Bio midterm
Biology Midterm Study Guide
Quizlet- https://quizlet.com/996520468/biology-midterm-study-guide-overview-flash-cards/?i=4cqyim&x=1jqt
Freshman year
Science Practices
How do we build and refine models that describe and explain the natural and designed world?
Models help describe and explain Phenomena, such as using diagrams to represent the process of photosynthesis or the structure of DNA.
What constitutes useful scientific evidence?
Useful scientific evidence is empirical, reproducible, and supports or refutes hypotheses based on observations and experiments.
How is scientific knowledge constructed?
Knowledge is constructed through systematic investigation, data collection, and analysis, leading to theories and laws.
How does scientific knowledge benefit – deepen and broaden - from scientists sharing and debating ideas and information with peers?
Scientists share and debate findings through peer-reviewed journals, conferences, and collaborations, enhancing the depth and reliability of scientific understanding.
Introduction to Biology
Safety
Always follow lab protocols, wear protective gear, and handle chemicals and equipment responsible to prevent accidents and ensure safety in experiments.
Scientific method
Steps: Observation → Hypothesis → Experiment → Data Collection → Conclusion
Example experiment: testing the effect of light intensity on plant growth
Experimental design
Includes independent variable(manipulated variable), dependent variable (measured/ affected variable), and constants(unchanged conditions).
Independent vs. Dependent Variables
Independent Variable
The factor changes by the researcher
Light intensity for the previous example experiment
Dependent Variable
The measured response that is affected by the independent variable
Plant height from the previous example experiment
How to use measurement and observation tools
Make sure measurements are accurate
Use tools like microscopes, rulers, and thermometers for accurate measurements.
Observations should be systematic and recorded for analysis.
Interpretation of data in tables and graphs
Analyze data in tables and graphs to identify trends and relationships.
For example, a line graph could show correlations between temperature and plant color.
Study graphs from Unit One
Characteristics of living things
All living things share the following traits
Made of cells
Use Energy
Grow and Develop
Reproduce
Respond to Stimuli
Maintain homeostasis
Adapt and evolve
Core Content Theme: Organization and Development
How does structure relate to function in living systems from the organismal to the cellular level?
Structure relates to the function of living things from the organismal to the cellular level because even a simple atom has a distinct structure that creates everything that exists. These structures build on top of each other to create larger structures, which eventually create organisms. Therefore, without this complex network, we wouldn't be able to live as successfully or as long as we do, and neither would any other organism.
Biochemistry
Atom: Electrons, protons, neutrons, nucleus
Atoms are basic units of matter with a nucleus made of protons(positively charged) and neutrons(neutral charge) surrounded by electron clouds(negative charge)
Ions
Charged atoms due to electron loss or gain
Ionic Bonds
The transfer of electrons between two unstable atoms (incomplete valence electron shell)
Metal x Non-metal
Covalent Bonds
The sharing of electrons between unstable atoms
Hydrogen Bonding
Weak bonds between polar molecules are crucial for water's unique properties.
Properties of water
Cohesion, adhesion, high heat capacity, and solvent properties
pH: Acids, bases
Measures acidity or alkalinity
pH < 7
Acidic
pH > 7
Basic
pH = 7
Neutral
Monomers vs. Polymers
Monomers are single-units
glucose
Polymers are chains of monomers
Starch
Macromolecules
Carbohydrates(Polymer)
Monomer: Sugar
The carbon is hydrated
(literally what carbohydrate means)
Made of carbon, hydrogen, and oxygen
There is a functional group but it's not useful
Lipids(Polymer)
Monomer: Fatty Acid Chain
It has a hydrophobic tail(water-hating tail and a Hydrophilic head(water-loving tail)
Fatty acids are more often than not attached to a glycerol molecule carboxyloxyl group at the end of the chain.
