Chapter Review on Predation, Symbiosis, and Evolution

Introduction to Predator-Prey Dynamics

  • Cost of Defense Mechanisms

    • Predator’s choice to attack or not involves energy allocation for fighting or fleeing.

    • Results in the potential for energy loss and risk of injury.

Escape Strategies

  • Running Away

    • Animals utilize unpredictable movement patterns when escaping predators.

    • Notable examples:

    • Grasshoppers: Jumping high with erratic movements.

    • Rabbits: Zigzag patterns to evade foxes or dogs.

    • Antelope and Cheetahs: Cheetahs must adjust their approach as antelopes change direction rapidly.

    • Cephalopods: Ink release enables an escape by obscuring their presence.

Physical Defenses

  • Armor

    • Turtles have shells providing protection for soft body parts.

    • Triceratops: Fossils show adaptation in neck protection through thick shields.

    • Armadillo: Keratinized skin resembles a shell, enhancing protection.

    • Beetles: Thick protein-based shells can deter predation without calcification.

Mass Production as Defense

  • Semelparity and Nesting

    • Release large quantities of offspring simultaneously to overwhelm predators.

    • Two primary advantages:

    • Confuses predators regarding which offspring to attack.

    • Can satiate predators quickly, allowing some offspring to survive.

    • Examples include:

    • Cicadas: Emerge en masse every 17 years.

    • Lobsters: Release hundreds of thousands of larvae overnight.

Combination of Defense Techniques

  • Examples in Lobster Defense:

    • Weapons such as claws and spiny structures act as physical deterrents.

    • Use of sound to repel predators and bright colors signaling unpalatability.

Specific Examples of Defensive Strategies

  • Camouflage:

    • Example: Flounder blending into the sand.

  • Schooling:

    • Safety in numbers helps deter predators.

  • Intimidation and Weaponry:

    • Porcupines using quills to threaten predators.

Inducible Defenses

  • Efficiency in Defense Mechanisms

    • Costs incurred to create defenses mean they are only activated when predators are present.

    • Mussels Example:

    • Increase shell thickness and thistle thread strength when sensing predators.

    • Data Comparison Experiment:

    • Without predators: Shell strength ~15-16 newtons.

    • With predator scent: Shell strength increased to over 40 newtons.

Comparative Physiology of Inducible Defenses

  • Shell thickness changes based on predator presence incorporate protein links and calcification.

  • Volume and surface area considerations illustrate significant changes due to increased thickness.

Evolutionary Implications in Defensive Strategies

  • Symbiotic Relationships

    • Three main types:

    1. Mutualism: Benefits both organisms. E.g., plants with nitrogen-fixing bacteria.

    2. Commensalism: One benefits, the other is unaffected. E.g., clownfish and anemone.

    3. Parasitism: One benefits at the expense of another. E.g., heartworms in pets.

  • Types of Mutualism:

    • Facultative: Both can live independently but thrive together.

    • Obligate: Species cannot survive without each other.

Types and Mechanisms of Predation

  • Ectoparasites vs Endoparasites

    • Ectoparasites: External feeders; e.g., mosquitoes.

    • Endoparasites: Internal feeders; can be dangerous if populations grow too large, potentially causing starvation of hosts.

The Arms Race Metaphor in Evolution

  • A constant evolutionary battle between predator adaptations and prey defensive techniques resulting in varying success rates for each side.

  • Honest Signals:

    • Example: Monarch butterflies ingesting toxic cardiac glycosides from milkweed, retaining toxins to protect from predators.

Historical Perspectives in Evolutionary Theory

  • Aristotle: Early classification of organisms, linked to biblical perspectives.

  • Linnaeus: Developed binomial nomenclature, recognized some species could change; influenced modern taxonomic methods.

  • Nicholas Steno: Father of stratigraphy; introduced fossil record principles and layering.

  • Georges Cuvier: Established extinction concepts, studied fossil layers; catastrophism theory.

  • William Smith: Created first geological maps connecting fossils to specific rock layers across ages.

  • Charles Lyell: Influenced Darwin with the concept of gradual change in geological processes.

  • Jean-Baptiste de Lamarck: Proclaimed ideas of adaptation and species change due to environmental alterations.

Closing Remarks and Transition to Evolution

  • Understanding the dynamics of predator-prey relationships highlights broader principles of evolution and adaptation in ecological contexts.

🧩 COMMUNITY ECOLOGY

What is a Community?

A community = all interacting populations (different species) in a defined area.

  • Focuses on interactions between species

  • Includes plants, animals, microbes, fungi, etc.

Emergent Properties of Communities

Community-level characteristics that arise from interactions among species.

Property

Meaning

Scale

Defined spatial area (forest, pond, gut microbiome) + time scale

Spatial structure

Physical arrangement of organisms & niches (vertical layering in forest, zonation on shorelines)

Temporal structure

How community composition changes through day/season/year (diurnal predators vs nocturnal ones, seasonal blooms)

Species richness

# of species in community

Species diversity

Richness + relative abundance (evenness)

Trophic structure

Feeding relationships & energy flow levels (food web, chains)

Succession & disturbance

Predictable recovery after disturbance; primary vs secondary succession


Biodiversity

Biodiversity = number AND variety of organisms in a region.

