Definition: Elongated shapes with repeating units, forming fibrous structures.
Examples: Collagen and keratin.
Role: Mechanical support, strength, and stability to tissues and organs (e.g., collagen in tendons, ligaments, and skin).
Globular Proteins (Functional Proteins):
Definition: Compact, spherical shape.
Examples: Enzymes, antibodies, and hormones.
Role: Biological processes and specific functions (e.g., enzymes as catalysts, antibodies in the immune system, and hormones as chemical messengers).
Protein Functions and Sources
Functions:
Build-up and repair of muscles and other cells.
Build enzymes
Not usually for energy, UNLESS starving.
Sources: Chicken, legumes, eggs.
Nucleotides
Made up of:
Simple sugar (ribose or deoxyribose).
Phosphate group.
Nitrogenous base (adenine, thymine, cytosine, guanine, uracil).
Used for DNA and RNA, and:
ATP (adenosine triphosphate) and ADP (adenosine diphosphate).
NAD
FAD
Enzymes: Biological Catalysts
Protein in nature.
Biological catalysts that speed up reactions.
Not used up during reaction, can be reused.
Substrate specific.
Temperature and pH sensitive.
Lock-and-Key Mechanism
Substrate enters the active site of the enzyme.
Reaction occurs and product forms, creating an enzyme-substrate complex.
Product detaches from the enzyme.
Enzyme shape unchanged, can be reused.
Enzymes can both breakdown (catalyse) and build up (anabolise) substances.
Induced Fit Model
Similar to lock-and-key, but suggests enzyme shape is not fixed.
Enzyme can accept substrates with similar shapes.
More applicable for inhibitors.
Inhibitors
Substances that fit in the active site or allosteric site, or change enzyme function.
Types:
Non-specific inhibitors: Affect all enzymes by denaturing them (e.g., high temperature, extreme pH).
Competitive inhibitors: Similar shape to the substrate, enter the active site but usually no reaction occurs. Removed on its own, enzyme works normally.
Non-competitive inhibitors: Attach to the allosteric site, change the active site shape, preventing substrate binding. Usually reversible.
Those that bind permanently to the enzyme’s active site
Those that attach to the enzyme, change its shape permanently, detach themselves and move on to other enzymes.
Factors Affecting Enzyme Reaction Rate
Temperature:
Higher temperature means more kinetic energy.
Substrate enters active site by chance; faster movement increases chances.
Low temperature = slow rate; increased temperature = higher rate (doubles with every 10°C increase).
Optimum temperature = fastest rate.
Beyond optimum temperature = denaturation and rate slows down/stops.
pH:
Enzymes work best at a specific pH.
Deviation from optimum pH causes denaturation and slower reaction rate.
Substrate concentration:
Higher concentration = faster rate, but only until saturation point (all active sites occupied).
Rate levels off and remains constant once saturated.
Enzyme concentration:
Higher enzyme count equates to a quicker reaction rate
Enzyme Uses
Biological washing powders: Fast stain removal, enzymes are reusable, work at low temperatures.
Making juices: Cellulase breaks down plant cell walls, amylase breaks down starch for sweetness.
Breathing and Gas Exchange
Unicellular organisms: gases exchange by diffusion due to large SA:V ratio.
Larger organisms: Dedicated gas exchange system needed.
Gas exchange occurs across a respiratory surface.
Respiration: Reaction where glucose is broken down to release energy.
Respiratory system: Lungs/gills, where gases are exchanged.
Efficient respiratory surface needs:
Large surface area.
Thin permeable surface.
Moist exchange surface -- gases must dissolve in water before exchanging.
Alveoli adaptations:
Large network of capillaries that bring CO2 to be removed and take away oxygen, keeping a high concentration gradient.
Movement of Air into the Lungs
Air enters through the nose and mouth.
Moves down the trachea.
Divides into two bronchi (one for each lung).
Each bronchus divides into smaller bronchioles.
Bronchioles end in alveoli.
Specialized cells for infection prevention:
Goblet cells: They produce mucus that traps dust, pathogens, etc
Epithelial cells have tiny hairs called cilia, which move the mucus around (to the nose to be sneezed out, or towards the stomach).
The Process of Breathing – Ventilation
Breathing in / inhaling / inspiration:
Intercostal muscles contract, moving the ribcage upward and outwards.
Diaphragm contacts pushing organs in abdomen down
Increase volumne and decreases pressure
Air moves into the lungs.
Breathing out / exhaling / expiration:
Intercostal muscles relax and the ribcage moves down.
