Cellular Process


Quick Review of Chloroplast Structure

  • Chloroplasts contain thylakoids, grana, outer and inner membranes.

Light Dependent Reactions and Photosystems

  • Activated by light, which excites the process needed to synthesize glucose.

  • Photosystems produce ATP and NADPH, required for light-independent reactions (Calvin Cycle).

  • Splitting water molecules (H2OH_2O) releases Hydrogen ions, Oxygen atoms, and electrons; electrons replace those in PS2.

  • Oxygen molecule is produced during this process.

Steps in Light-Dependent Reactions

  • Hydrogen (H^+$) ions are released.

  • Photoactivation excites electrons transferred to NADP+ to generate NADPH.

  • NADP+ reductase helps electrons from PS1 join NADP+ to generate NADPH (NADP+ is reduced).

  • Higher concentration of H+ in the thylakoid.

  • Facilitated diffusion of H^+ionsthroughamembraneprotein.</p></li><li><p>Energyfromions through a membrane protein.</p></li><li><p>Energy fromH^+diffusionpowerstheadditionofphosphatetoADPtosynthesizeATP(Chemiosmosis).</p></li><li><p>Chemiosmosis:movementofionsacrossasemipermeablemembranedowntheirconcentrationgradient,poweringATPcreation.</p></li></ul><h4id="13e1736e−0b68−4723−98b0−68cae81fc914"data−toc−id="13e1736e−0b68−4723−98b0−68cae81fc914"collapsed="false"seolevelmigrated="true">LightDependentReactionsSummary</h4><ul><li><p>Twomolecules,ATPandNADPH,producedbylight−dependentreactionsareusedinlight−independentreactions(CalvinCycle).</p></li></ul><h4id="59675e49−2a27−43f6−8e5b−f4bc0d08b192"data−toc−id="59675e49−2a27−43f6−8e5b−f4bc0d08b192"collapsed="false"seolevelmigrated="true">ConceptualOverviewofLightDependentReactions</h4><ul><li><p>ATPsynthase,thylakoidlumen,concentrationgradient.</p></li></ul><h4id="f7692222−533c−412c−97d8−d1155e44b120"data−toc−id="f7692222−533c−412c−97d8−d1155e44b120"collapsed="false"seolevelmigrated="true">CalvinCycle</h4><ul><li><p>Thecyclebeginsandendswiththesamesubstance,allowingittorepeatcontinuously.</p></li><li><p>Itregeneratesthestartingmolecule,makingitefficient.</p></li></ul><h4id="4cce5f81−ce8d−420f−ad2f−9c17030473e9"data−toc−id="4cce5f81−ce8d−420f−ad2f−9c17030473e9"collapsed="false"seolevelmigrated="true">Step1:CarbonFixation</h4><ul><li><p>RubiscoenzymeattachesamoleculeofcarbondioxidetoRuBP(Ribulose−1,5−bisphosphate).</p></li><li><p>Thiscreatesanunstable6−carbonintermediatethatsplitsintotwo3−carbonmolecules.</p></li></ul><h4id="984a4dd2−c353−4699−ab92−00c921c23f20"data−toc−id="984a4dd2−c353−4699−ab92−00c921c23f20"collapsed="false"seolevelmigrated="true">CalvinCycleStep1Details</h4><ul><li><p>CarbonFixation:Rubiscoattachesdiffusion powers the addition of phosphate to ADP to synthesize ATP (Chemiosmosis).</p></li><li><p>Chemiosmosis: movement of ions across a semipermeable membrane down their concentration gradient, powering ATP creation.</p></li></ul><h4 id="13e1736e-0b68-4723-98b0-68cae81fc914" data-toc-id="13e1736e-0b68-4723-98b0-68cae81fc914" collapsed="false" seolevelmigrated="true">Light Dependent Reactions Summary</h4><ul><li><p>Two molecules, ATP and NADPH, produced by light-dependent reactions are used in light-independent reactions (Calvin Cycle).</p></li></ul><h4 id="59675e49-2a27-43f6-8e5b-f4bc0d08b192" data-toc-id="59675e49-2a27-43f6-8e5b-f4bc0d08b192" collapsed="false" seolevelmigrated="true">Conceptual Overview of Light Dependent Reactions</h4><ul><li><p>ATP synthase, thylakoid lumen, concentration gradient.</p></li></ul><h4 id="f7692222-533c-412c-97d8-d1155e44b120" data-toc-id="f7692222-533c-412c-97d8-d1155e44b120" collapsed="false" seolevelmigrated="true">Calvin Cycle</h4><ul><li><p>The cycle begins and ends with the same substance, allowing it to repeat continuously.</p></li><li><p>It regenerates the starting molecule, making it efficient.</p></li></ul><h4 id="4cce5f81-ce8d-420f-ad2f-9c17030473e9" data-toc-id="4cce5f81-ce8d-420f-ad2f-9c17030473e9" collapsed="false" seolevelmigrated="true">Step 1: Carbon Fixation</h4><ul><li><p>Rubisco enzyme attaches a molecule of carbon dioxide to RuBP (Ribulose-1,5-bisphosphate).</p></li><li><p>This creates an unstable 6-carbon intermediate that splits into two 3-carbon molecules.</p></li></ul><h4 id="984a4dd2-c353-4699-ab92-00c921c23f20" data-toc-id="984a4dd2-c353-4699-ab92-00c921c23f20" collapsed="false" seolevelmigrated="true">Calvin Cycle Step 1 Details</h4><ul><li><p>Carbon Fixation: Rubisco attachesCO_2 to RuBP.

