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A1.1 Water - Bio HL

 

Water: the medium for life

       Earth has existed for 4.5 billion years

       Water has existed on Earth for 3.8 billion years

       First cells on Earth originated 2000 mya in water.

       Water blocked harmful UV rays from destroying these cells leading to evolution of life forms

       65%-95% by mass of most multicellular organisms is water

       80% of human cells is water

 

Why is water important to life?

       Provides a medium in which enzymes dissolve to work

       Provides a chemically stable medium for life processes to operate

 

Atoms, Molecules and Covalent bonds

       There are 118 chemical elements

        These elements are the fundamental building blocks of matter.

       j

       The structure of atoms includes protons and neutrons in the central nucleus and electrons in outside orbitals.

       The outermost electrons are known as valence electrons.

       k

       Pairs of valence electrons can be shared between atoms forming covalent bonds to form a molecule.

       k

       A water molecule is formed by covalent bonding between 1 Oxygen atom and 2 hydrogen atoms sharing their valence electrons.

       Valence electrons can be lost by an atom, creating a cation, or gained by an atom, creating an anion.

 

 

 

 

 

Polarity in water molecules

       Electrons are not equally shared between oxygen and hydrogen atoms in a water molecule

       Water molecule has the shape of letter V.

       The nucleus of oxygen atom draws electrons away from hydrogen atoms.

       There is a net negative charge on the oxygen atom and net positive charge on hydrogen atoms

 

 

Water molecules show Dipolarity

       A polar molecule is one having positively & negatively charged areas because of an uneven distribution of electrons.

       Water molecule has a:

  1. Negative pole – Area with more electrons around oxygen atom

  2. Positive pole – Area with fewer electrons near the hydrogen atom nuclei.

 

 

Hydrogen bond between water molecules

       The positively charged hydrogen atoms are attracted to negatively charged oxygen atoms of neighbouring water molecules.

       These (weak) attractive forces are called hydrogen bonds

 

 

Hydrogen bonds:

       Are weaker than covalent bonds

       Are strong enough to hold water molecules together

       Attract water molecules to a charged surface or charged particles

       Are largely responsible for the unique properties of water

Properties of water molecules :

Cohesion

       Force by which individual molecules of the same type attract and associate (stick together)

       H-bonds make water molecules stick to each other more strongly.

       Cohesion is important in transporting water through xylem in vascular plants

       In the leaves of a tree, water evaporates from the surface of inner cell walls into air spaces in the leaf.

       As water molecules evaporate, they are replaced by water from within the cells

       More water molecules move from the xylem into the leaf cells, creating tension, a force to pull water against gravity.

       This tension is transmitted down a continuous column (cohesive force) of water molecules all the way to the root.

 

Cohesion and surface tension

       There are no neighbouring water molecules above the surface of water.

       These water molecules exhibit stronger attractive forces with water molecules below them and with nearest neighbours on the surface.

       The net inward force causes molecules on the surface to contract and resist being stretched or broken.

       This is called surface tension.

 

Consequence of surface tension to organisms

       Water striders (Gerris lacustris, also called pond skaters) live on the surface of calm and unpolluted bodies of water.

       Mass of the insect is not great enough to break the surface tension.

       Waxy cuticle prevents the insect from getting wet.

       When the pond skater moves over the surface of water:

 

  1. Surface tension supports it

  2. The surface of water is depressed but hydrogen bonds hold it together

 

Adhesion of water and its impact on organisms

       The attraction between water and other materials

       Adhesion make surfaces “wet”

       Hydrogen bonds are readily formed between molecules and a hydrophilic substance

       Water adheres to most surfaces and can be drawn up long columns like xylem

n.b. cohesion is a far stronger force in xylem transport than adhesion – cohesion can resist tension

 

Viscosity

       Water molecules slide past each other very easily, below the surface

       Hence water flows through tiny capillaries, gaps and pores.

 

Capillary action in soils

       Cohesion and adhesion causes water to be pulled through narrow tubes and spaces – capillary action

       Occurs when adhesion is greater than cohesion

       k

       Channels between soil particles (where plant roots are) behave like capillary tubes.

       Adhesion between water molecules and these capillary tubes draws up water, above the water table

       Hence soil does not dry out around plant roots.

