Chapter 2 Tran
Chemical Level of Organization
Matter:
Definition: Anything that has mass and occupies space.
Mass: Quantity of matter in an object, equated to weight on Earth, but they are not always equivalent in different gravitational fields.
States of Matter:
Three states:
Solid: Definite shape and volume, particles tightly packed in a fixed arrangement.
Liquid: Definite volume, changeable shape, particles are close but can flow past each other.
Gas: Changeable shape and volume, particles are far apart and move freely.
Unique Property of Water:
Water exists in all three states at temperatures compatible with life: solid (ice), liquid (water), gas (water vapor).
Importance: Unique properties contribute to its role as a solvent, temperature regulator, and participant in biochemical reactions.
Composition of Matter Elements:
Elements: Substances that cannot be broken down and have unique physical and chemical properties.
Key Elements in the Human Body:
Principal Elements:
Oxygen (O): Essential for cellular respiration.
Carbon (C): Backbone of organic molecules, essential for life.
Hydrogen (H): Component of water; participates in energy transfer.
Nitrogen (N): Vital for amino acids and nucleic acids.
Additional Elements:
Calcium (Ca): Important for bone structure, muscle contraction, and nerve signaling.
Phosphorus (P): Key component of ATP, DNA, and cell membranes.
Potassium (K), Sodium (Na), Chlorine (Cl): Participate in fluid balance and nerve conduction.
Trace Elements: Needed in small amounts; including
Zinc (Zn): Important for immune function and enzyme activity.
Chromium (Cr): Involved in glucose metabolism.
Manganese (Mn): Necessary for bone formation and metabolism.
Periodic Table:
Importance: Familiarity with major element symbols (e.g., O, C, Ca, K) is essential for understanding chemical reactions and biological processes.
Atoms and Molecules:
Basic Components: Atoms that interact to form molecules, the smallest stable units of matter.
Structure of Atoms:
Nucleus: Contains protons (positive charge) and neutrons (no charge), responsible for most of the atom's mass.
Electrons: Negatively charged particles orbiting the nucleus.
Atomic Number and Mass Number:
Atomic Number: Number of protons in the nucleus, determining the element’s identity.
Mass Number: Sum of protons and neutrons, influencing the stability of the atom.
Isotopes:
Atoms with the same number of protons but different numbers of neutrons, often useful in medicine (e.g., radioactive isotopes used in imaging).
Chemical Bonds:
Ionic Bonds: Formed by the transfer of electrons; result in charged ions (cations and anions). Example: Sodium (Na) loses an electron to become Na+, while Chlorine (Cl) gains an electron to become Cl-.
Covalent Bonds: Formed by the sharing of electrons between atoms; can be single, double, or triple bonds.
Nonpolar vs Polar Covalent Bonds:
Nonpolar: Equal sharing of electrons, e.g., molecular hydrogen (H2).
Polar: Unequal sharing, e.g., water (H2O) has a partial negative charge near the oxygen atom.
Hydrogen Bonds: Weak attractions between polar molecules, particularly between water molecules, contributing to unique properties like high surface tension and specific heat.
Chemical Reactions:
Definition: Formation or breaking of chemical bonds resulting in products from reactants.
Types of Reactions:
Synthesis Reactions: Smaller molecules combine to form larger ones (anabolic).
Decomposition Reactions: Larger molecules broken down into smaller ones (catabolic).
Exchange Reactions: Bonds are both made and broken, rearranging atoms.
Enzymatic Reactions: Most reactions require enzymes to lower activation energy, influencing reaction rates and allowing for physiological functions.
Energy Forms:
Kinetic Energy: Energy in motion (e.g., muscle contractions, movement of molecules).
Potential Energy: Stored energy available to do work (e.g., chemical energy in food and gasoline).
Energy Conversion: Not 100% efficient; byproducts include heat, according to the laws of thermodynamics.
Importance of Water in Biological Systems:
Universal Solvent: Ability to dissolve polar substances, facilitating biochemical reactions and nutrient transport.
Polarity: Water molecules are polar, allowing for hydrogen bonding and effects such as surface tension, which affects aquatic life and the movement of liquids through small spaces (capillary action).
pH Regulation: Vital to maintaining appropriate body fluid pH, which is essential for enzymatic activity and metabolic processes.
Acids, Bases, and Buffers:
Acids: Substances that release hydrogen ions (proton donors), with a pH < 7, playing a role in digestion and metabolism.
Bases: Substances that release hydroxide ions (proton acceptors), with a pH > 7, important in many biochemical pathways.
Buffers: Compounds that maintain pH levels by absorbing or releasing hydrogen ions, stabilizing pH in biological systems.
Organic Compounds:
Definition: Compounds containing carbon, vital for biological processes, forming the basis of life.
Types:
Carbohydrates: Energy sources; can be classified as monosaccharides (simple sugars), disaccharides (two sugars), and polysaccharides (complex carbohydrates like starch and glycogen).
Lipids: Diverse hydrophobic compounds (e.g., fats, oils, and steroids), important for energy storage, insulation, and cellular structure.
Proteins: Made of amino acids, providing structural support, transport, and catalyzing biochemical reactions; proteins can be denatured, affecting their function.
Nucleic Acids: DNA and RNA; critical for genetic information and protein synthesis.
Nucleotides: Building blocks of nucleic acids, consisting of a sugar, phosphate, and nitrogenous base, playing roles in energy transfer (e.g., ATP).
Nucleic Acids and ATP:
DNA: Double-stranded, contains genetic information, organized into genes.
RNA: Single-stranded, plays roles in protein synthesis (types include messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA)).
ATP: Energy currency of cells, high-energy molecule essential for life processes, facilitating energy transfer.