Diaphragm relaxes and is pushed back up by the organs in the abdomen
Decrease volume and increase pressure
Air moves out of the lungs.
The pleural cavity is a thin space betweent the lungs and the ribs, filled with a special fluid callled the pleura, that acts as a lubricant and prevents friction and pain every time the lungs move against the ribs.
Ventilation is the process by which air is inhaled and exhaled.
Gas exchange is process of gases moving in and out across a respiratory surface
Respiration is the breakdown of glucose to produce energy.
Diseases of the Lungs
Air in through the nose and mouth contains dust, debris, pollen, pathogens, etc.
Cars have catalytic converters factories have special plates in their chimneys -> limit pollutants from the burning of fossil fules from being spread.
As air enters through the nose and mouth:
Nose hairs stop larger particles that go furtjer in.
Mucus traps other particles since it is sticky. The mucous is then moved upwards to be sneezed out or diverted to the stomach.
Smaller particles, including viruses, may not be captured by these mechanisms and thus they man end up in the lungs, causing irritation and disease.
Effects of Smoking
Cigarettes contain a lot of harmful substances and are carrocinogenic (cause cancer).
Carbon Monoxide:
Binds to haemoglobin (red pigment found in red blood cells, used to transport oxygen).
This prevents oxygen from being carried, making the red blood cell useless, therefore causing person to be fatuged, tired, out of breath etc.
Nicotine:
One of the addictive substances in cigarettes.
Increases heart rate and blood pressure and decreases the flexibility of blood pressure and decreases the flexibility of the blood vessels, therefore causing cardiovascular problems such as stroke, heart attack haemorrhage etc.
Tar:
Sticky substance that prevents lungs from inflating properly
Also stops the beating of cilia in epithelial cells.
This means that the muscus reduced by the goblet cells is not moved around, and pools in the lungs The lungs are warm and moist, which means bacteria can grow very quickly in the accumulated mucus.
Emphysema
Condition where the alveoli become damaged, usually due to repeated infections, however it can also happen due to disease.
The walls of the alveoli become weaker as white blood cells attack the pathogens, and eventually the walls break down.
This reduces the surface area for gas exchang, leading to shortness of breath.
Cystic Fibrosis
Inherited disorder where the patient produces thick mucus that is very difficult to remove.
This causes repeated infections and difficulty with breathing as the lungs don’t expand properly.
Nutrition
Nutrition refers to the intake of food. There are two types of nutrition:
Heterotrophic - organisms that need to find their own food.
Autotrophic - organisms that are able to make their own food.
Plant Nutrition
Most plants are able to make their own food by a process called photosynthesis.
The chemical and word Equations are:
Word Equation: Carbon dioxide + water light Glucose + oxygen
Chemical Equation: 6CO2 + 6H2O light C6H12O6 + 6O2
Leaf Structure and Function
Cuticle: the Cuticule is a layer of wax to slow down water loss
Upper epidermis – secrete thin waxy layer, and contains the guard cells.
Palisade mesophyll: Thightly packed and full of chlorophyll to perform photosynthesis
Spongy Mesophyll: is irregulary shaped s they have a large surface area for gas exchanging gases.
Lower epidermis – that secrete thin waxy layer, and contains the guard cells.
Guard cells: a pore that allows the entry and exit of gasses
Stomata: – a pore that allows the entry and exit of gases
Airspace: – allows for a steep concentration gradient for gas exchange
Vascular bundle – Contians the xylem and phloem, which transport water and minerals, and the products of photosynthesis respectfully.
Leaves have several adaptians to perform more efficent photosynthesis:
Leaves contian a lot of chloraply, the green pigment needed for photosynthesis
Leaves are usually brad for more light absortion and the stams provide support
Waxy cuticle to prevent water loss
Leaves arte usually thin , for more efficient gas exchange
Suplied with a large number of veins that provide water and take away the products of photosynethis . We find two types of scasular tissue: xylem which transport water; pholem swuch trasport product of photosynthesis.
Leaves also contian accessory pigments, which allow for a wider rande of light to be absorbed, and therefore making photosynthesis more efficient.
Photosynthesis
Process by which organisms (especially plants) make their own food using
Carbon Dioxide
Water
Light
Two parts
Light-Dependent Reaction
Light-Independent Reaction
Light dependent: Light becomes excirted ( electron) and release energy
Light energy hits atoms of chlorophyll, causing electrons to excite and jump to the next shell.
