substances to the extracellular environment by fusing a vesicular membrane with the plasma membrane.

Extinction

  • Describes a species with no known living individuals.

Extracellular

  • Located outside a cell.

Facilitated Diffusion

  • Transporting substances across a plasma membrane with the concentration gradient, aided by carrier proteins; does not require energy.

Food Chain

  • A simplified path illustrating the passing of potential chemical energy (food) from one organism to another.

Food Web

  • A complex arrangement of interrelated food chains illustrating energy flow between interdependent organisms.

Forensics

  • The science of tests and techniques used during crime investigations.

Fossils

  • Preserved remains or traces of organisms that once lived on Earth.

Founder Effect

  • A decrease in genetic variation caused by the formation of a new population by a small number of individuals from a larger population.

Frame-shift Mutation

  • The addition (insertion mutation) or removal (deletion mutation) of one or more nucleotides not divisible by three.
  • Results in a completely different amino acid sequence.
  • The earlier in the sequence the changes occur, the more altered the protein will be.

Freezing Point

  • The temperature at which a liquid changes to a solid.

Gamete

  • A specialized cell (egg or sperm) used in sexual reproduction containing half the normal number of chromosomes of a somatic cell.

Gene

  • A sequence of nucleotides in a DNA segment providing a blueprint for a hereditary trait.

Gene Expression

  • The process of a nucleotide sequence of a gene being used to make a functional product such as protein or RNA.

Gene Recombination

  • A natural process of breaking and joining a nucleic acid molecule to a different molecule; a result of crossing-over.

Gene Splicing

  • A type of gene recombination where DNA is intentionally broken and recombined using laboratory techniques.

Gene Therapy

  • The intentional insertion, alteration, or deletion of genes within an individual's cells and tissues for treating a disease.

Genetic Drift

  • A change in the allele frequency of a population as a result of chance events rather than natural selection.

Genetic Engineering

  • A technology that manipulates or alters the genetic material of a cell, resulting in desirable functions or outcomes that would not occur naturally.

Genetically Modified Organism

  • An organism whose genetic material has been altered through genetic engineering.

Genetics

  • The scientific study of inheritance.

Genotype

  • The genetic composition of an organism.

Golgi Apparatus

  • An organelle in eukaryotic cells responsible for processing proteins for release by the cell.

Gradualism

  • A proposed explanation that new species arise from slight modifications (mutations and phenotypic changes) over many generations.

Habitat

  • An area providing an organism with its basic survival needs.

Homeostasis

  • The regulatory process where an organism regulates its internal environment.

Homeostatic Mechanism

  • A regulatory mechanism maintaining a state of equilibrium (e.g., thermoregulation, water regulation, and oxygen regulation).

Homologous Structure

  • A physical characteristic in different organisms that is similar because it was inherited from a common ancestor.

Hypothesis

  • A scientifically testable explanation for an observed phenomenon.

Impermeable

  • Not permitting the passage of a substance or substances.

Incomplete Dominance

  • A pattern of inheritance where two alleles are neither dominant nor recessive.
  • Offspring have a phenotype blending the parental traits.

Inheritance

  • The process of genetic material being passed from parents to offspring.

Interphase

  • The longest-lasting phase of the cell cycle.
  • The cell performs most of its functions, such as preparing for nuclear division and cytokinesis.

Intracellular

  • Located inside a cell.

Isolating Mechanisms

  • Features preventing mating or breeding between two different species.
    • Temporal Isolation: Individuals active at different times.
    • Ecological Isolation: Individuals mate only in their specific habitat.
    • Behavioral Isolation: No sexual cues between species representatives.
    • Mechanical Isolation: No sperm transfer during attempted mating.
    • Gametic Incompatibility: Sperm transfer without fertilization.
  • Four factors preventing hybrid viability if matin occurs:
    • Zygotic Mortality: Fertilization but no zygote.
    • Hybrid Inviability: Embryo is not viable.
    • Hybrid Sterility: Resulting adult is sterile.
    • Hybrid Breakdown: First generation is viable, but future generations are not.

Law (Scientific)

  • Generalizes a body of observations; no exceptions have been found.
  • Explains things but does not describe them; serves as the basis of scientific principles.

Limiting Factor

  • A chemical or physical factor limiting the existence, growth, abundance, or distribution of an organism or population.

Lipids

  • Organic compounds composed mostly of carbon and hydrogen, including a smaller amount of oxygen.
  • Insoluble in water, serve as stored energy, and are a component of cell membranes.

Macromolecule

  • A polymer with high molecular mass.
  • Four main groups: carbohydrates, lipids, proteins, and nucleic acids.

Mechanism (Scientific)

  • Combination of components and processes serving a common function.

Meiosis

  • A two-phase nuclear division resulting in gametes with half the normal number of chromosomes.

Migration (Genetics)

  • The permanent movement of genes into or out of a population, changing allele frequencies.

Mitochondrion

  • A membrane-bound organelle in most eukaryotic cells; site of cellular respiration.

Mitosis

  • A nuclear division producing two somatic cells with the same genetic complement as the original cell.

Molecule

  • The smallest particle retaining chemical and physical properties, composed of two or more atoms.

Monomer

  • A molecule reacting with other molecules to form a polymer.
  • Each biological macromolecule has characteristic monomers.

Multicellular

  • Made up of more than one cell.

Multiple Alleles

  • More than two forms of a gene controlling trait expression.

Mutation

  • A permanent transmissible change of genetic material (e.g., chromosomal mutations and gene mutations).

Natural Selection

  • Organisms with inherited traits are better able to survive and reproduce compared to others of their species.

Nondisjunction

  • Sister chromatids fail to separate during and after mitosis or meiosis.

