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Chapter 04 Lecture Outline

  • Introduction
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4.1 Metabolic Reactions

  • Metabolism: The sum of all chemical reactions occurring in the body.
  • Cellular Metabolism: The sum of all chemical reactions occurring in a cell; metabolic reactions typically occur in pathways or cycles.
  • Types of Metabolic Reactions:
    • Anabolism:
    • Definition: The process in which small molecules are built into larger ones.
    • Energy Requirement: Requires energy, specifically ATP produced during catabolism.
    • Example: Dehydration synthesis:
      • Small molecules combine to form larger molecules, resulting in the production of water (H2OH_2O).
      • Used to create polysaccharides, proteins, and triglycerides.
    • Catabolism:
    • Definition: The process in which larger molecules are broken down into smaller ones.
    • Energy Release: Releases energy in the form of ATP.
    • Example: Hydrolysis:
      • Used to decompose carbohydrates, proteins, and lipids.
      • Involves the use of water to split these complex substances.
      • It acts as the reverse process of dehydration synthesis.

4.2 Control of Metabolic Reactions

  • Overview: All cells perform both catabolic and anabolic reactions.
  • Importance of Regulation:
    • Catabolic and anabolic processes must be carefully controlled to prevent imbalances that can damage or kill a cell.
  • Enzymes:
    • Role: Control the rates of both anabolic and catabolic reactions, significantly increasing reaction rates.

Enzyme Action

  • Enzymes (Protein Catalysts):
    • Description: Globular proteins that catalyze specific reactions.
    • Functions:
    • Increase the rate of chemical reactions.
    • Lower the activation energy required to start reactions.
    • Are not consumed in the reactions, allowing for repeated use.
    • Specificity: Each enzyme is specific to a particular substrate based on the shape of its active site.
    • Naming Convention: Many enzymes are named after their substrate with the suffix “-ase” (e.g., lipase breaks down lipids).

Enzymes and Metabolic Pathways

  • Metabolic Pathways:
    • Definition: Series of enzyme-controlled reactions leading to the formation of a product.
    • Characteristics: Each new substrate is the product of the previous reaction and each step is catalyzed by a different enzyme.
  • Rate-Limiting Enzyme:
    • Definition: A regulatory enzyme that catalyzes one step of the pathway and typically sets the rate for the entire reaction sequence.
    • Characteristics:
    • The number of molecules of this enzyme is limited.
    • Often is the first enzyme in the reaction sequence.
    • In some pathways, the end product inhibits the rate-limiting enzyme, exemplifying negative feedback.

Factors That Alter Enzymes

  • Cofactor:
    • Definition: A non-protein substance that combines with an enzyme to activate it.
    • Functions:
    • Aids in folding the active site into the proper shape.
    • Assists in binding the enzyme to its substrate.
    • Types: Can be ions, elements, or small organic molecules (coenzymes).
  • Coenzyme:
    • Definition: An organic molecule that acts as a cofactor, mostly derived from vitamins.
  • Denaturation:
    • Definition: The inactivation of an enzyme or any other protein due to an irreversible change in its conformation, resulting in an inability to bind to its substrate.

Clinical Application 4.1: Inborn Errors of Metabolism

  • Concept: A deficient or absent enzyme blocks the metabolic pathway that it catalyzes.
  • Consequence: Results in the accumulation of the enzyme's substrate and a deficiency of its product.
  • Example: Phenylketonuria (PKU):
    • Condition: A missing or nonfunctional enzyme blocks the conversion of amino acid phenylalanine into tyrosine.
    • Effect: Excess phenylalanine can poison the brain.
    • Treatment: Managed with a special diet.

4.3 Energy for Metabolic Reactions

  • Energy:
    • Definition: The capacity to change something or the ability to do work.
    • Forms: Heat, light, sound, electrical energy, mechanical energy, and chemical energy.
    • Principle: Energy cannot be created or destroyed but can be transformed from one form to another.
  • Cellular Respiration:
    • Definition: Process that transfers energy from molecules and makes it available for cellular use.
    • Note: Most metabolic reactions utilize chemical energy.

Release of Chemical Energy

  • Chemical Energy Storage: Many metabolic processes require energy stored in ATP.
  • Energy Release:
    • Energy is held in chemical bonds and is released when these bonds are broken.
  • Oxidation:
    • Definition: The process through which energy is released from glucose and similar molecules via the loss of hydrogen atoms and their electrons.
    • Enzyme Role: Enzymes lower the activation energy needed for oxidation in cellular respiration reactions.
  • Energy Transfer to ATP:
    • Distribution: 40% as chemical energy and 60% as heat (maintains body temperature).

ATP Molecules 1

  • ATP (Adenosine Triphosphate):
    • Definition: A molecule that carries energy in a form that the cell can use.
    • Function: It is the main energy-carrying molecule in the cell. Energy from ATP breakdown is used for cellular work.
    • Structure: Composed of 3 portions:
    • Adenine
    • Ribose (a sugar)
    • 3 phosphate groups in a chain.
    • The second and third phosphates are linked by high-energy bonds, allowing for quick energy transfer to other molecules.

ATP Molecules 2

  • ADP (Adenosine Diphosphate):
    • Definition: Formed when ATP loses a terminal phosphate.
    • Conversion: Can be converted back into ATP by attaching a third phosphate, a process called phosphorylation.
    • Energy Source: Phosphorylation requires energy from cellular respiration.
    • Energy Cycle: ATP and ADP continuously cycle between cellular respiration and energy-utilizing reactions.

4.4 Cellular Respiration 1

  • Overview of Cellular Respiration:
    • The cellular respiration of glucose occurs through 3 interconnected reaction sequences:
    1. Glycolysis (Anaerobic):
      • First reaction sequence, breaking down glucose (6-carbon) into 2 pyruvic acid (3-carbon) molecules.
    2. Citric Acid Cycle (Aerobic)
      • Series of aerobic reactions involved after glycolysis.
    3. Electron Transport Chain/Oxidative Phosphorylation (Aerobic)
      • Final aerobic phase that produces a significant amount of ATP.
  • Characterization:
    • Glycolysis and the Electron Transport Chain consist of stepwise reaction sequences.
    • The Citric Acid Cycle involves a metabolic cycle where the final product reacts to replenish the original substrate.

Process of Cellular Respiration

  • Inputs Required: A supply of glucose and O2 are necessary for cellular respiration of glucose.
  • Final Products:
    • Carbon dioxide (CO2)
    • Water (H2O)
    • ATP (40% chemical energy)
    • Heat (60% as thermal energy).
  • Types of Reactions:
    • Anaerobic reactions: Do not require O2 and yield little ATP.
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