A&P I Chemistry - Chapter 2 Lecture Notes

A&P I Chemistry - Chapter 2 Lecture Pt. 1 by Raymond Berry III, PhD

Chemistry and Physiological Reactions

  • Chemistry is fundamental to understanding physiological reactions in the body.
    • The body is made up of numerous chemicals.
    • Chemistry underlies all physiological processes, such as:
    • Movement
    • Digestion
    • Pumping of the heart
    • Functioning of the nervous system
  • Chemistry can be categorized into two subfields:
    • Basic Chemistry
    • Biochemistry

Energy

  • Energy is defined as the capacity to do work or to put matter into motion.
  • Energy exists in two primary forms:
    • Kinetic Energy:
    • Energy of movement (energy in action).
    • Potential Energy:
    • Stored energy (inactive) that can be transformed into kinetic energy.
  • The transformation of energy from potential to kinetic can result in action.

Forms of Energy

  • The following are common forms of energy:
    • Chemical Energy:
    • Energy stored in the bonds of chemical substances.
    • Electrical Energy:
    • Caused by the movement of charged particles.
    • Mechanical Energy:
    • Energy directly involved in moving matter.
    • Radiant/Electromagnetic Energy:
    • Energy that travels in waves (e.g., heat, visible light, ultraviolet light, and X-rays).

Atoms and Elements

Basic Concepts
  • All matter is composed of elements, defined as substances that cannot be broken down into simpler substances by ordinary chemical methods.
  • Four key elements constitute about 96% of the human body:
    • Carbon (C)
    • Oxygen (O)
    • Hydrogen (H)
    • Nitrogen (N)
  • An additional 9 elements makeup approximately 3.9% of the body, while 11 elements constitute less than 0.01%.
  • The Periodic Table lists all known elements.
Periodic Table and Elements
  • There are 90 naturally occurring elements, with 12 found in living organisms in substantial amounts.
  • The four elements that make up 96.3% of human body weight are C, H, O, and N.
  • Organic molecules primarily consist of these elements, often referred to by the acronym CHON.
  • Some trace elements, though minimal in quantity, are essential for physiological functions such as:
    • Methane
    • Acetone
Atomic Structure
  • All elements consist of atoms, which are the unique building blocks of each element.
    • Atoms are the smallest particles of an element that retain the properties of that element.
    • Understanding atomic structure is essential for grasping the nature of biological molecules.
Atomic Symbols
  • Each element has a one or two-letter atomic symbol.
    • Example: “O” for oxygen, “C” for carbon.
    • Some symbols derive from Latin names: “Na” (from natrium) for sodium, and “K” (from kalium) for potassium.
Atomic Composition
  • Atoms are composed of three types of subatomic particles:
    • Protons:
    • Positively charged particles (+).
    • Neutrons:
    • Neutral particles located in the nucleus; weight approximately 1 atomic mass unit (1 amu).
    • Electrons:
    • Negatively charged particles (−), found in orbitals surrounding the nucleus; virtually weightless (0 amu).
Atomic Models
  • There are two common models of atomic structure:
    1. Planetary Model:
    • Electrons orbit around the nucleus like planets around the sun.
    1. Orbital Model:
    • Electrons are found in an electron cloud surrounding the nucleus, with orbitals representing probable locations.
Identifying Elements
  • Elements are characterized by differing numbers of subatomic particles:
    • Hydrogen: 1 proton, 0 neutrons, and 1 electron.
    • Helium: 2 protons, 2 neutrons, and 2 electrons.
    • Lithium: 3 protons, 4 neutrons, and 3 electrons.
Element Characteristics
  • Element Definition:
    • Any substance that cannot be chemically broken down into simpler substances.
  • Atomic Number:
    • The number of protons in the nucleus; unique for each element, denoted as a subscript to the left of the atomic symbol (e.g., 3Li).
  • Mass Number:
    • The total number of protons and neutrons in the nucleus; written as a superscript to the left of the atomic symbol (e.g., 7Li).
Valence Electrons and Chemical Stability
  • The periodic table organizes elements according to their valence electrons; the outermost electrons determining chemical properties.
    • Valence Electrons: Electrons in the outermost energy level.
    • Inert (nonreactive) elements possess all eight electrons in their valence shell.
  • Octet Rule: Atoms strive for a complete outer energy level, typically eight electrons (with exceptions like H and He, which seek only 2).
Atomic Mass vs Weight
  • Mass refers to the quantity of substance.
  • Weight refers to the gravitational force on the substance.
  • The atomic mass is the sum of protons and neutrons, with each having a mass of approximately 1 Dalton.
Isotopes
  • Isotopes are structural variations of the same element that share the same number of protons but differ in neutrons, leading to different mass numbers.
  • Atomic Weight: The average mass number of all isotopes of an element.
  • Radioactive Isotopes: Unstable isotopes that emit radiation as they decay; defined by their half-life, which is the time required for half of the atoms in a sample to decay.
Example of Carbon Isotopes
  • Carbon-12: 6 Protons, 6 Neutrons, 6 Electrons.
  • Carbon-13: 6 Protons, 7 Neutrons, 6 Electrons.
  • Carbon-14: 6 Protons, 8 Neutrons, 6 Electrons.
Molecules and Compounds
  • Molecules: General term for 2 or more atoms bonded together (can be identical or different atoms).
  • Compounds: Specific type of molecule consisting of two or more different types of atoms bonded together (e.g., C6H12O6).
  • Homogeneous Molecules: Molecules composed exclusively of one type of atom (e.g., O2 or H2).
Chemical Bonds
  • Chemical Bonds: Represent energy relationships between electrons of reacting atoms.
  • Chemical bonds are not physical structures but instead ensure stable associations among atoms.
Role of Electrons in Chemical Bonding
  • Electrons: Subatomic particles that play a crucial role in chemical interactions.
    • Electrons occupy regions around the nucleus called electron shells, which are synonymous with energy levels.
  • The outermost shell, known as the valence shell, holds the electrons that dictate chemical behavior and stability.
  • Electron shells can accommodate a designated number of electrons:
    • Shell 1: Max of 2 electrons
    • Shell 2: Max of 8 electrons
    • Shell 3: Max of 18 electrons
Octet Rule in Chemical Bonding
  • Atoms seek to have 8 electrons in their valence shell (Octet Rule).
    • Exceptions include smaller atoms (like H and He), which only desire 2 electrons.
  • The drive for stability led to the formation of chemical bonds as most atoms seek to complete their outer valence shell.
Chemically Inert and Reactive Elements
  • Chemically Inert Elements: Possess a complete valence shell, leading to stability and lack of reactivity (e.g., He and Ne).
  • Chemically Reactive Elements: Have an incomplete valence shell, readily engaging in chemical reactions (e.g., H, C, O, Na).
Questions for Review
  1. What subatomic particles determine the mass of an atom?
    • Protons and Neutrons determine atomic mass.
  2. What subatomic particles determine the charge of an atom?
    • Protons and Electrons determine atomic charge.
  3. What is the relationship of the octet rule and chemical stability?
    • Achieving a full valence shell of eight electrons (or two for hydrogen and helium) leads to chemical stability.