Can be measured at:

  • Genetic level (variation within species)

  • Species level (richness/diversity)

  • Ecosystem level (variety of habitats)

Importance

  • Increases ecosystem productivity, resilience, and stability

  • Maintains nutrient cycling, pollination, food webs, disease resistance

Productivity relationship

  • Higher ecosystem productivity → higher biodiversity

  • Why? More resources → more niches

Measuring diversity

  • Species richness + evenness

  • Indices (Shannon Index, Simpson Index) used to compare communities over time or across sites


Niche Concepts

Term

Definition

Fundamental niche

Full potential range species could occupy w/out competition

Realized niche

Portion actually occupied due to competition/predation

Competitive Exclusion Principle

Two species cannot occupy the exact same niche indefinitely.

Outcomes:

  • Extinction of one species

  • Niche differentiation (Resource partitioning)

  • Character displacement (evolution of traits to reduce competition)

Examples:

  • Darwin’s finches evolving different beaks for food sources


Energy Flow & Trophic Levels

Key rule: Energy flows one way; nutrients cycle

Trophic Level

Notes

Primary producers

Autotrophs (plants, algae); sunlight + nutrients limit productivity

Primary consumers

Herbivores

Secondary consumers

Eat herbivores

Tertiary consumers

Top predators (not always present)

Decomposers

Fungi/bacteria break down dead organisms

Detritivores

Consume waste (dung beetles, worms)

10% rule

  • Only ~10% of energy moves up a trophic level (5-20% range)

  • Most lost as heat/respiration

Top-down control

  • Predators regulate lower levels (keystone species)

  • Removing wolves causes elk explosion → tree decline

Bottom-up control

  • Productivity (# of nutrients, sunlight) limits food web size


Species Interactions

Interaction

Effect on Species 1

Effect on Species 2

Example

Mutualism

+

+

Bees & flowers (obligate vs facultative)

Commensalism

+

0

Barnacles on whales

Parasitism

+

Tapeworms, ticks

Predation

+

Wolf eats deer

Herbivory

+

Caterpillar eats leaf

Competition

Two species compete for one resource

Amensalism

0

Elephants crushing plants

Ways to avoid predation

  • Camouflage, mimicry, schooling, warning coloration, chemical defense, armor, speed, spines


🌍 EVOLUTIONARY IDEA FOUNDATIONS

Geological Influence & Age of Earth

Scientist

Contribution

Steno

Fossils formed in layers; Law of Superposition

Hutton

Gradual processes → deep time (slow change)

Lyell

Uniformitarianism = Earth changes slowly and steadily; huge influence on Darwin

Smith

Geological maps & index fossils to identify strata

Big shift

  • Earth = old (millions+ years, not 6,000)

  • Slow gradual changes allow evolution time


Early Biological Thinkers (Pre-Darwin)

Name

Contributions

Buffon

Species change, common ancestry, environment drives change

Erasmus Darwin

Common descent, competition drives change

St. Hilaire

Homology (common structures), common body plans

Cuvier

Catastrophism, fossils show successive life forms


Lamarck’s Theory (First Evolution Model)

Key principles:

  1. Organisms seek complexity/perfection

  2. Use & disuse alters organs

  3. Inheritance of acquired traits

  4. Changes accumulate → new species

Examples he used:

  • Giraffe neck stretches → longer neck in offspring

  • Snakes lost limbs from disuse

  • Cave animals losing eyes

Incorrect aspects

  • Acquired traits aren't inherited genetically
    (except limited epigenetic cases — gene expression changes, not DNA sequence)


Darwin & Wallace’s Theory of Natural Selection

Observations

  • More offspring produced than survive

  • Variation exists within populations

  • Variation is heritable

Inferences

  • Some variations give survival/reproduction advantages

  • Advantageous traits increase in population over generations

  • Leads to adaptation & eventual speciation

Key Influences:

  • Malthus: human population growth → competition & struggle for existence


Key Differences: Darwin vs Lamarck

Lamarck

Darwin/Wallace

Change from use/disuse

Change from heritable variation

Traits acquired during life inherited

Only genetic traits inherited

Evolution is purposeful toward complexity

Evolution has no goal, shaped by environment

No extinction

Extinction is real

Organisms "try" to evolve

Nature selects existing variation

NS 201 Exam 2 Master Notes — Part 2

🧬 Darwin, Wallace, Malthus, Lamarck & Evolution Theory

Thomas Malthus

  • Wrote Essay on the Principle of Population

  • Observed:

    • Human population grows geometrically

    • Food production grows arithmetically

    • Population > resources → competition, struggle

    • Influenced Darwin & Wallace: not all survive → selection pressure


Lamarck's Evolution Theory

Mechanisms he proposed:

  1. Organisms strive toward complexity

  2. Use & disuse

    • Frequently used structures strengthen & increase

    • Unused structures shrink

  3. Inheritance of acquired characteristics

    • Traits gained during lifetime passed to offspring

  4. Accumulation leads to new species

Examples Lamarck used:

