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Week 11, 15, 16 vocab

  • Alternative splicing
    A process by which a single gene can lead to multiple mRNA variants through the inclusion or exclusion of different exons.

  • Aminoacyl-tRNA synthetases
    Enzymes that attach the correct amino acid to its corresponding tRNA, enabling translation of mRNA into proteins.

  • Anticodon loop
    A region of tRNA that contains a three-nucleotide sequence complementary to a codon on mRNA, allowing for accurate translation.

  • A (aminoacyl) site
    The location on the ribosome where the aminoacyl-tRNA binds during protein synthesis.

  • Base substitution
    A type of mutation where one nucleotide in the DNA sequence is replaced by another, potentially altering the resulting protein.

  • 5′ cap
    A modified guanine nucleotide added to the 5′ end of eukaryotic mRNA that protects the mRNA from degradation and aids in ribosome binding.

  • Central dogma
    The framework describing the flow of genetic information from DNA to RNA to protein.

  • Charged tRNA
    A tRNA molecule that is linked to its corresponding amino acid, ready for incorporation into a growing polypeptide chain.

  • Chromatin-remodeling complexes
    Protein complexes that modify chromatin structure, allowing for access to DNA for transcription and replication.

  • Codon
    A three-nucleotide sequence in mRNA that specifies a particular amino acid or a stop signal during protein synthesis.

  • Copy number variation (CNV)
    Structural variations in the genome where sections of DNA are repeated, leading to differences in gene dosage.

  • Core polymerase
    The essential enzyme component of RNA polymerase responsible for synthesizing RNA from a DNA template.

  • DNA methylation
    The addition of methyl groups to DNA, typically affecting gene expression by repressing transcription.

  • Elongation factor
    Proteins that facilitate the elongation phase of translation or transcription by assisting the addition of nucleotides or amino acids.

  • E (exit) site
    The location on the ribosome where the empty tRNA, having released its amino acid, exits the ribosome.

  • Enhancers
    Regulatory DNA sequences that can significantly increase the transcription of specific genes from a distance.

  • Exons
    Coding regions of a gene that are retained in the final mRNA product after splicing.

  • Frameshift mutations
    Mutations caused by insertions or deletions of nucleotides that change the reading frame of the gene, often leading to nonfunctional proteins.

  • Genetic code
    The set of rules by which information encoded in mRNA is translated into proteins.

  • Helix-turn-helix motif
    A common structural motif in proteins that allows for binding to DNA, often found in transcription factors.

  • Holoenzyme
    The active form of an enzyme that includes the core enzyme plus any necessary cofactors or regulatory proteins.

  • Homeodomain
    A conserved protein domain that binds to DNA, often involved in regulating development and gene expression.

  • Initiation complex
    The assembly of mRNA, ribosomal subunits, and the initiator tRNA that begins the process of translation.

  • Introns
    Non-coding regions of a gene that are removed during RNA processing before translation.

  • Induction
    The process by which a molecule (inducer) increases gene expression, often by inhibiting a repressor.

  • Lac operon
    A set of genes in bacteria that are regulated together and are involved in the metabolism of lactose.

  • Lariat
    A loop structure formed during the splicing of introns from pre-mRNA.

  • Leucine zipper motif
    A structural motif in proteins that facilitates dimerization and DNA binding, characterized by repeating leucine residues.

  • Mature mRNA
    The final processed form of mRNA that contains only exons and is ready for translation.

  • Messenger RNA (mRNA)
    A type of RNA that carries genetic information from DNA to the ribosome, where proteins are synthesized.

  • Missense mutation
    A type of mutation that results in the substitution of one amino acid for another in a protein.

  • Negative control
    A regulatory mechanism in which a repressor protein inhibits gene expression.

  • Nonsense mutations
    Mutations that create a premature stop codon in a protein-coding sequence, leading to truncated proteins.

  • Operon
    A cluster of genes under the control of a single promoter, often involved in related metabolic pathways in prokaryotes.

  • Peptidyl transferase
    An enzymatic function of the ribosome that forms peptide bonds between amino acids during translation.

  • P (peptidyl) site
    The site on the ribosome where the tRNA carrying the growing polypeptide chain is located.

  • Point mutation
    A mutation that affects a single nucleotide in the DNA sequence, potentially altering the protein produced.

  • Positive control
    A regulatory mechanism in which an activator protein enhances gene expression.

  • Promoter
    A DNA sequence located upstream of a gene where RNA polymerase binds to initiate transcription.

  • Proteome
    The entire set of proteins expressed by a genome at a given time.

  • Regulatory proteins
    Proteins that control the rate of transcription of genetic information by binding to nearby DNA.

  • Repression
    The process by which gene expression is inhibited, often by repressor proteins binding to the promoter or other regulatory regions.

  • Ribosomal RNA (rRNA)
    The RNA component of ribosomes, crucial for protein synthesis.

  • Ribosome binding sequence (RBS)
    A sequence on mRNA that is recognized by ribosomes, facilitating the initiation of translation in prokaryotes.

  • RNA polymerase
    The enzyme responsible for synthesizing RNA from a DNA template during transcription.