Attach multiple fatty acid chains to a glycerol molecule
Functional Group: Carboxyl (-COOH)
Proteins(Polymer)
Polymer: Amino Acids
Carbon, Hydrogen, Nitrogen, Oxygen and Sulfur
Functional Group: Amino (-NH2)& Carboxyl(-COOH)
The R-Group is what makes proteins different
The general structure of an Amino Acid (image above)
The side/ R group varies
Can be as simple as hydrogen but can also be more complicated because it determines which of 20 different types of amino acids are formed.
Nucleic Acids (Polymer)
Monomer: Nucleotide
Carbon, Hydrogen, Nitrogen, Oxygen and Phosphorus
Functional Group: Phosphate group
All have a phosphate group, five-carbon sugar, and a nitrogenous base(Nitrogen containing base)
DNA is made up of Nucleic Acids
Nucleotides have three components
Phosphate group (P)
Pentose (5-C) sugar
Sugar can be a Deoxyribose sugar or a ribose sugar (2 variations)
Nitrogen-containing base
adenine(A), guanine(G),cytosine(C), thymine(T), uracil (U)
Adenine bonds with thymine or uracil
Cytosine bond with Guanine
Carbohydrates: Monosaccharides, disaccharides, +polysaccharides
Sugars end in -use
Monosaccharide
mono- “one” -saccharide “sugar”
simple sugar
building blocks for complex sugars
Example: glucose, fructose, galactose
Disaccharide
di- “two” -saccharide “sugars”
2 monosaccharides
Example:Glucose + Fructose --> Sucrose + H2O
Polysaccharide
poly- “many” -saccharide “sugars”
This can mean thousands of glucose molecules strung together
long sugar chains
Examples:
Structural
Cellulose
The most abundant compound on earth; plants
Chitin
Exoskeletons of anthropods
Storage
glycogen (animal starch)
Starch (Found in plants)
Structural use
Helps hold up the plant
Strings of celery are polysaccharides
Chitin comprises an exoskeleton
Storage use
Store carbohydrates/energy
Humans don't have starch
Enzymes: Activation Energy
Enzymes lower the activation energy needed for a reaction, allowing it to proceed faster
Lipids: Glycerol, fatty acids, unsaturated fatty acids vs. saturated fatty acids
Fatty Acid
glycerol molecule + fatty acid chain
made up of chains of methyl (-CH) units
carboxyl group (-COOH) at one end
Lipids are macromolecules but aren't polymers
To make things bigger in a lipid we attach additional fatty acid chains to a glycerol molecule
Saturated
the molecule is saturated with hydrogen; there are no double bonds; the maximum number of hydrogen bonds exists
Has to be fully saturated with hydrogens.
There are no bends in the chain
Are solids (packed tightly together)
Unsaturated
the molecule has at least one double bond meaning there isn’t the maximum number of hydrogen bonds
kink/bend in the chain prevents molecules from packing closely together (Are liquids)
There is one double bond
Unsaturated stuff is “better” because it is a liquid.
Think of which one you want in your arteries. Solids will clog arteries, liquids will flow freely.
Nucleic Acids (DNA, RNA): Nucleotides
Nucleotide
nitrogen-containing (nitrogenous) base
phosphate group
5-C (pentose) sugar
There are two types of nucleic acids
DNA - Deoxyribonucleic Acid
Found in the cell’s nucleus
These nucleotides have a deoxyribose sugar
Deoxy - 1 less oxygen
These nucleotides have the nitrogenous bases of:
A, T, C, G
RNA
Found in the cell's nucleus and cytoplasm
Have a ribose sugar
Had the nitrogenous bases of
A, U, G, C
Cellular Processes
Breakdown, rearrangement, and synthesis of molecules
Cellas break down macromolecules for energy or rearrange them for new cellular components
Dehydration synthesis (Condensation)
Known as condensation polymerization
It is a type of synthesis reaction
A chemical reaction in which smaller molecules join together to make a larger molecule
Joins monomers to make polymers
Releases water as a by-product
Commonly achieved by combining a hydroxyl (OH) from one monomer and a hydrogen (H) from another monomer to create water.
