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Polymerase chain reaction and gel electrophoresis

PCR - polymerase chain reaction

  • technique used to simplify small fragments of DNA

  • has revolutionised medical science

desired section of DNA is placed in a reaction chamber that has

  • various free nucleotide triphosphates

  • primers which allow replication from desired point

  • and a special heat stable version of DNA polymerase called Taq polymerase

    • was originally found in bacteria that live in hot springs

    • doesnt denature at the high temps used in PCR - can function in repeated cycles

  1. DNA is heat enough to break hydrogen bonds that hold the 2 DNA strands together

    • called the denaturation phase

    • short primer sequence bonds to complementary sequences in DNA sample

      • known as annealing phase

  2. extension phase - bonding of primers allows Taq polymerase to replicate DNA using the primer as a starting point

  3. once DNA has been replicated, the strands are heated to point of separation & process begins again

each time a cycle occurs - amount of DNA doubles

if scientists needed to know more about an individual’s DNA, could use gel electrophoresis

  • identifies key features of DNA

  • uitilizes an electrical current to move molecules through a semisolid medium or gel

  • DNA molecules are separated by their size & amount of charge

  • DNA molecules hv negative electrical charge

to get fragments of appropriate size, DNA is digested using enzymes called restriction endonucleases

  • cut the backbone of DNA - create shorter segments


eukaryotic DNA is normally supercoiled by being tightly wound around histones to form nucleosomes

  • helps package DNA and allows it to fit better in nucleus

  • 1st step: unwind coils to make strands accessible to enzymes

  • helicase then unwinds the double helix and separates the 2 DNA strands by breaking the hydrogen bonds

  • then, DNA polymerase moves along separate strands, uses them as templates, and builds a new strand of DNA by placing and attaching free nucleotides in a chain

prokaryotic DNA - naked DNA