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Enzymes: Proteins and Catalysts

  • Enzymes are proteins that function as catalysts in biochemical reactions.

    • Definition of Catalyst: A catalyst is a substance that increases the rate of a reaction without being consumed in the process. At the end of the reaction, the enzyme remains unchanged and can catalyze subsequent reactions.

  • Enzymatic reactions can occur in a series or cascade involving multiple steps and enzymes.

    • Example: Starting molecule A catalyzed to product D through intermediates B and C by specific enzymes.

Metabolism and Enzymatic Reactions

  • Metabolism: The totality of enzymatic reactions in the cell, often linked to perform efficiently to produce necessary products.

    • Enzymes play crucial roles in cellular processes by converting substrates (the material an enzyme acts upon) to products.

  • The substrate must bind to the enzyme's active site, forming an enzyme-substrate complex.

    • Definition of Active Site: The specific region on an enzyme where the substrate binds.

    • Hydrolysis Reaction: In some reactions, like the breakdown of sucrose into glucose and fructose by sucrase, water is involved in breaking bonds.

Mechanism of Enzyme Action

  • Enzymes work by reducing the energy of activation needed for a reaction to occur.

    • Energy of Activation: The minimum energy required for a chemical reaction to start.

  • Induced Fit Theory: This replaces the lock-and-key model, noting that the enzyme changes shape to accommodate substrate binding, enhancing the reaction's efficiency.

Interactions Within the Active Site

  • Substrates bind to the active site through non-covalent and sometimes covalent interactions, including:

    • Hydrogen Bonds: Weak interactions contributing to the binding of substrates.

    • Ionic Bonds: Occur between charged R groups of amino acids in the active site.

    • Covalent Bonds: Can form temporarily during the reaction but must be broken afterwards.

Enzymes and Energy Considerations

  • Enzymes allow biochemical reactions to occur under conditions that minimize temperature increase to avoid cellular damage.

    • E.g., 42°C can be damage for human cells; enzymes can lower the activation energy necessary for reactions.

Factors Affecting Enzyme Activity

  • Environmental Conditions: Temperature and pH can significantly influence enzyme function.

    • Human enzymes generally function optimally at around 37°C and specific pH levels:

    • Pepsin (stomach enzyme): Optimal at pH 2.

    • Trypsin (intestinal enzyme): Optimal at pH 8.

  • Cofactors and Coenzymes: Additional non-protein molecules that assist enzyme function.

    • Definition of Cofactors: Inorganic ions or organic molecules that support enzyme activity.

  • Inhibitors: Molecules that decrease enzyme activity by binding to them.

    • Types of Inhibitors:

    • Competitive Inhibitors: Bind directly to the active site, preventing substrate binding.

    • Non-competitive Inhibitors: Bind to a site other than the active site, inducing a conformational change that inhibits enzyme function.

Allosteric Regulation

  • Allosteric Sites: Sites other than the active site where regulatory molecules can bind, influencing enzyme activity.

    • Definition of Allosteric Regulation: The process whereby the binding of a molecule at one site affects the activity at another site of the enzyme.

    • Both inhibitors and activators can bind to allosteric sites, enhancing or inhibiting enzyme activity.

Feedback Inhibition

  • Definition of Feedback Inhibition: A process where the final product of an enzymatic pathway inhibits an earlier step in the pathway, regulating substrate use.

    • Example: Isoleucine binding to threonine deaminase to prevent further conversion of threonine when enough isoleucine is present.

Multi-Enzyme Complexes

  • Enzymes may function in groups, forming multi-enzyme complexes, which allow for efficiency in metabolic processes.

    • Example: Citric acid cycle enzymes within the mitochondrial matrix work closely together.

Proenzymes and Activation Mechanisms

  • Enzymes can be synthesized as inactive precursors known as proenzymes or zymogens.

    • These require the removal of a specific peptide segment to become active; this often involves proteolytic cleavage by proteases.

    • Example: Caspases are proenzymes that become active during apoptosis (programmed cell death).