Hydrolysis
Breaks apart macromolecules(polymers) into monomers by adding a water molecule to break a bond
Opposite of dehydration synthesis
Metabolism
The sum of all chemical reactions in an organism
Catabolism
Breaking down of molecules
Cellular respiration
Anabolism
Synthesis of molecules
photosynthesis
Homeostasis
Maintenance of optimal conditions
Internal factors: organism possess mechanisms to regulate internal conditions such as:
Temperature
Through physical and behavioral
pH levels
Buffers help maintain a stable pH
Water balance
Osmosis controls the amount of water that enters and exits a cell
Nutrient Levels
Digestive processes help regulate nutrient absorption
External factors
Temperature and Fluctuations
Seasonal changes, weather changes
Water Availability
Drought conditions, access to water
Nutrient Availability
Food availability and quality
Cell membrane structure and functions
Structure
The cell membrane is composed of a phospholipid bilayer with protein, cholesterol, and carbohydrates.
Hydrophilic heads & Hydrophobic tails
Protein helps with transport, cell signaling, and cell adhesions.
Cholesterol helps maintain membrane fluidity.
Carbohydrates are involved in cell recognition and communication.
Function
Regulates what enters and exits the cell
Maintains the cell's shape
Receives and transmits signals
Allows cells to identify and interact with one another
Response to changing external environment: tonicity - hypertonic, hypotonic, isotonic
Tonicity
The concentration of solutes( dissolved substances) outside the cell relative to the inside.
Hypertonic
The external solution has a higher solute concentration than the cells' internal environment.
Water moves out of the cell > Cell shrinks
Hypotonic
The external solution has a lower solute concentration than the cell’s internal environment.
Water moves into the cell > and the cell swells
Isotonic
The solute concentration is equal inside and outside of the cell.
Water movies in and out at equal rates > size remains the same
Cell transport
Diffusion
The movement of molecules from an area of high concentration to a lower concentration.
Osmosis
The diffusion of water across a semi-permeable membrane.
Facilitated DIffusion
The transport of molecules across the membrane with the help of protein channels or carriers.
Passive Transport
The movement of substances across the membrane without requiring energy.
This means moving from an area of high concentration to a low concentration.
Ex. diffusion, facilitated diffusion, osmosis
Active Transport
Movement of substances across their concentration gradient, requiring energy.
This means moving from an area of low concentration to an area of high concentration.
Endocytosis
The process in which cells engulf materials from the external environment by forming vesicles.
Exocytosis
The process by which cells release materials from within by fusing vesicles with the cell membrane.
Enzyme function
Enzymes
Biological catalysts that speed up chemical reactions within cells
Specificity
Enzymes are highly specific, meaning they only catalyze a particular reaction or type of reaction.
Active Site
The region on the enzymes where the substrate binds
Factors Affecting Enzyme Activity
Temperature
Enzymes have an optimal temperature for activity
pH
Enzymes have an optimal pH range for activity
Substrate concentration
Increasing substrate concentration generally increases the reaction rate up to a point
Enzyme Concentration
Increasing enzyme concentration generally increases the reaction rate
Inhibitors
Substances that can reduce or stop enzyme activity
Organization of Living Things
Characteristics of living things
All living things exhibit the following traits:
Organization (cellular and molecular).
Growth and development.
Energy use.
Response to stimuli.
Homeostasis.
Reproduction.
Evolution.
