MBC1125 Test 1 Notes

Protein Tertiary Structure Formation

  • Involves hydrogen bonds, hydrophobic interactions, and ionic bonds.

Hemoglobin Formation

  • The interaction of two α and two β subunits to form a functional hemoglobin molecule exemplifies quaternary structure.

Cell Membrane Composition

  • Cell membranes are principally composed of phospholipids.

Amphipathic Molecules

  • An amphipathic molecule is part water-soluble and part water-insoluble.

Fundamental Building Block of Cellular Membranes

  • The fundamental building block is the phospholipid.

Mitochondrial Inner Membrane In-foldings

  • The in-foldings of the inner mitochondrial membrane are called cristae.

Inner Compartment of Mitochondria

  • The inner compartment of mitochondria is called the matrix.

Electron Transport Location

  • Electron transport occurs in the mitochondrial inner membrane.

Plasma Membrane Function

  • The plasma membrane functions as a selective barrier to the passage of molecules.
  • It also serves as a site for the uptake of macromolecules into the cell and a site for cell-cell interactions.

Plasma Membrane Barrier

  • The plasma membrane's barrier to passive diffusion is primarily a function of the membrane's phospholipids.

Plasma Membrane Phospholipid Distribution

  • Plasma membrane phospholipids are asymmetrically distributed between the two membrane halves.

Mammalian Erythrocytes

  • Mammalian erythrocytes (red blood cells) are particularly useful for studies of the plasma membrane because they have only one membrane, the plasma membrane.

Erythrocyte Proteins

  • The two erythrocyte proteins glycophorin and band 3 are transmembrane proteins.

Membrane Protein Clusters

  • Clusters of transmembrane α helices in membrane proteins such as RBC band 3 define segments through which ions can be transported.

Passive Diffusion Across Plasma Membrane

  • Molecules that diffuse passively across the plasma membrane most rapidly are small and hydrophobic.

Facilitated Diffusion

  • Facilitated diffusion differs from passive diffusion in that facilitated diffusion is mediated by a protein carrier or channel.

Phospholipid Movement in Membrane

  • Phospholipids in a membrane commonly move laterally in the plane of the bilayer and rotate within the bilayer.

Membrane Structure Model

  • The currently accepted model of membrane structure is called the fluid mosaic model.

Membrane Function

  • The unique functions of different membranes are primarily due to their proteins.

Transmembrane Proteins

  • Transmembrane proteins that span the membrane are integral membrane proteins.

Transmembrane Protein Spanning

  • Transmembrane proteins can span the lipid bilayer as α helices.

Estrogen Signaling

  • Signaling by the steroid hormone estrogen is an example of endocrine signaling.

Neurotransmitter Signaling

  • Signaling by neurotransmitters is an example of paracrine signaling.

Signal Molecule Diffusing Through Plasma Membrane

  • Estrogen is the signal molecule that diffuses through the plasma membrane to ultimately bind nuclear receptors and influence transcription.

Steroid Hormone Receptors

  • Steroid hormones usually act via receptors that bind directly to DNA.

Nitric Oxide as a Signal Molecule

  • Nitric oxide diffuses across cell membranes and directly alters the activity of intracellular enzymes.

Molecule Stimulating Fibroblast Proliferation

  • EGF stimulates fibroblasts to proliferate and thus heal a wound.

G Protein Activating Adenylyl Cyclase

  • The G protein that activates adenylyl cyclase is a heterotrimeric G protein that separates into α and βγ subunits.

GTP on G Protein

  • The GTP on the G protein that is linked to adenylyl cyclase is split to GDP and Pi upon activation by the receptor.

Cholera Toxin

  • Cholera toxin inhibits the ability of the α subunit of Gs to split GTP. The toxin causes stimulation.

Alpha Subunit of G Protein

  • The alpha subunit of the G protein that is associated with the epinephrine receptor, Gs, activates adenylate cyclase.

Major Function of cAMP

  • A major function of cAMP in animal cells is to activate protein kinase A.

First Step in Growth Factor Pathway Activation

  • The first step in growth factor pathway activation is receptor dimerization.

Hydrolysis of PIP2 by Phospholipase C

  • Hydrolysis of PIP2 by phospholipase C is stimulated by both GPCR and tyrosine kinase receptors.

Second Messenger PIP3

  • The second messenger, PIP3 is generated by the action of the enzyme phosphatidylinositide (PI) 3-kinase on phosphatidylinositol 4,5-bisphosphate (PIP2).

Molecular Basis of Cystic Fibrosis

  • The molecular basis of cystic fibrosis is the production of a defective chloride channel.

Gene Therapy for Cystic Fibrosis

  • Gene Therapy for cystic fibrosis involves transfer of the CFTR gene into bronchial epithelia.

Calcium Levels in Cytosol

  • Calcium levels remain low in the cytosol thus Ca2+ increase can be used as intracellular signals.

Permeability of Phospholipid Bilayers

  • Phospholipid bilayers are permeable only to molecules that are small and uncharged.

Passive Transport Molecules

  • Passive transport molecules allow small molecules across membranes.

Molecules Traversing Membrane Against Concentration Gradient

  • Molecules that traverse a membrane against their concentration gradient do so by active transport.

Steroid Hormones

  • Steroid hormones are derivatives of cholesterol.

Enzymes as Catalysts

  • Like other catalysts, enzymes increase the reaction rates without being consumed and do not alter the chemical equilibrium.

Enzyme Action

  • Enzymes act by decreasing activation energy.

Reaction Mechanism

  • A reaction in which the substrate binds to the enzyme and the configuration of both molecules changes is an example of an induced fit mechanism.

Trypsin and Chymotrypsin Enzymes

  • Trypsin and chymotrypsin enzymes are called proteases.

Coenzymes

  • Coenzymes are all molecules that work with an enzyme.

ΔG for ATP Hydrolysis

  • The ΔGΔG for hydrolysis of ATP to ADP and Pi is −7.3-7.3 kcal/mol.

Electron Transport and Oxidative Phosphorylation Location

  • Electron transport and oxidative phosphorylation are performed by protein complexes in the mitochondrial inner membrane.

Hypothesis of Oxidative Phosphorylation

  • The hypothesis of oxidative phosphorylation is called the chemiosmotic hypothesis.