  • RNA polymerase I, II, and III
    Different forms of RNA polymerase in eukaryotic cells, each responsible for synthesizing specific types of RNA.

  • RNA Pol I promoters
    Promoters that regulate the transcription of rRNA genes by RNA polymerase I.

  • RNA Pol II promoters
    Promoters that regulate the transcription of mRNA and some snRNA genes by RNA polymerase II.

  • RNA Pol III promoters
    Promoters that regulate the transcription of tRNA and rRNA genes by RNA polymerase III.

  • 3′ poly-A tail (Polyadenylation)
    A stretch of adenine nucleotides added to the 3′ end of eukaryotic mRNA, enhancing stability and translation.

  • Signal recognition particle RNA (SRP RNA)
    RNA that is part of the signal recognition particle, which targets proteins for secretion.

  • Silent mutation
    A mutation that does not change the amino acid sequence of a protein.

  • Small ribonucleoprotein particles (snRNPs)
    Complexes of RNA and protein that play a crucial role in splicing pre-mRNA.

  • Small nuclear RNA (snRNA)
    A class of RNA molecules that are involved in the splicing of pre-mRNA.

  • Small RNAs (miRNA and siRNA)
    Short RNA molecules that regulate gene expression by targeting mRNA for degradation or inhibition of translation.

  • Spliceosome
    A complex of snRNPs and proteins that catalyzes the splicing of introns from pre-mRNA.

  • Start site
    The nucleotide in the DNA where transcription begins.

  • Terminator
    A sequence in DNA that signals the end of transcription.

  • Transcription
    The process by which RNA is synthesized from a DNA template.

  • Transcription unit
    The segment of DNA that is transcribed into RNA.

  • Transcriptome
    The complete set of RNA transcripts produced by the genome at a given time.

  • Transfer RNA (tRNA)
    The type of RNA that carries amino acids to the ribosome during protein synthesis.

  • Translation
    The process of synthesizing a protein from mRNA.

  • Triplet repeat mutation
    A mutation characterized by the expansion of a repeat sequence of three nucleotides in a gene.

  • Wobble pairing
    A concept explaining how certain tRNA anticodon nucleotides can pair with more than one codon due to flexible base pairing.

  • Zinc finger motif
    A protein structure that binds to DNA, typically involved in transcription regulation.

  • TFIID = transcription factor RNA polymerase II
    A multi-subunit protein complex that plays a crucial role in the initiation of transcription by RNA polymerase II.

  • Posttranscriptional regulation
    The control of gene expression at the RNA level after transcription has occurred.

JV

Week 11, 15, 16 vocab

  • Alternative splicing
    A process by which a single gene can lead to multiple mRNA variants through the inclusion or exclusion of different exons.

  • Aminoacyl-tRNA synthetases
    Enzymes that attach the correct amino acid to its corresponding tRNA, enabling translation of mRNA into proteins.

  • Anticodon loop
    A region of tRNA that contains a three-nucleotide sequence complementary to a codon on mRNA, allowing for accurate translation.

  • A (aminoacyl) site
    The location on the ribosome where the aminoacyl-tRNA binds during protein synthesis.

  • Base substitution
    A type of mutation where one nucleotide in the DNA sequence is replaced by another, potentially altering the resulting protein.

  • 5′ cap
    A modified guanine nucleotide added to the 5′ end of eukaryotic mRNA that protects the mRNA from degradation and aids in ribosome binding.

  • Central dogma
    The framework describing the flow of genetic information from DNA to RNA to protein.

  • Charged tRNA
    A tRNA molecule that is linked to its corresponding amino acid, ready for incorporation into a growing polypeptide chain.

  • Chromatin-remodeling complexes
    Protein complexes that modify chromatin structure, allowing for access to DNA for transcription and replication.

  • Codon
    A three-nucleotide sequence in mRNA that specifies a particular amino acid or a stop signal during protein synthesis.

  • Copy number variation (CNV)
    Structural variations in the genome where sections of DNA are repeated, leading to differences in gene dosage.

  • Core polymerase
    The essential enzyme component of RNA polymerase responsible for synthesizing RNA from a DNA template.

  • DNA methylation
    The addition of methyl groups to DNA, typically affecting gene expression by repressing transcription.

  • Elongation factor
    Proteins that facilitate the elongation phase of translation or transcription by assisting the addition of nucleotides or amino acids.

  • E (exit) site
    The location on the ribosome where the empty tRNA, having released its amino acid, exits the ribosome.

  • Enhancers
    Regulatory DNA sequences that can significantly increase the transcription of specific genes from a distance.

  • Exons
    Coding regions of a gene that are retained in the final mRNA product after splicing.

  • Frameshift mutations
    Mutations caused by insertions or deletions of nucleotides that change the reading frame of the gene, often leading to nonfunctional proteins.

  • Genetic code
    The set of rules by which information encoded in mRNA is translated into proteins.

  • Helix-turn-helix motif
    A common structural motif in proteins that allows for binding to DNA, often found in transcription factors.

  • Holoenzyme
    The active form of an enzyme that includes the core enzyme plus any necessary cofactors or regulatory proteins.