  • Giraffes stretch necks → longer neck offspring

  • Snakes lost limbs via disuse

  • Cave animals lose eyes

Why Lamarck is wrong

  • Acquired physical traits don’t change DNA

  • But partly revived now via epigenetics (environment can alter gene expression, not DNA sequence)


Darwin & Wallace Theory of Natural Selection

Observations

  • More offspring produced than survive

  • Populations show variation

  • Traits are heritable

Conclusions

  • Individuals with advantageous heritable traits survive & reproduce more

  • Over many generations → adaptations accumulate

  • Population evolves, not individuals


Key Definitions

Term

Meaning

Natural selection

Environment selects beneficial inherited traits

Adaptation

Heritable trait that increases fitness

Fitness

Ability to survive & reproduce


Differences: Lamarck vs Darwin

Lamarck

Darwin/Wallace

Use/disuse change body

Variation already exists

Acquired traits inherited

Only genetic traits inherited

Evolution purposeful

No goal → changes due to environment

No extinction

Extinction real

Organisms try to adapt

Nature selects traits that already exist


Evidence for Evolution

1) Artificial Selection

  • Humans choose traits (dogs, crops)

  • Shows heritable variation can rapidly shape species


2) Fossil Record

  • Older → simpler organisms

  • Transitional fossils show gradual change

    • Tiktaalik: fish → tetrapod

    • Horses: many toes → 1 toe, teeth change, taller

Most organisms don’t fossilize — bias toward hard structures & certain environments


3) Comparative Anatomy

Type

Meaning

Example

Homology

Same origin, diff function

Human arm, whale fin, bat wing

Analogy (homoplasy)

Same function, diff origin

Bird wing vs insect wing

Vestigial

Remnant structures

Human tailbone, whale pelvis

Atavism

Ancestral trait reappears

Extra horse toes, human tail


4) Embryology

  • Early embryos similar across vertebrates

  • Pharyngeal arches → fish gills / human ear & throat bones

Shared developmental pathways = shared ancestry


5) Biogeography

  • Island species resemble nearby mainland species

  • Continental drift explains fossils matching separated continents

  • Adaptive radiation (ex: Darwin’s finches)


6) Molecular Genetics

  • DNA sequences diverge over time → molecular clock

  • Hox genes control body plans in animals — highly conserved

Deep genetic similarity across species supports common ancestry


Phylogeny & Systematics

Terms

Term

Meaning

Phylogeny

Evolutionary history of species

Taxon

Any group (species, genus, etc.)

Clade

Ancestor + all descendants

Root

Ancestral lineage

Node

Common ancestor; branching point

Sister taxa

Closest relatives

Outgroup

Used to determine ancestral traits


Trait Types

Term

Meaning

Ancestral trait (plesiomorphy)

Original trait from ancestor

Derived trait (apomorphy)

New trait

Synapomorphy

Shared derived trait that defines a clade

Autapomorphy

Unique derived trait for one lineage


Speciation Concepts

  • Disruptive selection increases divergence → speciation

  • Allopatric = geographic barrier

  • Sympatric = speciation without physical separation (ex: niche partitioning, polyploidy in plants)


Part 3 — Genetics, Cell Theory, Chromosomes

🧬 Cell Theory

Scientist

Contribution

Schleiden & Schwann

All living things made of cells; cells are basic unit

Virchow

Cells come from pre-existing cells

Flemming

Chromosomes visible during mitosis

Beneden

Gametes are haploid, fertilization restores diploid

Weismann

Germ plasm theory; heredity in gametes, not soma


Mendel’s Work

Key conclusions

  • Traits controlled by heritable factors (genes)

  • Each individual has two alleles

  • Alleles segregate during meiosis

  • Alleles assort independently (unless linked)

  • Dominant vs recessive traits


Terms

Term

Meaning

Allele

Variant of a gene

Genotype

Genetic makeup

Phenotype

Observable trait

Homozygous

Same alleles (AA, aa)

Heterozygous

Different alleles (Aa)


Chromosome Theory

  • Sutton & Boveri: chromosomes carry genes

  • Behavior of chromosomes in meiosis = Mendel's laws


Morgan’s Experiments (Fruit Flies)

  • Discovered sex-linked traits

  • White-eye mutation only in males → X-linked

  • Showed genes on chromosomes

  • Linked genes deviate from independent assortment

  • Crossing over produces recombinants


Types of Mutations

Type

Meaning

Somatic

Body cells; NOT inherited

Germ-line

Gametes; heritable

Point mutation

Single nucleotide change

Chromosomal aberrations

Deletions, inversions, nondisjunction


Nondisjunction (Calvin Bridges)

  • Chromosomes fail to separate in meiosis

  • Results: XO, XXY, XXX, etc.

  • Confirmed chromosomes carry heredity


Sex Determination

  • Y chromosome has SRY gene → testes development

  • Hormones influence external development

  • Genetics + environment = phenotype variation

Sexual development = complex; many pathways, variations