Organic Molecules: Chains, Isomers, and Macromolecules

Carbon and Organic Compounds

  • Organic compounds are based on carbon and hydrogen; carbon is tetravalent, enabling diverse structures.
  • Fossil fuels are hydrocarbons; hydrocarbons form the backbone of many everyday molecules.

Carbon Chains and Representations

  • Chains can be unbranched or branched; each carbon forms four bonds to C or H.
  • Double bonds change connectivity; rings are another common representation, with carbons at joining points and hydrogens filling remaining valences.
  • The same molecule can be drawn as a chain or a ring.
  • Example formulas to recall: C<em>8H</em>18C<em>8H</em>{18} and C<em>20H</em>42C<em>{20}H</em>{42}.

Isomers

  • Isomers have the same formula but different structures.
  • Structural isomers: different covalent arrangements; more carbons/hydrogens lead to more possible isomers (e.g., many for C<em>8H</em>18C<em>8H</em>{18}).
  • Geometric (cis/trans) isomers: same covalent arrangement around a double bond; cis = same side, trans = opposite sides.
  • Enantiomers (chirality): non-superimposable mirror images around an asymmetric carbon; L and D forms; biology often prefers one form (e.g., amino acids L, sugars typically D).

Functional Groups

  • Functional groups are reactive moieties that drive chemistry.
  • Common groups include hydroxyl (-OH), carbonyl (C=O), carboxyl (-COOH), amino (-NH2), phosphate (-PO4H_2); others exist.
  • These groups influence reactivity and hydrophilicity.

Macromolecules and Polymers

  • Macromolecules are polymers made of repeating monomers.
  • Examples: proteins (amino acids), nucleic acids (nucleotides), carbohydrates (simple sugars).
  • Condensation (dehydration) reactions build polymers with the release of water (H from one monomer, OH from another).
  • Hydrolysis is the reverse: water is added to break polymers into monomers; enzymes assist digestion.

Monomers, Polymers, and Protein/Nucleic Acid Formation

  • The sequence of monomers determines structure and function (e.g., amino acids in proteins; nucleotides in RNA).
  • Polymers can be drawn as chains or rings; carbons are numbered along chains to indicate structure.

Notation Examples

  • For hydrocarbons: C<em>8H</em>18C<em>8H</em>{18}, and larger examples: C<em>20H</em>42C<em>{20}H</em>{42}.