Water 2
Biochemistry Course Overview
Course Code: CHEM 2713
Instructor: Dr. Amitabh Jha
Institution: Acadia University
Thermal Properties of Water
Relevant Compounds:
- Water (H2O, MW 18 g/mol)
- Ammonia (NH3, MW 17 g/mol)
- Methane (CH4, MW 16 g/mol)Structural Characteristics: All these molecules belong to the tetrahedral family but exhibit different thermal properties due to their bonding and molecular configuration.
Heat of Fusion:
- Water: 6.01 kJ/mol
- Ammonia: 5.66 kJ/mol
- Methane: 0.94 kJ/molAnalysis:
- The heats of fusion decrease significantly from water to methane.
- This trend indicates the strength of intermolecular forces. Draw the structural formula to visualize differences.Hydrogen Bonding:
- Water forms extensive hydrogen bonds due to two unshared electron pairs on oxygen, contributing to its unique properties in solid state.
- Ammonia also forms hydrogen bonds but with a single unshared electron pair on nitrogen. Methane lacks hydrogen bonding capability entirely.
- If NH3 were to form ice (melting point -97.8 °C), it would be expected to be less dense than liquid ammonia due to the structural framework of hydrogen bonds in the solid-state facilitating a more open lattice structure.
Ionization of Water
General Principle: Water can ionize, resulting in the formation of hydrogen ions (H+) and hydroxide ions (OH-).
- The process can be represented as:
-
- This is a reversible reaction which defines the water equilibrium constant.Hydronium Ion Formation:
- In an aqueous solution, a proton can combine with a water molecule to form a hydronium ion:
-Ion Product of Water (Kw):
- The ion product is defined as:
-
- At 25°C and 1 atm pressure,
Acids, Bases and pH
Definitions:
- Acid: A proton donor
- Base: A proton acceptor
- Many organic molecules function as weak acids or weak bases.Conjugate Bases:
- The deprotonated product of an acid-base dissociation reaction is termed a conjugate base.
- Many biomolecules display acidic and/or basic characteristics.
Weak Acids and Bases
Weak acids and bases do not fully dissociate in solution.
Dissociation Constant for Weak Acid (HA):
-
- Dissociation constant (Ka) defined as:
-pKa Definition:
- The pKa is the negative logarithm of the acid dissociation constant:
-
- A lower pKa indicates a stronger acid.For bases, a similar expression can be used:
-
- Similarly, for base dissociation:
-
- The relationship:
-
- An increase in K means a decrease in pK, indicating stronger acids or bases.
pH Measurement and Application
pH Definition:
- The pH scale measures hydrogen ion concentration:
-
- Alternatively,
-pKa Relationship: pKa is a measure of a weak acid's strength and calculated as
-
Dissociation Constants of Common Weak Acids
Example Table:
Acid
Anion
Ka
pKa
Strength
Acetic Acid
CH3COO
1.76 x 10^-5
4.76
Monobasic
Carbonic Acid
H2CO3
4.5 x 10^-7
6.35
Monobasic
Bicarbonate
HCO3^-
5.61 x 10^-11
10.33
Weakest
Lactic Acid
CH3CHCOOH
1.38 x 10^-4
3.862
Weak acid
Phosphoric Acid
H3PO4
7.25 x 10^-3
2.14
Strongest
Activity vs Concentration: Equilibrium constants should be determined with activities wherever possible, but concentrations might be substituted for reasonable accuracy in dilute solutions.
Buffers and pH Regulation
Importance:
- Regulation of pH is essential in biological systems (e.g., Le Chatelier’s principle).
- Changes in pH can have pathological consequences (e.g., acidosis or alkalosis).Buffer Components: Buffers typically consist of a weak acid and its conjugate base.
Equilibrium:
- Buffers work by establishing equilibrium between their components and follow Le Chatelier’s principle — equilibrium shifts in a direction that helps relieve stress.
Buffering Capacity
Definition: The ability of a buffer to maintain a specific pH is based on:
1. The molar concentration of the acid-conjugate base pair.
2. The ratio of their concentrations.Concept: Buffers have a buffering capacity that is directly proportional to their concentration.
Henderson-Hasselbalch Equation
Equation:
- The equation defines the relationship between pH, pKa, and concentrations of conjugate base ([A-]) and undissociated weak acid ([HA]):
-Optimal Buffering: Buffers are most effective when composed of equal parts weak acid and conjugate base, providing best buffering usually within one pH unit above and below pKa.
Physiological Buffers
Example: Bicarbonate Buffer is crucial in blood plasma for maintaining pH:
- The reaction:
- (HCO3^- is bicarbonate).
- This reaction is reversible and managed by the enzyme carbonic anhydrase.
Practice Problems
Calculate the pH of a mixture of 0.25 M acetic acid and 0.20 M sodium acetate. The pKa of acetic acid is 4.76.
Calculate the ratio of lactic acid and lactate required in a buffer system at pH 4.9. The pKa of lactic acid is 3.86.
Assignments: Complete the problems and upload the document on Moodle.
Questions
Open to any inquiries related to the material covered above.