ACE Biology Notes

Learning Outcomes

  • Students will be able to describe cell characteristics and cell physiology.
  • Students will be able to describe the anatomy and physiology of musculo-skeletal, circulatory, nervous, endocrine, reproductive, digestive, and excretory (urinary) systems.
  • Students will be able to explain the role of the endocrine system and central nervous system in maintaining homeostasis.
  • Students will be able to characterize pathological conditions of the musculo-skeletal, circulatory, nervous, endocrine, reproductive, digestive, and excretory (urinary) systems.
  • Students will be able to apply principles of genetics to solve simple patterns of inheritance.
  • Students will be able to list the properties of pathogens in relation to human health.

Evaluation Plan

  • Unit quizzes (10) - 15%
  • Assignments (10) - 15%
  • Discussions / wiki entries (10) - 10%
  • Tests (3) - 60% (1x 15%, 1x 20%, 1x 25%)

Unit Timeline

  • Assignments: 15%
  • Quizzes: 15%
  • Discussions / Wiki: 10%
  • Tests: 60%

Important Topics

  • Anatomy and physiology - understand the difference
  • Levels of organization: organism, systems, organs, tissues, cells
  • Signs of life
  • Cell as a basic unit of a living matter
  • Organelles (the most important ones)
  • Cellular transport
  • Positive and negative feedback

Anatomy and Physiology

  • Anatomy: study of the structure of an organism and relationships of its parts (means “cutting apart”).
  • Physiology: study of the functions of living organisms and their parts (requires active experimentation).
  • Pathology: scientific study of disease (comes from pathos, the Greek word for "disease.")

Levels of Organization

  • Organization is the most important characteristic of body structure.
  • The body as a whole is a unit constructed of the following smaller units:
    • Atoms and molecules—chemical level
    • Cells—the smallest structural units; organizations of various chemicals
    • Tissues—organizations of similar cells
    • Organs—organizations of different kinds of tissues
    • Systems—organizations of many different kinds of organs
    • Organism – the highest level of organization

Levels of Organization

  • Gross levels
    • Atom
    • Molecule
    • Chemical level (Chapter 2)
  • Microscopic levels
    • Vesicles
    • Organelle levels (Chapter 3)
    • Neuron
    • Cellular level (Chapter 3)
    • Group of neurons and support cells
    • Tissue level (Chapter 4)
    • Brain
    • Organ level (Chapter 5)
  • Organ system level(Chapters 5-23)
    • Integumentary
    • Skeletal
    • Muscular
    • Cardiovascular
    • Endocrine
    • Reproductive
    • Urinary

Homeostasis

  • Survival of the individual and of the genes that make up the body is of the utmost importance
  • Survival depends on the maintenance or restoration of homeostasis (relative constancy of the internal environment)
  • The body uses negative feedback loops and, less often, positive feedback loops to maintain or restore homeostasis
  • Feedback loops involve a sensor, a control center, and an effector

Homeostasis

  • All organs function to maintain homeostasis
  • Ability to maintain balance of body functions is related to age: peak efficiency occurs during young adulthood; diminishing efficiency occurs after young adulthood

Homeostatic Control Loops

  • Most homeostatic control loops in the body involve negative feedback.

Temperature Regulation – an Example of Negative Feedback

  • An engineer’s diagram showing how relatively constant room temperature (controlled condition) can be maintained.
    • A thermostat (control center) receives feedback information from a thermometer (sensor) and responds by counteracting change from normal by activating a furnace (effector).
  • A physiologist’s diagram showing how a relatively constant body temperature (controlled condition) can be maintained.
    • The brain (control center) receives feedback information from nerve endings called cold receptors (sensors) and responds by counteracting a change from normal by activating shivering by muscles (effectors).

Positive Feedback

  • An example of positive feedback occurs when a baby is born.
  • As the baby is pushed from the womb (uterus) into the birth canal (vagina), stretch receptors detect the movement of the baby.
  • Stretch information is fed back to the brain, triggering oxytocin (OT) release.
  • OT travels through the bloodstream to the uterus, where it stimulates stronger contractions.
  • Stronger contractions push the baby farther along the birth canal, increasing stretch and stimulating the release of more OT.
  • Uterine contractions get stronger and stronger until the baby is pushed out of the body and the positive feedback is stopped.

