Water 2

Biochemistry Course Overview

  • Course Code: CHEM 2713

  • Instructor: Dr. Amitabh Jha

  • Institution: Acadia University

Thermal Properties of Water

  • Relevant Compounds:
      - Water (H2O, MW 18 g/mol)
      - Ammonia (NH3, MW 17 g/mol)
      - Methane (CH4, MW 16 g/mol)

  • Structural Characteristics: All these molecules belong to the tetrahedral family but exhibit different thermal properties due to their bonding and molecular configuration.

  • Heat of Fusion:
      - Water: 6.01 kJ/mol
      - Ammonia: 5.66 kJ/mol
      - Methane: 0.94 kJ/mol

  • Analysis:
      - The heats of fusion decrease significantly from water to methane.
      - This trend indicates the strength of intermolecular forces. Draw the structural formula to visualize differences.

  • Hydrogen Bonding:
      - Water forms extensive hydrogen bonds due to two unshared electron pairs on oxygen, contributing to its unique properties in solid state.
      - Ammonia also forms hydrogen bonds but with a single unshared electron pair on nitrogen. Methane lacks hydrogen bonding capability entirely.
      - If NH3 were to form ice (melting point -97.8 °C), it would be expected to be less dense than liquid ammonia due to the structural framework of hydrogen bonds in the solid-state facilitating a more open lattice structure.

Ionization of Water

  • General Principle: Water can ionize, resulting in the formation of hydrogen ions (H+) and hydroxide ions (OH-).
      - The process can be represented as:
        - H2O<br>ightleftharpoonsH++OHH2O <br>ightleftharpoons H^+ + OH^-
      - This is a reversible reaction which defines the water equilibrium constant.

  • Hydronium Ion Formation:
      - In an aqueous solution, a proton can combine with a water molecule to form a hydronium ion:
        - H2O+H+<br>ightarrowH3O+H_2O + H^+ <br>ightarrow H_3O^+

  • Ion Product of Water (Kw):
      - The ion product is defined as:
        - Kw=[H+][OH]K_w = [H^+][OH^-]
      - At 25°C and 1 atm pressure, Kw=1.0imes1014K_w = 1.0 imes 10^{-14}

Acids, Bases and pH

  • Definitions:
      - Acid: A proton donor
      - Base: A proton acceptor
      - Many organic molecules function as weak acids or weak bases.

  • Conjugate Bases:
      - The deprotonated product of an acid-base dissociation reaction is termed a conjugate base.
      - Many biomolecules display acidic and/or basic characteristics.

Weak Acids and Bases

  • Weak acids and bases do not fully dissociate in solution.

  • Dissociation Constant for Weak Acid (HA):
      - HA<br>ightleftharpoonsH++AHA <br>ightleftharpoons H^+ + A^-
      - Dissociation constant (Ka) defined as:
        - Ka=rac[H+][A][HA]K_a = rac{[H^+][A^-]}{[HA]}

  • pKa Definition:
      - The pKa is the negative logarithm of the acid dissociation constant:
        - pKa=extlog(Ka)pK_a = - ext{log}(K_a)
      - A lower pKa indicates a stronger acid.

  • For bases, a similar expression can be used:
      - Kb=rac[BH+][OH][B]K_b = rac{[BH^+][OH^-]}{[B]}
      - Similarly, for base dissociation:
        - pKb=extlog(Kb)pK_b = - ext{log}(K_b)
        - The relationship:
          - KaimesKb=KwK_a imes K_b = K_w
      - An increase in K means a decrease in pK, indicating stronger acids or bases.

pH Measurement and Application

  • pH Definition:
      - The pH scale measures hydrogen ion concentration:
        - pH=extlog[H+]pH = - ext{log}[H^+]
        - Alternatively,
        - pH=extlog[H3O+]pH = - ext{log}[H_3O^+]

  • pKa Relationship: pKa is a measure of a weak acid's strength and calculated as
        - pKa=extlog(Ka)pK_a = - ext{log}(K_a)

Dissociation Constants of Common Weak Acids

  • Example Table:

    Acid

    Anion

    Ka

    pKa

    Strength

    Acetic Acid

    CH3COO

    1.76 x 10^-5

    4.76

    Monobasic

    Carbonic Acid

    H2CO3

    4.5 x 10^-7

    6.35

    Monobasic

    Bicarbonate

    HCO3^-

    5.61 x 10^-11

    10.33

    Weakest

    Lactic Acid

    CH3CHCOOH

    1.38 x 10^-4

    3.862

    Weak acid

    Phosphoric Acid

    H3PO4

    7.25 x 10^-3

    2.14

    Strongest

  • Activity vs Concentration: Equilibrium constants should be determined with activities wherever possible, but concentrations might be substituted for reasonable accuracy in dilute solutions.

Buffers and pH Regulation

  • Importance:
      - Regulation of pH is essential in biological systems (e.g., Le Chatelier’s principle).
      - Changes in pH can have pathological consequences (e.g., acidosis or alkalosis).

  • Buffer Components: Buffers typically consist of a weak acid and its conjugate base.

  • Equilibrium:
      - Buffers work by establishing equilibrium between their components and follow Le Chatelier’s principle — equilibrium shifts in a direction that helps relieve stress.

Buffering Capacity

  • Definition: The ability of a buffer to maintain a specific pH is based on:
      1. The molar concentration of the acid-conjugate base pair.
      2. The ratio of their concentrations.

  • Concept: Buffers have a buffering capacity that is directly proportional to their concentration.

Henderson-Hasselbalch Equation

  • Equation:
      - The equation defines the relationship between pH, pKa, and concentrations of conjugate base ([A-]) and undissociated weak acid ([HA]):
        - pH=pKa+extlograc[A][HA]pH = pK_a + ext{log} rac{[A^-]}{[HA]}

  • Optimal Buffering: Buffers are most effective when composed of equal parts weak acid and conjugate base, providing best buffering usually within one pH unit above and below pKa.

Physiological Buffers

  • Example: Bicarbonate Buffer is crucial in blood plasma for maintaining pH:
      - The reaction:
        - CO2+H2O<br>ightleftharpoonsH++HCO3CO2 + H2O <br>ightleftharpoons H^+ + HCO3^- (HCO3^- is bicarbonate).
        - This reaction is reversible and managed by the enzyme carbonic anhydrase.

Practice Problems

  1. Calculate the pH of a mixture of 0.25 M acetic acid and 0.20 M sodium acetate. The pKa of acetic acid is 4.76.

  2. Calculate the ratio of lactic acid and lactate required in a buffer system at pH 4.9. The pKa of lactic acid is 3.86.

  3. Assignments: Complete the problems and upload the document on Moodle.

Questions

  • Open to any inquiries related to the material covered above.