Cell types: Prokaryotic vs. Eukaryotic Cells, Animal vs. Plant Cells
Prokaryotic
Smaller
Genetic information is in nucleoid
DNA is circular
Functions take place in the cytoplasm + membrane
Eukaryotic
Larger Nucleus
Nucleus has genetic information
Has membrane-bound organelles
Animal Cells
No cell wall
Have ly
Plant cells
Cell theory
All living things/ things that were living contain cells
Cells are the basic units of structure and function in living things
Cells are created from cells
Cell Structures
Cell/Plasma membrane
The plasma membrane separates the cell's internal reactions and structures from the environment and regulates the substance moving in and out of the cell. Plasma membranes (and membranes surrounding many cell organelles) consist of a bi-layer of phospholipid molecules. According to scientific discoveries, the plasma membrane behaves like a thin layer of fluid covering the cell's surface. L
Cell wall
Most plants are surrounded by a cell wall. The cell wall both protects and supports the cell, The primary walls are made of cellulose and pectin. Other cellulose layers make up the secondary walls.
Cytoplasm/Cytosol
The jelly-like fluid that fills the inside of a cell, acts as the medium for most cellular activities by housing organelles, facilitating the movement of molecules within the cell, and providing a space for various metabolic reactions to occur.
Nucleus
The control center for all cell activity, The nucleus contains hereditary instructions(DNA)and other molecules that function in how the instructions are read, modified, and dispersed.
Nucleolus
The nucleolus is a thick protoplasm found in the nucleus. It produces and assembles ribosomes.
Nuclear Membrane
The nuclear membrane separates the nuclear materials from other parts of the cell.
Lysosome
Lysosomes are rounded organelles that bud from the edges of Golgi bodies. Lysosomes can degrade organelles that are worn out or have served their functions; they can also destroy bacteria and foreign particles, and break down old cell parts.
Chromosomes
Chromosomes are long thread-like associations of genes, composed of chromatin. Chromatin chains are clear during the interphase of the cell cycle. Immediately before cell division the individual chromosomes become evident. Chromosomes contain the DNA that codes for proteins.
Mitochondria
They are membrane organelles that are the center of cellular respiration. The mitochondria carry out the chemical reaction that releases energy stored in carbohydrates to form molecules such as ATP, which provides energy to drive a variety of cellular reactions.
Golgi Apparatus
Carried here by vesicles
Packages and sorts proteins
Rough Endoplasmic Reticulum
The rough ER is the same as the smooth ER, except that it is studded with ribosomes. Thus, like the smooth ER, materials can pass through the cytoplasm where they are synthesized and/or “treated” and then sent on their way; because it is studded with ribosomes, those materials are usually protein chains destined for secretion.
Smooth Endoplasmic Reticulum
The smooth ER curves through the cytoplasm like interconnected pipelines. These “pipelines” allow materials to pass allow materials to pass through the cytoplasm, where they are synthesized and/or “treated” and then sent on their way. The smooth ER lacks ribosomes and, thus, does not synthesize proteins. However, it is the major site of lipid synthesis in many cells.
Vacuole
Vaculoles are membrane structures that serve as storage areas for food, water, or waste. However, the main function of vacuoles is to increase cell size and surface area.
Vesicles
Carry protein from ER to Golgi and then the final destination
Plastid
Various types of plastids serve several different functions in plant cells. For instance, leucoplasts are the plastids of plant cells.
Chloroplasts
Capture energy from the sunlight and convert it into food that contains chemical energy.
Ribosomes
Ribosomes are the “workbenches” for protein synthesis; new polypeptide chains, as coded for by DNA, are constructed at their surface.
Microtubules/Microfilaments (Cytoskeleton)
Microtubules are straight, hollow rods. The microtubules help to shape and support the cell.
Microfilaments are solid rods. They are known for their part in muscle contraction and help shape and support the cell.
Matter and Energy Transformations
How is matter transferred and energy transferred/transformed in living systems?
Matter is transferred/transformed in and out of living systems through biogeochemical cycles such as the carbon, nitrogen, and water cycles. These cycles allow for nutrients to flow through ecosystems starting with producers converting sunlight into chemical energy via photosynthesis, followed by consumers and decomposers transferring and transforming that energy.