 

 

Capillary action in plant cell walls

       Cell wall in plant cells are made of a fibrous material called cellulose

       As water enters a leaf cell from the xylem, water is pulled by capillary action into the spaces between the cellulose fibers

       k

       Water evaporates from the surface of spongy mesophyll cells into the air spaces inside the leaf and then out through the stomata

        k

       Capillary action draws out more water from the xylem into the walls of these cells, preventing these cells from drying out.

       These events draw water up continuously through the plant.

 

Water is a liquid at room temperature

       The potential energy of hydrogen bonds in water is greater than the KE of its molecules upto 100⁰C.

       Hence hydrogen bonds pull water molecules very close to each other

       This makes water liquid at normal temperature and pressure.

 

Solvent properties of water and polar substances

       Ionic substances (extremely polar) like (NaCl) dissociate into anions (negative charge) and cations (positive charge) while dissolving in water

       These ions become surrounded by a layer of orientated water molecules

       Amino acids are hydrophilic as they have ionized groups - positively charged amino (‒NH₃⁺) groups and negatively charged carboxyl (‒COO⁻) groups.

        

       Sugars have slightly charged hydroxyl (–OH) groups, which forms hydrogen bonds with water to dissolve in it.

       These hydrophilic molecules become chemically reactive and are free to move around inside the cell in soluble form.

 

Solvent properties of water and non-polar substances

       Non-polar substances are hydrophobic and are repelled by water.

       Cell membrane is made from phospholipids.

       k

       Each phospholipid molecule has a hydrophilic part which forms the head and two hydrophobic tails.

       While forming cell membrane, the phospholipids orient themselves to form a bilayer.

       Hydrophilic heads of the bilayer are in contact with aqueous environment inside and outside the cell.

       k

       Hydrophobic tails are oriented inwards away from the watery environment.

       CO₂ is more soluble in water than oxygen and nitrogen.

       Some CO₂ dissolves in water to form carbonic acid (H₂CO₃) which dissociates into hydrogen ions (H⁺) and bicarbonate ions (HCO₃⁻)

       k

       Oxygen gas is a non-polar substance.

       Poor solubility of oxygen has resulted in evolution of respiratory pigments like haemoglobin which has efficient oxygen-carrying capacity than water.

 

Solvent properties of water and metabolic reactions

       Most enzymes become active forms only in water and hence many enzyme-catalysed reactions occur in water

       Water is a requirement for some enzymes to maintain its shape, stability and functionality.

       Hydrogen bonds often act as bridges between the active site of enzymes and its substrates.

 

Solvent properties of water and transport

       Polar substances like amino acids and sugars are transported from cell to cell in a watery medium in multicellular plants and animals.

       Blood in animals have plasma which uses water as a solvent to transport small, hydrophilic molecules.

       Plants transport sucrose and amino acids which are dissolved in the phloem sap

 

 

Movement of water through cell membrane

       Water moves through special transmembrane proteins called aquaporins.

       These proteins have a hydrophilic interior which allows water to move inside or outside a cell

       These proteins are anchored in place in the membrane by a hydrophobic exterior

 

Ø  Buoyancy

       The ability of any fluid to provide a vertical upward force on an object placed in/on it.

       Liquid water has high density allowing materials that are less dense to float on it.

       Air is less dense than water, so less buoyant as well

 

Ø  Viscosity

       Viscosity is resistance to flow

       Related to how much energy is needed to change the shape of a liquid.

       k

       Water has low viscosity compared with other liquids, but greater viscosity than air.

       Water molecules slide past each other very easily, below the surface

       Hence water flows through tiny capillaries, gaps and pores.

 

 

 

Ø  Specific heat capacity

       The amount of energy required to raise the temperature of 1 kg of a substance by 1⁰C.

       Water has a higher specific heat capacity than air

       k

       More energy is needed to overcome the intermolecular forces (hydrogen bonds) in water to increase its temperature

       Aquatic environments therefore, have stable temperature.

       Water has the ability to absorb and lose heat without undergoing large temperature change.

       This protects cells and organisms from large changes in temperature fluctuations.

 

Ø  Thermal conductivity

       The ability of a substance to transfer heat when there is a temperature difference.