  • Homeodomain
    A conserved protein domain that binds to DNA, often involved in regulating development and gene expression.

  • Initiation complex
    The assembly of mRNA, ribosomal subunits, and the initiator tRNA that begins the process of translation.

  • Introns
    Non-coding regions of a gene that are removed during RNA processing before translation.

  • Induction
    The process by which a molecule (inducer) increases gene expression, often by inhibiting a repressor.

  • Lac operon
    A set of genes in bacteria that are regulated together and are involved in the metabolism of lactose.

  • Lariat
    A loop structure formed during the splicing of introns from pre-mRNA.

  • Leucine zipper motif
    A structural motif in proteins that facilitates dimerization and DNA binding, characterized by repeating leucine residues.

  • Mature mRNA
    The final processed form of mRNA that contains only exons and is ready for translation.

  • Messenger RNA (mRNA)
    A type of RNA that carries genetic information from DNA to the ribosome, where proteins are synthesized.

  • Missense mutation
    A type of mutation that results in the substitution of one amino acid for another in a protein.

  • Negative control
    A regulatory mechanism in which a repressor protein inhibits gene expression.

  • Nonsense mutations
    Mutations that create a premature stop codon in a protein-coding sequence, leading to truncated proteins.

  • Operon
    A cluster of genes under the control of a single promoter, often involved in related metabolic pathways in prokaryotes.

  • Peptidyl transferase
    An enzymatic function of the ribosome that forms peptide bonds between amino acids during translation.

  • P (peptidyl) site
    The site on the ribosome where the tRNA carrying the growing polypeptide chain is located.

  • Point mutation
    A mutation that affects a single nucleotide in the DNA sequence, potentially altering the protein produced.

  • Positive control
    A regulatory mechanism in which an activator protein enhances gene expression.

  • Promoter
    A DNA sequence located upstream of a gene where RNA polymerase binds to initiate transcription.

  • Proteome
    The entire set of proteins expressed by a genome at a given time.

  • Regulatory proteins
    Proteins that control the rate of transcription of genetic information by binding to nearby DNA.

  • Repression
    The process by which gene expression is inhibited, often by repressor proteins binding to the promoter or other regulatory regions.

  • Ribosomal RNA (rRNA)
    The RNA component of ribosomes, crucial for protein synthesis.

  • Ribosome binding sequence (RBS)
    A sequence on mRNA that is recognized by ribosomes, facilitating the initiation of translation in prokaryotes.

  • RNA polymerase
    The enzyme responsible for synthesizing RNA from a DNA template during transcription.

  • RNA polymerase I, II, and III
    Different forms of RNA polymerase in eukaryotic cells, each responsible for synthesizing specific types of RNA.

  • RNA Pol I promoters
    Promoters that regulate the transcription of rRNA genes by RNA polymerase I.

  • RNA Pol II promoters
    Promoters that regulate the transcription of mRNA and some snRNA genes by RNA polymerase II.

  • RNA Pol III promoters
    Promoters that regulate the transcription of tRNA and rRNA genes by RNA polymerase III.

  • 3′ poly-A tail (Polyadenylation)
    A stretch of adenine nucleotides added to the 3′ end of eukaryotic mRNA, enhancing stability and translation.

  • Signal recognition particle RNA (SRP RNA)
    RNA that is part of the signal recognition particle, which targets proteins for secretion.

  • Silent mutation
    A mutation that does not change the amino acid sequence of a protein.

  • Small ribonucleoprotein particles (snRNPs)
    Complexes of RNA and protein that play a crucial role in splicing pre-mRNA.

  • Small nuclear RNA (snRNA)
    A class of RNA molecules that are involved in the splicing of pre-mRNA.

  • Small RNAs (miRNA and siRNA)
    Short RNA molecules that regulate gene expression by targeting mRNA for degradation or inhibition of translation.

  • Spliceosome
    A complex of snRNPs and proteins that catalyzes the splicing of introns from pre-mRNA.

  • Start site
    The nucleotide in the DNA where transcription begins.

  • Terminator
    A sequence in DNA that signals the end of transcription.

  • Transcription
    The process by which RNA is synthesized from a DNA template.

  • Transcription unit
    The segment of DNA that is transcribed into RNA.

  • Transcriptome
    The complete set of RNA transcripts produced by the genome at a given time.

  • Transfer RNA (tRNA)
    The type of RNA that carries amino acids to the ribosome during protein synthesis.

  • Translation
    The process of synthesizing a protein from mRNA.

  • Triplet repeat mutation
    A mutation characterized by the expansion of a repeat sequence of three nucleotides in a gene.

  • Wobble pairing
    A concept explaining how certain tRNA anticodon nucleotides can pair with more than one codon due to flexible base pairing.

  • Zinc finger motif
    A protein structure that binds to DNA, typically involved in transcription regulation.

  • TFIID = transcription factor RNA polymerase II
    A multi-subunit protein complex that plays a crucial role in the initiation of transcription by RNA polymerase II.

  • Posttranscriptional regulation
    The control of gene expression at the RNA level after transcription has occurred.

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