Nonnative Species

  • A species normally living outside a distribution range, introduced through human activity; also known as introduced, invasive, alien, nonindigenous, or exotic.

Nucleic Acid

  • A biological macromolecule (DNA or RNA) composed of C, H, N, O, and P carrying genetic information.

Nucleus

  • A membrane-bound organelle in eukaryotic cells that maintains the integrity of genetic material, controlling cellular activities.

Organ

  • An anatomical unit composed of tissues serving a common function.

Organ System

  • An anatomical system composed of a group of organs working together.

Organelle

  • A subunit within a cell with a specialized function.

Organic Molecule

  • A carbon-containing molecule that is a part of or produced by living systems.

Organism

  • A form of life; an animal, plant, fungus, protist, or bacterium.

Osmosis

  • Movement of water through permeable membranes from an area of higher water concentration (dilute) to an area of lower concentration (concentrated).

Passive Transport

  • Transportation of materials across a plasma membrane without using energy.

pH

  • Measure of acidity or alkalinity of an aqueous solution, scaling from 1 (acidic) to 14 (alkaline), with 7 being neutral.

Phenotype

  • The observable expression of a genotype.

Photosynthesis

  • A process in which solar radiation is chemically captured and resulting in potential chemical energy in the bonds of carbohydrate molecules.

Plasma Membrane

  • A phospholipid and protein molecule bilayer that encapsulates a cell and controls the movement of materials in and out.

Plastids

  • A group of membrane-bound organelles in photosynthetic organisms that are responsible for synthesis and storage of food.

Point Mutation

  • A single-base substitution causing the replacement of a single-base nucleotide with another.
    • Silent Mutation: No change in amino acid.
    • Missense Mutation: Different amino acid.
    • Nonsense Mutation: Insertion of a stop codon.

Polygenic Trait

  • A trait controlled by two or more genes at different loci on different chromosomes.

Population

  • A group of individuals of the same species living in a specific geographical area and reproducing.

Population Dynamics

  • The study of short- and long-term changes in the number of individuals for a given population, as affected by birth, death, immigration, and emigration.

Principle (Scientific)

  • A concept based on scientific laws and axioms where general agreement is present.

Producer (Ecological)

  • An organism that uses a primary energy source to conduct photosynthesis or chemosynthesis.

Prokaryote

  • A single-celled organism lacking a membrane-bound nucleus and specialized organelles.

Protein

  • A macromolecule containing carbon, hydrogen, oxygen, and nitrogen.
  • Performs structural and regulatory functions for cells.

Protein Synthesis

  • The process in which amino acids are arranged in a linear sequence through transcription of DNA to RNA and translation of RNA to a polypeptide chain.

Pumps (Ion or Molecular)

  • Molecular mechanisms transporting ions or molecules across a cellular membrane using an energy source (e.g., glucose, sodium (Na+), calcium (Ca+), and potassium (K+)).

Punctuated Equilibrium

  • A proposed explanation that species are generally stable over long periods, with occasional rapid changes.

Recessive Inheritance

  • The phenotypic effect of one allele is only expressed within a homozygous genotype; not expressed in a heterozygous condition with a dominant allele.

Ribosome

  • A cellular structure composed of RNA and proteins that is the site of protein synthesis.

Science

  • Evidence-based knowledge gained through observation and experimentation related to the natural world and technology.

Selective Breeding

  • The process of breeding organisms resulting in offspring with desired genetic traits.

Semiconservative Replication

  • The DNA molecule uncoils and separates into two strands.
  • Each original strand becomes a template on which a new strand is constructed, resulting in two DNA molecules identical to the original.

Sex-linked Trait

  • A trait associated with a gene carried by either the male or female parent (e.g., color blindness and sickle-cell anemia).

Speciation

  • A process caused by genetic isolation, creating a new genetically distinct species.

Species

  • The lowest taxonomic level of biological classification, consisting of organisms capable of reproduction that results in fertile offspring.

Specific Heat

  • The measure of the heat energy required to increase the temperature of a unit quantity of a substance by a certain temperature interval.

Succession

  • A series of predictable and orderly changes within an ecosystem over time.

Symbiotic Relationship

  • A relationship between two organisms.
    • Mutualism: Both organisms benefit.
    • Parasitism: One organism benefits, and the other is harmed.
    • Commensalism: One organism benefits, and the other is neither harmed nor benefits.

System

  • A set of interacting or interdependent components forming an integrated whole.
    • Open System: Able to interact with its environment.
    • Closed System: Isolated from its environment.

Temperature

  • Measure of the average kinetic energy of particles in matter; determines the rate and extent to which chemical reactions can occur in living systems.
  • Measured in degrees Celsius (^{\circ}C) or Fahrenheit (^{\circ}F).

Terrestrial

  • Describes an organism associated with a land environment.

Theory (Scientific)

  • Explanation of observable phenomena based on empirical data and scientific laws.
  • Provides a system of assumptions, principles, and rules to analyze, predict, or explain the nature or behavior of phenomena.

Tissue

  • An anatomical unit composed of cells organized to perform a similar function.

Transcription

  • The process of synthesizing a strand of messenger RNA (mRNA) using DNA as a template.

Translation

  • The process of decoding mRNA on a ribosome to produce a sequence of amino acids for protein synthesis.

Translocation

  • A segment of a chromosome breaks off and attaches to another chromosome.

Trophic Level

  • The position of an organism in relation to energy and nutrient flow through an ecosystem (e.g., producer, consumer, and decomposer).

Unicellular

  • Made up of a single cell.

Vestigial Structure

  • A physical characteristic in organisms that appears to have lost its original function.