       Water has a high thermal conductivity compared with other liquids (except liquid metals).

       Air has a much lower thermal conductivity than water.

 

Physical properties of water and its consequences to Ringed Seal and Black-throated loon

Refer to WS

 

Extraplanetary origin of water on Earth

       Extremely hot conditions on Earth 4.5 b.y.a

       Impossible for water vapour to condense into liquid water

       Asteroids and meteorites are most likely Earth’s source of water

       Asteroids still contain ice and amino acids – critical for evolution of life

       k

       Meteorites (break off from asteroids) like carbonaceous chondrites contain water trapped in mineral crystals

       These contain isotopes of hydrogen (deuterium and protium), which closely matches with that of ocean water.

       Two 4.5-billion-year-old meteorites support this hypothesis

       k

       The meteorite eucrite achondrite (origin from asteroid Vesta in the asteroid belt between Jupiter and Mars) has deuterium protium ratio that matches with current Earth.

       Meteorites heated up on impact with Earth releasing water vapour which were trapped by Earth’s gravity

 

 

 

       When surface temperature of Earth became cooler, water vapour condensed into liquid water.

       Earth’s gravity retained this water.

       The presence of liquid water as a solvent and medium for metabolism is considered necessary for life.

 

 

 

Goldilock Zone

       Astrobiologists believe extraterrestrial life will be found only in the presence of liquid water on other planets or natural satellites.

       The habitable zone, or Goldilocks zone, refers to the orbital distance from a star that will result in liquid water.

       Earth is in the Goldilocks zone because its distance from its star (the Sun) is neither too hot nor too cold to prevent liquid water – it is just the right distance.

 

 

Search for extraterrestrial life

       Wavelengths of light are absorbed or reflected when a planet passes in front of its nearest star.

       k

       By analysing the light (transit spectroscopy) it is possible to find whether the atmosphere of the planet contains water.

       k

       This technique is used to establish that exoplanets in the Goldilocks zone (right distance from its star and right size) like Kepler-186f may have a “water signature” and therefore extraterrestrial life.

 

 

 

MD

A1.1 Water - Bio HL

 

Water: the medium for life

       Earth has existed for 4.5 billion years

       Water has existed on Earth for 3.8 billion years

       First cells on Earth originated 2000 mya in water.

       Water blocked harmful UV rays from destroying these cells leading to evolution of life forms

       65%-95% by mass of most multicellular organisms is water

       80% of human cells is water

 

Why is water important to life?

       Provides a medium in which enzymes dissolve to work

       Provides a chemically stable medium for life processes to operate

 

Atoms, Molecules and Covalent bonds

       There are 118 chemical elements

        These elements are the fundamental building blocks of matter.

       j

       The structure of atoms includes protons and neutrons in the central nucleus and electrons in outside orbitals.

       The outermost electrons are known as valence electrons.

       k

       Pairs of valence electrons can be shared between atoms forming covalent bonds to form a molecule.

       k

       A water molecule is formed by covalent bonding between 1 Oxygen atom and 2 hydrogen atoms sharing their valence electrons.

       Valence electrons can be lost by an atom, creating a cation, or gained by an atom, creating an anion.

 

 

 

 

 

Polarity in water molecules

       Electrons are not equally shared between oxygen and hydrogen atoms in a water molecule

       Water molecule has the shape of letter V.

       The nucleus of oxygen atom draws electrons away from hydrogen atoms.

       There is a net negative charge on the oxygen atom and net positive charge on hydrogen atoms

 

 

Water molecules show Dipolarity

       A polar molecule is one having positively & negatively charged areas because of an uneven distribution of electrons.

       Water molecule has a:

  1. Negative pole – Area with more electrons around oxygen atom

  2. Positive pole – Area with fewer electrons near the hydrogen atom nuclei.

 

 

Hydrogen bond between water molecules

       The positively charged hydrogen atoms are attracted to negatively charged oxygen atoms of neighbouring water molecules.

       These (weak) attractive forces are called hydrogen bonds

 

 

Hydrogen bonds:

       Are weaker than covalent bonds

       Are strong enough to hold water molecules together

       Attract water molecules to a charged surface or charged particles

       Are largely responsible for the unique properties of water

Properties of water molecules :

Cohesion

       Force by which individual molecules of the same type attract and associate (stick together)

       H-bonds make water molecules stick to each other more strongly.