Uterine Contraction - an Example of Positive Feedback

  • Variable: Stretch increase
  • Detected by Stretch receptors
  • Fetus moves into birth canal
  • Hypothalamus feeds information via nerve fibers back to brain
  • Correction signals via oxytocin
  • Uterine muscle effector
  • Stronger, more frequent labor contractions

Positive Feedback Loop Amplifies Change

  • Instead of opposing a change in the internal environment, positive feedback loop temporarily amplifies the change that is occurring.
  • Uterine contractions are an example of positive feedback loop.
  • Temperature regulation in the body is an example of negative feedback loop.

The Cell

Size and Shape

  • Human cells vary considerably in
    • An ovum has a diameter of 150150 micrometers.
    • A red blood cell has a diameter of 7.57.5 micrometers.
    • Size
    • All are microscopic
    • Cells differ notably in shape (flat, brick-shaped, threadlike, and irregular)
    • Cells perform all living functions: What are they? Example: eating, …..

Cell Composition

  • Cells contain cytoplasm—a substance found only in cells.
  • Organelles are specialized structures within the cytoplasm.
  • Cell interior is surrounded by a plasma membrane.
  • Encloses the cell and is a boundary

The Cell - Organelles

  • Nucleus
    • Nuclear envelope: membrane enclosing the nucleus. Protein-lined pores allow material to move in and out.
    • Chromatin: DNA plus associated proteins.
    • Nucleolus: condensed region where ribosomes are formed.
  • Peroxisome: metabolizes waste
  • Endoplasmic reticulum
    • Rough: associated with ribosomes; makes secretory and membrane proteins.
  • Cytoskeleton
    • Microtubules: form the mitotic spindle and maintain cell shape.
    • Centrosome: microtubule-organizing center.
    • Intermediate filaments: fibrous proteins that hold organelles in place.
    • Microfilaments: fibrous proteins; form the cellular cortex.
  • Vacuole
  • Plasma membrane
  • Lysosome: digests food and waste materials.
  • Golgi apparatus: modifies proteins.
  • Cytoplasm
  • Mitochondria: produce energy.

Organelles

  • Little organs within the cell
  • We will only talk about the most important ones

Plasma Membrane

  • Forms outer boundary of cell
  • Composed of a thin, two-layered membrane of phospholipids containing proteins
  • Is selectively permeable (does not allow everything to enter or leave the cell; it chooses what passes through)
  • It expands
  • It is not a uniform ‘fabric’

Cytoplasm and Ribosomes

  • Cytoplasm
    • Internal living material of cells
    • Fills space between plasma membrane and nucleus
    • Contains organelles—numerous small structures (little organs)
  • Ribosomes
    • May attach to rough endoplasmic reticulum (ER) or lie free in cytoplasm
    • Made of two tiny subunits of mostly ribosomal RNA
    • Manufacture enzymes and other protein compounds
    • Often called protein factories

Endoplasmic reticulum - ER

  • Network of connecting sacs and canals
  • Carry substances through fluid cytoplasm
  • Two types—rough and smooth
  • Rough ER collects, folds, and transports proteins made by ribosomes
  • Smooth ER synthesizes chemicals; makes new membrane

Golgi Apparatus and Mitochondria

  • Golgi Apparatus
    • Group of flattened sacs near the nucleus
    • Collect chemicals into vesicles that move from the smooth ER outward to plasma membrane
    • Called the chemical processing and packaging center
  • Mitochondria
    • Composed of inner and outer membranous sacks
    • Involved with energy-releasing chemical reactions
    • Contains one DNA molecule
    • Produce and store energy for the cell.

Nucleus

  • Surrounded by nuclear envelope
  • Made up of two separate membranes
  • Contains nuclear pores
  • Nucleolus
    • Dense region of nuclear material
  • Controls cell because it contains DNA, the genetic code—instructions for making proteins, which in turn determine cell structure and function
  • Component structures include nuclear envelope, nucleoplasm, nucleolus, and chromatin granules
  • DNA molecules become tightly coiled chromosomes during cell division
  • Each cell has 46 chromosomes in the nucleus

Flagella, Microvilli, and Cilia

  • Flagella
    • Single projections extending from cell surfaces
    • Much larger than cilia
    • “Tails” of sperm cells only example of flagella in humans
  • Microvilli
    • Small, fingerlike extensions of the plasma membrane
    • Increase absorptive surface area of the cell
  • Cilia
    • Fine, hairlike extensions found on free or exposed surfaces of some cells
    • Capable of moving in unison in a wavelike fashion

