Phylogeny: demonstrates the evolutionary history of a species or groups of species; show patterns of descent, no phenotypic similarity; they do not generally indicate when a species evolved or how much change occurred (these things have to be noted in a tree to be considered); cannot be assumed that one taxon evolved from the taxon next to it, just that they had a common ancestor.
taxonomy: system created to order the division and name of organisms
binomial nomenclature:
the first part of the name is the genus
ex. drosophila
the second part called the specific epithet is unique for each species
ex. drosophila melanogaster
first letter is capitalized and entire species name is italicized
ex. D. melanogaster
taxa/taxon: named group of organisms
branch point: represents the divergence of two taxa from a common ancestor
clade: group of species that includes an ancestral species and all its descendants
basal taxon: diverged early in the history of a group and origin near the common ancestor of the group
sister taxa: groups that share immediate ancestor
outgroup: species that is closely related to the ingroup, the various species benign studied.
homology: similar due to shared ancestry/divergent evolution
analogy: similar due to convergent evolution; similar environments caused unrelated species to develop similar adaptive traits
Molecular homologies are based on similarity at the DNA (or protein) level; phylogenetic trees based on DNA sequences changes: length of a branch can reflect number of genetic changes.
Homoplasies are examples of phenotypes/characteristics that are similar between organisms that are unrelated (e.g. both bats and bugs can fly)
Shared ancestral characters: originated in an ancestor of a taxon
Shared derived characters: evolutionary novelty that is unique to a clade or taxon - Some characters can be both ancestral and derived depending on context
maximum parsimony: make a family tree for species by choosing the simplest explanation—meaning the tree that needs the fewest changes in traits or DNA.