Unit 2

2.1 Atoms and Atomic Bonds

Learning Outcomes

Upon completion of this section, you should be able to:

  • Distinguish among the types, locations, and charges of subatomic particles.

  • Relate how the arrangement of electrons determines an element's reactivity.

  • Explain how isotopes are useful in the study of biology.

  • Contrast ionic and covalent bonds.

  • Identify the reactants and products in a chemical equation.

Concepts of Matter

  • Matter is defined as anything that takes up space and has mass. It exists in several states: solid, liquid, gas, or plasma (a state of ionized gas).

  • Living organisms and nonliving things (like air) are composed of matter.

Elements and Composition

  • All matter comprises elements, which are substances that cannot be broken down by ordinary chemical means.

  • Elements serve as the building blocks of matter. Naturally occurring elements are vital for biological functions.

  • Four elements—carbon, hydrogen, nitrogen, and oxygen—comprise approximately 96% of body weight in most organisms. Other essential elements include phosphorus, calcium, and sulfur, while trace elements include minerals like zinc and chromium.

Atomic Structure

  • Atomic Theory: Elements consist of tiny particles called atoms, each represented by an atomic symbol (e.g., H for hydrogen, Na for sodium).

  • Atoms are primarily made of three types of subatomic particles:

    • Neutrons: No electrical charge.

    • Protons: Positive charge.

    • Electrons: Negative charge.

  • Protons and neutrons reside in the nucleus (center of the atom), while electrons orbit the nucleus. Most of the atom is empty space.

  • Analogy: If an atom were the size of a baseball stadium, the nucleus would be like a gumball, and electrons would be tiny specks moving around in the upper stands.

Mass of Atoms

  • The mass number of an atom equals the sum of its protons and neutrons. Protons and neutrons each have a mass of one atomic mass unit (amu). Electrons are negligible in mass for most calculations.

  • Atomic number: Represents the number of protons in an atom, determining an element's identity. For neutral atoms, the number of electrons equals the number of protons.

  • To find the number of neutrons, subtract the number of protons from the atomic mass, rounded to the nearest whole number.

The Periodic Table

  • The Periodic Table displays elements based on their recurring chemical and physical properties.

  • Structure: Atomic numbers are written above the symbols, while atomic masses are provided below.

  • Example: Carbon (C) has:

    • Atomic Number: 6

    • Atomic Mass: 12.01

  • Elements in group 8 are called noble gases, which rarely react with other atoms due to complete outer shells.

Isotopes

  • Isotopes: Atoms of the same element with varying numbers of neutrons, hence different mass numbers.

  • Some isotopes are unstable and radioactive, meaning they can decay and emit radiation, detectable by devices like a Geiger counter. Not all isotopes are radioactive.

Understanding Radioactivity

  • Radioactivity is utilized for electricity, food safety, and medical advancements. It's essential for understanding biological processes at the cellular level.

Uses of Radioactive Isotopes

  • Radioactive isotopes can act as tracers to detect changes at the molecular level or to eliminate harmful cells. They behave similarly to stable isotopes during chemical reactions.

  • Example: Radioactive iodine (iodine-131) studies thyroid function. Positron-emission tomography (PET) scans utilize radiolabeled glucose to assess metabolic activity in tissues.

Arrangement of Electrons in Atoms

  • The model of electron arrangement likens electrons to a ceiling fan; when in motion, they blend into a blur. Their precise location is indeterminate but governed by energy levels called electron shells. More energy is required to orbit further from the nucleus.

  • Electron Shells: Electrons fill shells from the inside out—first shell (2 electrons), second shell (8 electrons), third shell and beyond (up to 18 electrons with increasing distance).

  • Octet Rule: Atoms aim to have eight electrons in their outer shell for stability, except those with fewer than two shells (which complete with two electrons).

Types of Chemical Bonds

  • Atoms can bond to form molecules (groups of atoms bonded together) or compounds (molecules with multiple element types).

Ionic Bonds
  • Ionic bonds form from the attraction between oppositely charged ions resulting from electron transfer.

  • Example: In sodium chloride (NaCl): Sodium (Na) donates an electron, becoming Na+; Chlorine (Cl) accepts the electron, becoming Cl−. Together they form NaCl.

Covalent Bonds
  • Covalent bonds occur when atoms share electrons to achieve filled outer shells.

  • Example: Hydrogen gas (H₂) involves shared electrons, illustrated by the structural formula H-H.

  • Atoms can share multiple pairs of electrons, forming double (like O₂) or triple bonds (like N₂).

Ionic vs Covalent Bonds
  • Differences in ionic vs covalent bonding include the method of electron arrangement: ionic involves transfer and resulting charge, while covalent involves sharing.

Bonding Examples

  • Methane (CH₄): Carbon forms tetravalent bonds with four hydrogen atoms, with bonds represented in various models (ball-and-stick, space-filling).