Biosynthesis
Cycling of matter among living and nonliving components
The total amount of matter in a system remains constant, even though its form and location change (Law of Conservation of Matter)
Biogeochemical Cycles
Nitrogen Cycle
Nitrogen is fixed from the atmosphere by bacteria, converted into forms usable by plants (nitrates), and recycled through decomposition and denitrification.
Water Cycle
Water cycles through evaporation, condensation, precipitation, runoff, and infiltration into soil and groundwater.
Carbon Cycle
Carbon moves through photosynthesis (plants take in CO₂ to make glucose), respiration (organisms release CO₂), decomposition (organic matter breaks down), and combustion (burning fossil fuels releases CO₂).
Energy Flow
Food webs are limited
Food Chains
The linear flow of energy from producers to consumers
Food Webs
Complex networks of interconnected food chains
Biomagnification/Bioaccumulation
Pyramidal relationships exist
Pyramids of Numbers
Represents the number of organisms in each trophic level
Pyramids of Biomass
Depicts the mass of organisms at each trophic level.
Pyramids of Energy
Shows energy transfer, with only about 10% passed to the next level.
Calculating energy transfer: Law of 10’s
Only ten percent of energy travels between each tropic level
All matter tends toward more disorganized states (entropy), and living systems require a continuous input of energy to maintain their chemical and physical organizations.
First Law of Thermodynamics
Energy can not be created or destroyed
Second Law of Thermodynamics
The total entropy of an isolated system can never decrease over time.
Photosynthesis
Photosynthesis Equation
Cellular respiration Equation
Release of Chemical Energy
Photosynthesis and cellular respiration are connected. Photosynthesis produces glucose, which is then used by cellular respiration to release energy. This energy is used by cells to power their activities, such as growth, movement, and reproduction.
Interdependence
How are Organisms dependent on Each other?
Organisms are dependent on each other in many ways. For example, plants provide food for animals, and animals pollinate plants. Plants also produce oxygen, which is essential for animal life. Animals decompose dead plants and animals, which return nutrients to the soil. Overall, organisms depend on each other to keep a healthy and functioning ecosystem.
Populations and Communities
Limiting Factors
A factor that controls the growth of a population
Density-dependent factors
Factors that have a greater effect as population density increases
Ex. competition, predation, disease
Density-independent factors
Factors that affect all populations regardless of their density
Ex. natural disasters, weather events
Abiotic vs. Biotic
Abiotic factors
Non-living components of an ecosystem
Ex.sunlight, temperature, water, soil
Biotic factors
Living components of an ecosystem
Ex.plants, animals, fungi, bacteria
Range of Tolerance
The range of environmental conditions within which a species can survive and reproduce
Temperature tolerance
Species have upper and lower temperature limits.
Salinity tolerance
Organisms have a range of salt concentrations they can tolerate.
pH tolerance
Species can survive within a specific pH range.
Niche vs. Habitat
Niche
An organism's role in its environment, including how it uses resources, interacts with other species and contributes to the ecosystem.
(its "profession")
Habitat
The general place where an organism lives
(its "address").
Ecosystem Stability
Competition
The struggle between organisms for the same limited resources
Ex. food, water, space, mates
Intraspecific competition
Competition between individuals of the same species.
Interspecific competition
Competition between individuals of different species.
Competitive Exclusion Principle
No two species can occupy the same niche in the same habitat at the same time. One species will eventually outcompete the other.
