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Enzymes: Proteins and Catalysts
Enzymes are proteins that function as catalysts in biochemical reactions.
Definition of Catalyst: A catalyst is a substance that increases the rate of a reaction without being consumed in the process. At the end of the reaction, the enzyme remains unchanged and can catalyze subsequent reactions.
Enzymatic reactions can occur in a series or cascade involving multiple steps and enzymes.
Example: Starting molecule A catalyzed to product D through intermediates B and C by specific enzymes.
Metabolism and Enzymatic Reactions
Metabolism: The totality of enzymatic reactions in the cell, often linked to perform efficiently to produce necessary products.
Enzymes play crucial roles in cellular processes by converting substrates (the material an enzyme acts upon) to products.
The substrate must bind to the enzyme's active site, forming an enzyme-substrate complex.
Definition of Active Site: The specific region on an enzyme where the substrate binds.
Hydrolysis Reaction: In some reactions, like the breakdown of sucrose into glucose and fructose by sucrase, water is involved in breaking bonds.
Mechanism of Enzyme Action
Enzymes work by reducing the energy of activation needed for a reaction to occur.
Energy of Activation: The minimum energy required for a chemical reaction to start.
Induced Fit Theory: This replaces the lock-and-key model, noting that the enzyme changes shape to accommodate substrate binding, enhancing the reaction's efficiency.
Interactions Within the Active Site
Substrates bind to the active site through non-covalent and sometimes covalent interactions, including:
Hydrogen Bonds: Weak interactions contributing to the binding of substrates.
Ionic Bonds: Occur between charged R groups of amino acids in the active site.
Covalent Bonds: Can form temporarily during the reaction but must be broken afterwards.
Enzymes and Energy Considerations
Enzymes allow biochemical reactions to occur under conditions that minimize temperature increase to avoid cellular damage.
E.g., 42°C can be damage for human cells; enzymes can lower the activation energy necessary for reactions.
Factors Affecting Enzyme Activity
Environmental Conditions: Temperature and pH can significantly influence enzyme function.
Human enzymes generally function optimally at around 37°C and specific pH levels:
Pepsin (stomach enzyme): Optimal at pH 2.
Trypsin (intestinal enzyme): Optimal at pH 8.
Cofactors and Coenzymes: Additional non-protein molecules that assist enzyme function.
Definition of Cofactors: Inorganic ions or organic molecules that support enzyme activity.
Inhibitors: Molecules that decrease enzyme activity by binding to them.
Types of Inhibitors:
Competitive Inhibitors: Bind directly to the active site, preventing substrate binding.
Non-competitive Inhibitors: Bind to a site other than the active site, inducing a conformational change that inhibits enzyme function.
Allosteric Regulation
Allosteric Sites: Sites other than the active site where regulatory molecules can bind, influencing enzyme activity.
Definition of Allosteric Regulation: The process whereby the binding of a molecule at one site affects the activity at another site of the enzyme.
Both inhibitors and activators can bind to allosteric sites, enhancing or inhibiting enzyme activity.
Feedback Inhibition
Definition of Feedback Inhibition: A process where the final product of an enzymatic pathway inhibits an earlier step in the pathway, regulating substrate use.
Example: Isoleucine binding to threonine deaminase to prevent further conversion of threonine when enough isoleucine is present.
Multi-Enzyme Complexes
Enzymes may function in groups, forming multi-enzyme complexes, which allow for efficiency in metabolic processes.
Example: Citric acid cycle enzymes within the mitochondrial matrix work closely together.
Proenzymes and Activation Mechanisms
Enzymes can be synthesized as inactive precursors known as proenzymes or zymogens.
These require the removal of a specific peptide segment to become active; this often involves proteolytic cleavage by proteases.
Example: Caspases are proenzymes that become active during apoptosis (programmed cell death).