    • 1 carbon atom in carbon dioxide, 5 carbon atoms in RuBP.

  • The resulting 6-carbon molecule splits into two 3-carbon molecules (GP or PGA).

Step 2: Reduction of GP

  • Electrons from NADPH are added to GP, reducing GP molecules.

  • NADPH is oxidized (loses electrons).

  • ATP is required for GP reduction.

  • Reduced GP molecules become TP molecules.

  • One TP molecule goes to make Glucose, while others regenerate RuBP.

Reduction of GP Details

  • GP is reduced to TP (3-carbon molecule).

  • NADPH is oxidized, ATP is used.

Step 3: Regeneration of RuBP

  • One TP molecule makes glucose; the other five regenerate RuBP.

  • Since TP is a 3-carbon molecule and RuBP is a 5-carbon molecule, five TP molecules are needed to create three RuBP molecules.

  • G3P is TP.

Regeneration of RuBP Details

  • Five TP molecules (5 x 3C) create three RuBP molecules (3 x 5C) with the help of ATP.

Calvin Cycle Products

  • One molecule of Glucose has 6 carbons.

  • The Calvin Cycle diagram needs to occur twice to make one glucose molecule, since we need 2 TPs to make 1 Glucose

  • The Calvin Cycle produces Carbohydrates, Lipids, and proteins.

Light Independent Reactions and the Calvin Cycle

  • The Calvin Cycle

Calvin Cycle Review

  • ATP, NADPH, G3P.

Calvin Cycle & Light Reactions

  • Light-dependent reactions use light energy to generate ATP and NADPH, which are required to shuffle carbon atoms in the Calvin Cycle to make glucose and regenerate RuBP.

  • ATP and NADPH are limiting factors for photosynthesis.

  • Carbon dioxide is also a limiting factor.

Factors Affecting Photosynthesis

  • Light Intensity, Carbon Dioxide Concentration, and Temperature.

Measuring Photosynthesis

  • Measure the rate of oxygen production or carbon dioxide intake.

  • Track changes in biomass (indirect reflection of photosynthetic rate).

Factors Influencing Rate of Photosynthesis

  • Photosynthesis is a metabolic pathway influenced by: carbon dioxide concentration, light intensity, and temperature.

Carbon Dioxide Concentration

  • Carbon dioxide is a substrate for the enzyme Rubisco.

  • An initial increase in CO2 concentration increases the reaction rate.

  • Eventually, enzymes saturate, and further CO2 increase does not increase the rate of reaction.

Rubisco and Saturation

  • Enzymes reach a saturation point.

  • Once all active sites are filled, the speed reaction cannot proceed faster unless you increase the amount of enzyme rather than substrate (CO2).

Light Intensity

  • Light is needed for light-dependent reactions to create ATP and NADPH for the Calvin Cycle.

  • Initially, increased light intensity leads to more photoactivation and photosynthesis.

  • At a certain point, all photosystems are activated, and the reaction plateaus.

Light Intensity and Photoactivation

  • Increasing light intensity increases photoactivation, ATP/NADPH production, and photosynthesis rate, up to a point.

  • Once all photosystems are activated, increasing light intensity does not further increase the reaction.