Predation: Predator, Prey
Predation will increase with populated
Predators and prey have a strong influence on each other
Predators and prey depend on each other for an increase or decrease in population
There is however a lag in growth
Continuous predator-prey dynamics
Symbiotic relationships
Commensalism
One species benefits and the other is unaffected
Barnacle on a whale
Mutualism
Both species benefit
Pees pollinating flowers
Parasitism
One species benefits at the expense of the other
Parasite on a Host
Population Density, Dispersion, Distribution
Population Growth Patterns
Emigration
When individuals move away from a population
Immigration
When individuals increase a population from elsewhere
Mortality
Death rate
Natality
Birth rate
Exponential
Occurs a population has no limits to its growth
Population increases rapidly
J - shaped curve
Logistic (S-shaped curve)
Occurs when there is a limiting factor
It starts as a J-shaped curve
Something in the environment becomes limiting
Population fluctuates at carrying capacity
Called ecological overshoot
Going above what the ecosystem can support
Factors that impact population growth
Age structure of a population
Developed
he birth rate falls to meet the death rate
Developing
The death rate begins to fall, but birth rates remain high for a time T
Underdeveloped nations
The birth rate and death rate are equally high
Biodiversity
The variety of life on Earth, including the genetic diversity within species, the variety of species, and the variety of ecosystems.
Stable Ecosystems
Characteristics
High biodiversity
Complex food webs
Efficient nutrient cycling
Ability to resist and recover from disturbances
Succession
A predictable way a community can change over time
Determined by the type of disturbance or if soil was left behind
Primary Succession
No remnants of an older community
No soil left
Caused by
Volcanic Eruptions
Glacier Melting
Soil has to be made
It occurs in all biomes
Deciduous Forests
Grasslands
Aquatic Environments
Tropical Rainforest
Bare Rock > Oppurtunist/Pioneer Species > Simple plants > More Complex Structures
Pioneer Species have few requirements
The first species to colonize bare areas
The start of life
As each level passes they add a layer of soil
Secondary Succession
Soil is present
Disturbance caused by a Natural disaster or Human-caused
Buildings
Mowing lawn
Floods
Earthquakes
Pioneer species are commonly simpler plants than species like Lichens
Climax Community
Thought of as a specific, uniform, and stable community the “end“ of Succession
That is not always true because Climax Communities aren't always stable
Biomes: Climatic influence
Biomes: large terrestrial ecosystems categorized by specific climate conditions. (temperature and precipitation
Types of Biomes:
Tropical Rainforest
Tropical Dry Forest
Tropical Grassland/Savanna/Scrubland
Desert
Temperate Grassland
Temperate Woodland and Shrubland
Temperate Forest
Northwestern Coniferous Forest
Boreal Forest/Taiga
Tundra
Polar Regions
Climatic Influence: Climate is a major determinant of the types of plants and animals that can survive in a particular biome.
Ex.
Tropical Rainforest: High temp + heavy year-round rainfall
Desert: High temp + low rainfall
Tundra: Cold temp + low precipitation
Impact of technology and anthropogenic changes to local and global environment and the dynamics of populations
Harvesting
Over-harvesting of resources can lead to population declines, habitat destruction, and ecosystem disruption.
Ex.overfishing, deforestation
Pollution
Air pollution
Climate Change, Acid Rain, Respiratory problems
Water Pollution
Contaminated drinking water, harms aquatic life
Soil Pollution
Degrades soil fertility and harms plant growth
Atmospheric changes
Climate changes
Caused by the release of greenhouse gasses from human activities
Such as carbon dioxide and methane
Impacts
Rising global temperatures
Changes in precipitation patterns
More frequent and severe weather events
Natural disasters(hurricanes, floods, volcanoes)
Some human activities can increase the impact of certain natural disasters
Ex. Deforestation can increase the risk of landslides
Heredity and Reproduction
How is Genetic information passed through Generations?
Genetic information is passed through generations using DNA, the genetic material that carries the instructions for the development and functioning of all living organisms.
Genomes
The complete set of genetic material found in an organisms
Understanding an organism's genome provides insights into its evolution, development, and disease susceptibility
DNA Structure and Relationship to Function
Structure
DNA is a double-stranded helix, composed of nucleotides.
Base Pairing
Adenine pairs with thymine, and Guanine pairs with cytosine.
Function
DNA stores the genetic information necessary for the development and functioning of all living organisms. It acts as a template for the synthesis of RNA, which in turn directs protein synthesis.