       Cohesion is important in transporting water through xylem in vascular plants

       In the leaves of a tree, water evaporates from the surface of inner cell walls into air spaces in the leaf.

       As water molecules evaporate, they are replaced by water from within the cells

       More water molecules move from the xylem into the leaf cells, creating tension, a force to pull water against gravity.

       This tension is transmitted down a continuous column (cohesive force) of water molecules all the way to the root.

 

Cohesion and surface tension

       There are no neighbouring water molecules above the surface of water.

       These water molecules exhibit stronger attractive forces with water molecules below them and with nearest neighbours on the surface.

       The net inward force causes molecules on the surface to contract and resist being stretched or broken.

       This is called surface tension.

 

Consequence of surface tension to organisms

       Water striders (Gerris lacustris, also called pond skaters) live on the surface of calm and unpolluted bodies of water.

       Mass of the insect is not great enough to break the surface tension.

       Waxy cuticle prevents the insect from getting wet.

       When the pond skater moves over the surface of water:

 

  1. Surface tension supports it

  2. The surface of water is depressed but hydrogen bonds hold it together

 

Adhesion of water and its impact on organisms

       The attraction between water and other materials

       Adhesion make surfaces “wet”

       Hydrogen bonds are readily formed between molecules and a hydrophilic substance

       Water adheres to most surfaces and can be drawn up long columns like xylem

n.b. cohesion is a far stronger force in xylem transport than adhesion – cohesion can resist tension

 

Viscosity

       Water molecules slide past each other very easily, below the surface

       Hence water flows through tiny capillaries, gaps and pores.

 

Capillary action in soils

       Cohesion and adhesion causes water to be pulled through narrow tubes and spaces – capillary action

       Occurs when adhesion is greater than cohesion

       k

       Channels between soil particles (where plant roots are) behave like capillary tubes.

       Adhesion between water molecules and these capillary tubes draws up water, above the water table

       Hence soil does not dry out around plant roots.

 

 

Capillary action in plant cell walls

       Cell wall in plant cells are made of a fibrous material called cellulose

       As water enters a leaf cell from the xylem, water is pulled by capillary action into the spaces between the cellulose fibers

       k

       Water evaporates from the surface of spongy mesophyll cells into the air spaces inside the leaf and then out through the stomata

        k

       Capillary action draws out more water from the xylem into the walls of these cells, preventing these cells from drying out.

       These events draw water up continuously through the plant.

 

Water is a liquid at room temperature

       The potential energy of hydrogen bonds in water is greater than the KE of its molecules upto 100⁰C.

       Hence hydrogen bonds pull water molecules very close to each other

       This makes water liquid at normal temperature and pressure.

 

Solvent properties of water and polar substances

       Ionic substances (extremely polar) like (NaCl) dissociate into anions (negative charge) and cations (positive charge) while dissolving in water

       These ions become surrounded by a layer of orientated water molecules

       Amino acids are hydrophilic as they have ionized groups - positively charged amino (‒NH₃⁺) groups and negatively charged carboxyl (‒COO⁻) groups.

        

       Sugars have slightly charged hydroxyl (–OH) groups, which forms hydrogen bonds with water to dissolve in it.

       These hydrophilic molecules become chemically reactive and are free to move around inside the cell in soluble form.

 

Solvent properties of water and non-polar substances

       Non-polar substances are hydrophobic and are repelled by water.

       Cell membrane is made from phospholipids.

       k

       Each phospholipid molecule has a hydrophilic part which forms the head and two hydrophobic tails.

       While forming cell membrane, the phospholipids orient themselves to form a bilayer.

       Hydrophilic heads of the bilayer are in contact with aqueous environment inside and outside the cell.

       k

       Hydrophobic tails are oriented inwards away from the watery environment.

       CO₂ is more soluble in water than oxygen and nitrogen.

       Some CO₂ dissolves in water to form carbonic acid (H₂CO₃) which dissociates into hydrogen ions (H⁺) and bicarbonate ions (HCO₃⁻)

       k

       Oxygen gas is a non-polar substance.