Temperature

  • Photosynthesis relies on enzymes, so temperature affects the reaction rate similarly to enzymatic activity.

Temperature and Enzyme Activity

  • Increased temperature increases collisions and the reaction rate.

  • Above a certain temperature, enzymes denature, and the reaction slows down.

  • A factor is limiting if an increase in that factor increases the reaction rate.

Limiting Factors Overview

  • Light, carbon dioxide, temperature.

Limiting Factors and CO2 levels

  • At 800 Wm^{-2},increasingthetemperaturefrom20to30hasnoeffecton330ppm, increasing the temperature from 20 to 30 has no effect on 330 ppmCO_2.</p></li><li><p>Increasing.</p></li><li><p>IncreasingCO2from330to660ppmsignificantlyincreasestherateofphotosynthesis,indicatingfrom 330 to 660 ppm significantly increases the rate of photosynthesis, indicatingCO2isthelimitingfactor.</p></li></ul><h4id="3c499e31−b2c1−4617−9f0d−0c38a91f8d13"data−toc−id="3c499e31−b2c1−4617−9f0d−0c38a91f8d13"collapsed="false"seolevelmigrated="true">C1.2:CellularRespiration−GuidingQuestions</h4><ul><li><p>Whataretherolesofhydrogenandoxygeninthereleaseofenergyincells?</p></li><li><p>Howisenergydistributedandusedinsidecells?</p></li></ul><h4id="6d6698c6−40d7−42cb−9d9b−6a5dc5e9870c"data−toc−id="6d6698c6−40d7−42cb−9d9b−6a5dc5e9870c"collapsed="false"seolevelmigrated="true">WhyWeBreathe</h4><ul><li><p>Gasexchangeoccursinthelungsbetweenthepulmonaryandcirculatorysystems.</p></li><li><p>Carbondioxide−richbloodenterscapillariesaroundalveoli.</p></li><li><p>Alveolicontainoxygen−richgasafterinhalation.</p></li><li><p>Simplediffusionallowsbloodcellstounloadis the limiting factor.</p></li></ul><h4 id="3c499e31-b2c1-4617-9f0d-0c38a91f8d13" data-toc-id="3c499e31-b2c1-4617-9f0d-0c38a91f8d13" collapsed="false" seolevelmigrated="true">C1.2: Cellular Respiration - Guiding Questions</h4><ul><li><p>What are the roles of hydrogen and oxygen in the release of energy in cells?</p></li><li><p>How is energy distributed and used inside cells?</p></li></ul><h4 id="6d6698c6-40d7-42cb-9d9b-6a5dc5e9870c" data-toc-id="6d6698c6-40d7-42cb-9d9b-6a5dc5e9870c" collapsed="false" seolevelmigrated="true">Why We Breathe</h4><ul><li><p>Gas exchange occurs in the lungs between the pulmonary and circulatory systems.</p></li><li><p>Carbon dioxide-rich blood enters capillaries around alveoli.</p></li><li><p>Alveoli contain oxygen-rich gas after inhalation.</p></li><li><p>Simple diffusion allows blood cells to unloadCO2andpickupand pick upO2.

  • Oxygenated blood returns to the heart and is pumped around the body.

Electron Carrier Review

  • Reusable molecules produced during cellular respiration: ADP & ATP, NAD+ & NADH, FAD & FADH2.

ATP Importance

  • ATP stands for adenosine triphosphate.

  • Any cellular processes needing energy require ATP.

  • ATP is generated by Hydrolysis (catabolic reactions).

Energy Source

  • Photophosphorylation relies on light energy, and oxidative phosphorylation relies on the movement of electrons.

Cellular Respiration Relevance

  • All living things generate ATP through cellular respiration.

  • Cellular Respiration equation: C6H{12}O6 + 6O2 \rightarrow 6CO2 + 6H2O$$

  • Cellular Respiration is a combustion reaction that releases energy stored in glucose to create ATP.

Overview of Cellular Respiration

  • Four steps: Glycolysis, Pyruvate Oxidation, Citric Acid Cycle, ETC

Cellular Respiration Steps

  • Glycolysis, Link Rxn, Kreb’s Cycle, ETC

  • ETC (oxidative phosphorylation).

  • Kreb’s Cycle.

  • ETC (oxidative phosphorylation).

  • ETC yields about ~36 ATP.

Step 1: Glycolysis

  • "Glyco" refers to sugar, and "lysis" refers to splitting, meaning