Centrosome

  • Region of cytoplasm near nucleus
  • Serves as microtubule-organizing center of cell
  • Centrioles found within centrosome
  • Paired organelles that lie at right angles to each other near the nucleus
  • Function in cell reproduction

Lysosomes

  • Membranous-walled organelles
  • Contain digestive enzymes
  • Have a protective function (eat microbes)
  • Formerly thought to be responsible for apoptosis (programmed cell death)

Cell Structure Matching

Group A

  • Cytoplasm: "Living matter"
  • Plasma membrane: Surrounds cells
  • Cholesterol: Component of plasma membrane
  • Nucleus: Controls reproduction of the cell
  • Centrioles: Paired organelles

Group B

  • Ribosomes: "Protein factories"
  • Endoplasmic reticulum: "Smooth and rough"
  • Mitochondria: "Power plants"
  • Lysosomes: "Digestive bags"
  • Golgi apparatus: "Chemical processing and packaging center"

Movements of Substances Through Cell Membranes

  • Passive transport processes
    • Do not require added energy
    • Result in movement “down a concentration gradient”
  • Diffusion
    • Substances scatter themselves evenly throughout an available space
    • It is unnecessary to add energy to the system
    • Movement is from high to low concentration

Osmosis and Dialysis

  • Osmosis and dialysis are specialized examples of diffusion across a selectively permeable membrane.
  • Osmosis is diffusion of water (when some solutes cannot cross the membrane).
  • Dialysis is diffusion of solutes.

Filtration

  • Movement of water and solutes caused by hydrostatic pressure on one side of membrane
  • Responsible for urine formation

Active Transport – Ion Pumps

  • Active transport processes occur only in living cells
  • Movement of substances is “up the concentration gradient”
  • Requires energy from adenosine triphosphate (ATP)
  • Ion pump: a protein complex in the cell membrane
  • Ion pumps use energy from ATP to move substances across cell membranes against their concentration gradients
  • Examples: sodium-potassium pump; calcium pump
  • Some work with other carriers
  • Phagocytosis and Pinocytosis
    • Both are active transport mechanisms because they require cell energy.
    • Phagocytosis is a protective mechanism often used to destroy bacteria.
    • Pinocytosis is used to incorporate fluids or dissolved substances into cells.

Cell Transport and Diseases

  • Cystic fibrosis, characterized by abnormally thick secretions in the airways and digestive ducts, results from failed ClCl^- transport.
  • Cholera is a bacterial infection that causes ClCl^- and water to leak from cells lining the intestines, resulting in severe diarrhea and water loss.
  • In cystic fibrosis, the absence of chloride ion pumps causes thickening of some glandular secretions. Because thickened secretions block airways and digestive ducts, children born with this disease become weakened, often dying before adulthood

Cell Division

  • Reproduction of cell involving division of the nucleus (mitosis) and the cytoplasm
  • Two daughter cells result from the division
  • Period when the cell is not actively dividing is called interphase
  • DNA replication—process by which each half of a DNA molecule becomes a whole molecule identical to the original DNA molecule; precedes mitosis Mitosis
  • Process in cell division that distributes identical chromosomes (DNA molecules) to each new cell formed when the original cell divides
  • Enables cells to reproduce their own kind
  • Makes heredity possible

Stages of Mitosis

  • Prophase
    • Chromatin granules become organized
    • Chromosomes (pairs of linked chromatids) appear
    • Centrioles move away from nucleus
    • Nuclear envelope disappears, freeing genetic material
    • Spindle fibers appear
  • Metaphase
    • Chromosomes align across center of cell
    • Spindle fibers attach themselves to each chromatid
  • Anaphase
    • Centromeres break apart
    • Separated chromatids now called chromosomes
    • Chromosomes are pulled to opposite ends of cell
    • Cleavage furrow develops at end of anaphase
  • Telophase
    • Cell division is completed
    • Nuclei appear in daughter cells
    • Nuclear envelope and nucleoli appear
    • Cytoplasm is divided (cytokinesis)
    • Daughter cells become fully functional

Recap

  • Levels of organization
  • Homeostasis
  • Negative and positive feedback
  • Cell organelles
  • Most important cell organelles
  • Cellular transport
  • Cell division