       Poor solubility of oxygen has resulted in evolution of respiratory pigments like haemoglobin which has efficient oxygen-carrying capacity than water.

 

Solvent properties of water and metabolic reactions

       Most enzymes become active forms only in water and hence many enzyme-catalysed reactions occur in water

       Water is a requirement for some enzymes to maintain its shape, stability and functionality.

       Hydrogen bonds often act as bridges between the active site of enzymes and its substrates.

 

Solvent properties of water and transport

       Polar substances like amino acids and sugars are transported from cell to cell in a watery medium in multicellular plants and animals.

       Blood in animals have plasma which uses water as a solvent to transport small, hydrophilic molecules.

       Plants transport sucrose and amino acids which are dissolved in the phloem sap

 

 

Movement of water through cell membrane

       Water moves through special transmembrane proteins called aquaporins.

       These proteins have a hydrophilic interior which allows water to move inside or outside a cell

       These proteins are anchored in place in the membrane by a hydrophobic exterior

 

Ø  Buoyancy

       The ability of any fluid to provide a vertical upward force on an object placed in/on it.

       Liquid water has high density allowing materials that are less dense to float on it.

       Air is less dense than water, so less buoyant as well

 

Ø  Viscosity

       Viscosity is resistance to flow

       Related to how much energy is needed to change the shape of a liquid.

       k

       Water has low viscosity compared with other liquids, but greater viscosity than air.

       Water molecules slide past each other very easily, below the surface

       Hence water flows through tiny capillaries, gaps and pores.

 

 

 

Ø  Specific heat capacity

       The amount of energy required to raise the temperature of 1 kg of a substance by 1⁰C.

       Water has a higher specific heat capacity than air

       k

       More energy is needed to overcome the intermolecular forces (hydrogen bonds) in water to increase its temperature

       Aquatic environments therefore, have stable temperature.

       Water has the ability to absorb and lose heat without undergoing large temperature change.

       This protects cells and organisms from large changes in temperature fluctuations.

 

Ø  Thermal conductivity

       The ability of a substance to transfer heat when there is a temperature difference.

       Water has a high thermal conductivity compared with other liquids (except liquid metals).

       Air has a much lower thermal conductivity than water.

 

Physical properties of water and its consequences to Ringed Seal and Black-throated loon

Refer to WS

 

Extraplanetary origin of water on Earth

       Extremely hot conditions on Earth 4.5 b.y.a

       Impossible for water vapour to condense into liquid water

       Asteroids and meteorites are most likely Earth’s source of water

       Asteroids still contain ice and amino acids – critical for evolution of life

       k

       Meteorites (break off from asteroids) like carbonaceous chondrites contain water trapped in mineral crystals

       These contain isotopes of hydrogen (deuterium and protium), which closely matches with that of ocean water.

       Two 4.5-billion-year-old meteorites support this hypothesis

       k

       The meteorite eucrite achondrite (origin from asteroid Vesta in the asteroid belt between Jupiter and Mars) has deuterium protium ratio that matches with current Earth.

       Meteorites heated up on impact with Earth releasing water vapour which were trapped by Earth’s gravity

 

 

 

       When surface temperature of Earth became cooler, water vapour condensed into liquid water.

       Earth’s gravity retained this water.

       The presence of liquid water as a solvent and medium for metabolism is considered necessary for life.

 

 

 

Goldilock Zone

       Astrobiologists believe extraterrestrial life will be found only in the presence of liquid water on other planets or natural satellites.

       The habitable zone, or Goldilocks zone, refers to the orbital distance from a star that will result in liquid water.

       Earth is in the Goldilocks zone because its distance from its star (the Sun) is neither too hot nor too cold to prevent liquid water – it is just the right distance.

 

 

Search for extraterrestrial life

       Wavelengths of light are absorbed or reflected when a planet passes in front of its nearest star.

       k

       By analysing the light (transit spectroscopy) it is possible to find whether the atmosphere of the planet contains water.

       k

       This technique is used to establish that exoplanets in the Goldilocks zone (right distance from its star and right size) like Kepler-186f may have a “water signature” and therefore extraterrestrial life.

 

 

 

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