When electrons move back down, they release energy used to:
Create ATP from ADP + P
Create NADPH from NADP + H
Split water, where oxygen is a waste product, while the hydrogen is bonded to NADP
Light-Independent Reaction
The light products from the light-dependent reaction used to create the light reaction
ATP is broken down into ADP & P,which releases energy
NADPH is broken down in the NADP + H, which releases heat also release the energy, that's going to used to bond together to the H to carbon dioxide = to C6H12O6 (glucose).
Phosphorus :Needed for - formation, ATP formation.
Sources - Softened bones.
Iron: Mineral; haemoglobin formation.
Deficiency: anemia.
Sources: red meat, legumes, green veg.
Digestion: process for break down of molecules to manageable ones that are usable by body
All throughout the alimentary canal(from the mouth to the anus)-
-Peristalses that are wave-like muscular contractions, that help he food/ waste to move along.
-Mucus , acts like lubricant and helps the food/waste to move to move.
How it works
Mouth: through the mouth it enters the body and break down occurs physically and with enzymes to swollow the substances in small pieces
-phscal or mechanicat- Occurs but be teeth.
It increases more surface area for efficent enzymes, helps to easier to swallow food with toungue help.
-chemicaat- Occurs by enzymes, specifically salivary amylase, which breaks down starch and maltose.
Stomach
Releases stomach to lower pH to 2, then enzymes, such as Pepsin with Digestive Juices get released.The Mucus is secreted to prevent self diegest.
The main purpose of the stomach is to digest food, by breaking down large food molecules into smaller ones, creating a soup-like mixture called chyme. This is then slowly released into the small intestine.
The stomach releases three important substances:
Stomach acid (hydrochloric acid) to lower the ph to 2
Enzymes, such as pepsin which breaks down protein
Digestive juices
A layer of mucus is secreted by specialised cells in the stomach to prevent self-digestion.
Certain substances are absorbed immediately by the stomach:
Water
Glucose
Alcohol
<liCertain drugs
Small Intestine
Small Intestine: 1) to finish the digestion 2) to continue obsorption. Made up of three parts: Duodenum, jejunum, Lileum
Small intestine plays 2 roles
* -To finish digestion
-To continue absorbtion.
The first part of the small instestine in known as the duodenum, whihc this is concerment wuth finishing of digestion. Three substanes are released.
* Pancreatic juices: Contains different enzymes to finish digestion. Some enzymes can include- pancreatic amylase, maltase, sucrase, lipase. etc.
odium bycarbinase: Produced by the pancreas that natrilisez, the acidity of the food that it is coming from the to the stomach
Bile: Produced by the Liver and stored in the Gall bladder- It emulsifies that which Means that large fat gobalas is bracken down into smaller flat globules, for lipas to work more efficently. that louers the pH to 3 Fatty acids and Glycerol to work.
The final part of a salll intestine is called the ilenum, and this is responsible absorption of food
Small Intestine Adaptations for Efficient Absorption
Very long: Food has more time to be absorbed.
Villi and microvilli: Increase surface area for absorption.
Villi are one-cell thick: Shorter distance means faster absorption.
Large number of blood vessels and lacteals: Maintain high concentration gradient and maximize efficiency.
Function of the Large Intestine:
The main function of the large intestine is to absorb: Water, mineral ions and vitamins that it receives from with the undistages wastefrom the ileum
Once there final substances have been obsorbed, the faeces will pass trough the colon and reach the rectum ,where they will be temporyaly stored , then move out there anus by peristalis.
Un digestable material is made up mostly with Plant material known as rouphage. This is extremley important since it prevent consipation.
In cases of dirria, the indigested material doesn't spend enough thume, to the the H20 to be obsorbed, meing that woory fasses are produecd
The pancreas:
produces many diffrent enzymes that are secrected in to the duodemun to compleat digestion
Produce soidum bycarbinate with this alkaline ph- and helps with the digestad substeances.
- produce two very Important hormones -insulin and glucagon helps with the regulation of blood, Blood levels.
The liver:
* Production of bile that is use to help help wht the fats more easier, then more smaller fat globlus
* - the liver contras Blood sugar levels- The stores excess of glucose as glacogen trough the adtion of insulin. Conerts glocgan bacl with glucose b.
Fate of Glucose in the Liver
Used Immediately For Energy With The Breakdown of Respiration
-Stored as glycogen = Converted to fat
Used in other reaction such as by as the production or Intermidiate
Respiration: process by which glucose is broken for released energy ( in the fourm of ATP)
Respirations can be found it this format: Aerobic( breakdown is using oxygen) Anaerobic (The brack is without usiong oxygen)