Micro Lab Week 3 Notes

Learning objectives

  • Assimilate basic laboratory and culture techniques
  • Media preparation and sterilization
  • Develop aseptic transfer skills
  • Perform a streak-plate
  • Understand the reason for negative staining
  • Perform thin smear and negative stain
  • Appreciate the simplicity of the simple stain
  • Complete smear preparation and simple staining

Culture media

  • Food for your microbes
  • Types of media:
    • Liquid (broth): propagation of large numbers
    • Semisolid: supports motility and anaerobic growth
    • Solid: used for colony appearance, pure culture isolation, and storage
  • Media categories by composition:
    • Chemically defined (synthetic): known amounts of pure chemicals; suitable for autotrophic or non-fastidious organisms
    • Complex (non-synthetic): unknown chemical composition; supports broad nutritional requirements; suitable for fastidious organisms

Concept of sterility

  • The state of being free from biological contaminants
  • Absolutely essential for the preparation of microbiological culture media
  • Your microorganism’s life depends on it!

Sterilization

  • Process by which all living cells, spores, and acellular entities are either destroyed or removed
  • Methods include autoclaving, dry-heat sterilization, filtration
  • Disinfection: the killing, inhibition, or removal of microorganisms that may cause disease
  • Sanitization: reduction of the microbial population to levels that are considered safe by public health standards

Importance of sterility

  • In the lab setting:
    • Contaminated cultures can ruin experiments
    • Confounds experimental results
    • Renders data interpretation meaningless
  • In the real world:
    • Misinterpretation of specimen samples
    • Delayed or incorrect diagnoses
    • Wound and surgical infections
    • Tainted pharmaceutical products
    • Impacts on time, money, health

Ensuring sterility

  • Aseptic technique: a set of procedures followed to ensure safety and prevent microbial contamination
  • Underpins all work in microbiology!

General rules for aseptic technique…

  • Make transfers over a disinfected surface
  • Start operations only when all apparatus and materials are within immediate reach
  • Complete all operations as quickly as possible, but without any hurry
  • Vessels must be open for the minimum amount of time possible

General rules for aseptic technique… (continued)

  • While vessels are open, all work must be done close to a Bunsen burner flame where air currents are drawn upwards
  • On opening a test tube or bottle, the neck must be immediately warmed by flaming with the vessel held as near to horizontal as possible and so that any movement of air is outwards from the vessel
  • All items which come into contact with microorganisms must be sterilized before and after each such exposure

Nature is a melting pot of microbes

  • Bacteria often grow in populations containing many different species
  • How can we study and characterize just one specific species from the mix?
  • Divide and conquer! Clinical labs require growth of pure cultures prior to performing biochemical tests and identifying a suspected microbe

Isolation techniques

  • Based on the notion that if a bacterial cell is separated from other cells and given ample room for growth, it will form a colony
  • Large number of cells growing as discrete entities on solid medium
  • Well-isolated colonies are the foundation for pure culture methods

Streak-plate technique

  • Bacterial mixture is streaked over the agar surface
  • Establishes a dilution gradient
  • Achieve isolated colonies
  • Assume that each colony represents outgrowth from a single bacterial cell, thus a clone of a pure culture

Streak-plate technique (practical description)

  • Apply, flame, heavy growth
  • Apply loopful of culture
  • Allows discrete (start) colonies to form
  • Apply flame again to advance the streak
  • Progress from heavy to light growth to achieve isolation

Colony variations

  • Forms: punctiform, circular, filamentous, irregular, rhizoid, spindle
  • Elevations: flat, raised, convex, pulvinate, umbonate
  • Margins: entire, undulate, lobate, erose
  • Note: Some colonies may appear filamentous or curved in shape

Aseptic technique in action

  • Escherichia coli
    • Broth-to-broth transfer
    • Broth-to-slant transfer
    • How do you know you achieved growth!?
  • Mixed culture: Serratia marcescens + Micrococcus luteus
    • Broth-to-agar plate transfer
    • Can you see colonies of both bacteria!?

Negative staining (Ex. 12)

  • Purpose: observe morphology of live bacteria
  • Key features:
    • No heat-fixing or harsh stains
    • Useful for poorly staining bacteria
    • Allows observation of capsules
  • Dyes used: acidic dye (negatively charged) is repelled by bacteria; Nigrosin is commonly used

Thin smear and negative staining

  • Preparatory notes:
    • Thoroughly clean glass slides
    • Sterilize loop before and after adding bacteria
    • Air dry; no heat-fixing
    • Disinfect objectives when done

Simple staining (Ex. 10/11)

  • Value lies in simplicity: useful for observing shape, size, and arrangement
  • Process involves heat-fixing, which both kills and fixes bacteria to the slide
  • Dyes: basic dyes (positively charged) form ionic bonds with bacteria
    • Common examples: crystal violet (CV), methylene blue (MB), saffanin (SAF)

Smear preparation and simple stain

  • Practical notes:
    • Sterilize loop before and after adding bacteria
    • Air dry completely, then heat-fix
    • Do not rinse cells with a stream of water directly onto the smear
    • After staining and rinsing, blot gently to avoid removing bacteria from the slide

Cultures to be stained

  • Negative staining (Ex. 12): Bacillus megaterium
  • Simple staining (Ex. 10/11):
    • Bacillus megaterium
    • Staphylococcus epidermidis
    • Micrococcus luteus (from agar plate)
    • Serratia marcescens (from agar plate)
    • Corynebacterium xerosis