MedChem Notes

Approaching Salt Form Questions

  • When identifying a salt, focus on the smaller molecule, such as hydrochloric acid.
  • Recognize that salt formation involves an acid reacting with a base.
  • If reacting with an acid, the drug molecule needs to have a base.

Identifying Basic Functional Groups

  • In the context of drug molecules, a basic functional group will react with an acid to form a salt.
  • Amides are neither acidic nor basic.

Acidity of Hydroxyl Groups

  • Generally, hydroxyl groups (OH) are neither acidic nor basic.
  • A key exception is phenol, which is an acidic group.
  • The enolic form of a beta-dicarbonyl is acidic due to keto-enol tautomerism.
  • Beta-dicarbonyls, when deprotonated, can strongly bind calcium, as seen in tetracycline.

Salt Forms and Drug Interactions

  • Salt forms and acid-base reactions are crucial due to potential drug-drug interactions and incompatibilities, especially in hospital pharmacies when creating IV solutions.
  • Compatibility charts are used to determine if drugs can be mixed in the same syringe.
  • Incompatibilities often occur due to acid-base reactions leading to salt formation, where the resulting high molecular weight causes precipitation.
  • Incompatibilities can also arise from differing pH levels in solutions, affecting whether a drug is in its ionized (soluble) or unionized (insoluble) form.

Drug Incompatibilities: Y-Sites and Syringes

  • Y-sites refer to configurations where two drugs enter tubing and mix in a Y-shaped junction. Compatibility must be assessed at Y-sites and in syringes.
  • Syringe compatibility is more critical due to higher drug concentrations, increasing the likelihood of reactions. What may be compatible in IV mixtures might be incompatible in syringes.

Example of Drug-Drug Incompatibility

  • Furosemide and dobutamine are incompatible due to an acid-base reaction. Furosemide contains a carboxylic acid (acid), while dobutamine contains an amine group (base).

Syringe Incompatibility Example

  • Ketorolac and morphine are incompatible in a syringe due to an acid-base interaction where the carboxylic acid of ketorolac reacts with the tertiary nitrogen of morphine.

Clinical Scenario: Ketamine Compatibility

  • Ketamine (a base) should not be mixed with phenobarbital (an acid) in the same syringe.
  • Phenobarbital contains acidic protons next to two carbonyl groups.
  • Morphine has a phenolic hydroxyl group, which is a weak base and will not be ionized in solution at physiological pH.

Functional Groups and Lipophilicity/Hydrophilicity

  • Drugs need both water solubility (hydrophilicity) and lipid solubility (lipophilicity) to move through the body and across cell membranes.
  • Halogens are generally lipophilic though fluorine can sometimes act as a hydrogen bond acceptor, adding some hydrophilicity.
  • Adding fluorine to drug molecules often increases lipophilicity.

Determining Solubility: Partition Coefficient

  • Solubility is determined using a separatory funnel containing octanol (representing fat) and water (representing the hydrophilic part), measuring drug concentration in each.
  • The partition coefficient is the ratio of drug concentrations in octanol and water.
  • Logarithms are used to simplify the understanding of concentration values, converting them to log P values.

Log P and Log D

  • log P: Is a unitless value representing the logarithm of the partition coefficient of the neutral (unionized) compound.
  • log D: Represents distribution coefficient and takes pH into account, reflecting both ionized and unionized forms of the drug.
  • log D values must always specify the pH at which they were measured.
  • A log P value greater than 1 indicates higher solubility in lipids, while a higher number indicates greater lipid solubility.

Ibuprofen Example

  • Ibuprofen has a log P of 3.7, indicating it is lipid-soluble but its log P never changes.
  • The log D of ibuprofen varies with pH. At pH 1, the log D is 3.7, mirroring the log P because the carboxylic acid is protonated.
  • At pH 10, the log D is lower due to the carboxylic acid being ionized (O-), making it more water-soluble.

Calculating Log P

  • log P can be calculated by summing the pi values of each functional group in the molecule. : Log P = \sum{\pi}
  • Positive pi values indicate lipophilic contributions.
  • Negative pi values indicate hydrophilic contributions.

Procaine Example

  • The calculated log P for procaine is 2.3, predicting insolubility in water. log P values greater than 5 indicate insolubility in water, while values less than 0.5 suggest water solubility.

Log P and Drug Action

  • Pharmacists use log P to select drugs with desired characteristics like speed of onset. For instance, a more lipophilic drug crosses the blood brain barrier faster.
  • Lorazepam, with an extra chlorine atom (halogen), is more lipophilic than oxazepam and has a quicker onset of action.

Water Solubility and Drug Administration

  • A drug with greater water solubility (more negative log P) may only be available intravenously (IV) due to poor oral absorption.
  • Highly water-soluble IV drugs may not be effective if given orally as they won't be absorbed.

Importance of Understanding pH and pKa

  • Understanding pH and pKa is critical in medicinal chemistry. It influences solubility, absorption, distribution, elimination, and binding of drugs.

pH in the Gastrointestinal Tract

  • As a drug moves through the GI tract, it encounters varying pH levels, affecting its ionization state and absorption.
  • The unionized form of a drug is absorbed.

Physiological pH

  • Physiological pH (pH of blood) is 7.4

pH vs pKa

  • pH: Is a property of the solution, can be measured, and varies based on the solution.
  • pKa: Is a constant property of a functional group and does not change.

Rules of Nine

  • Step 1: Draw the dissociation equation of the functional group, independent of the question’s pH. Use resources like “Foye’s Principles of Medicinal Chemistry” or “Boy’s medicinal chemistry” for reference.
  • Step 2: Compare the pKa to the pH, noting whether the environment is more acidic or basic.
  • Strep 3: For acidic conditions, draw protons (H+) everywhere. For basic conditions, draw nothing.
  • Step 4: Identify the “happy side” – the side with the proton in acidic conditions, or without the proton in basic conditions.
  • Step 5: Determine how “happy” the side is based on log units:
    • One log unit: 90% happy
    • Two log units: 99% happy
    • Three log units: 99.9% happy
  • Step 6: Answer the specific question asked.