Send a link to your students to track their progress
113 Terms
1
New cards
fungi are most important group of __ pathogens
plant
2
New cards
impact of fungal plant pathogens
Dutch elm disease (Ophiostoma ulmi)
\ Coffee Rust
\ Panama disease: changed the banana industry
\ Rice blast
\ wheat stem (black rust)
\ Banana black sigatoka
3
New cards
why fungi are so destructive
* large amounts of inoculum * short latent period * efficient dissemination * production of toxins & hydrolytic enzymes * high rates of evolution
4
New cards
anthropogenic factors contributing to emergence & spread of fungal disease
* global warming * pathogen introduction * industrialization of agricultural * microbial adaptation/evolution & fungicide resistance * lack of political will
5
New cards
the disease triangle
pathogen
host (plant)
environment
6
New cards
nutritional lifestyles & pathogenic strategies of fungal plant pathogens
necrotrophs: kills host plant cells & feeds on dead tissue, lots of toxin
\ biotrophs: colonize & derive nutrients from living plant tissues
* can be obligate or facultative
\ hemi-biotrophs: 1st establish a biotrophic phase & then switch to being necrotrophs
1. passive entry via natural openings 2. appressoria 3. neutralization of host defense
1. \ 4. colonization of host tissues 5. reproduction on the host
8
New cards
infection stage I
adhesion of fungal spores & germlinngs on plant surface via
\ extracellular matrix material (aka mucilage)
* fungal glue, varies in composition b/t sp, consists of water-insoluble glycoproteins, lectins, lipids, & polysaccharides
\ adhesins
* highly glycosylated cell surface proteins that confer the ability of attachment to cells, tissues, and/or abiotic surfaces * consist of N-terminal carbohydrate or peptide binding domain, central Ser- & Thr- rich glycosylated domains, C-terminal region that mediates covalent cross-linking to the wall through modified anchors (GPI: glycosylphosphatidylinositol)
9
New cards
infection stage II: gaining entry into plant host
passive = entry via natural openings ie stomata or wounds
* no specialized structures req’d * usually req high humidity for germination * mainly in apoplastic pathogens (don’t enter host cells, but grow in b/t plant cells)
mechanical = special structure ie appressoria & haustoria or both
10
New cards
cutinases
fungi constantly produce cutinases in small amount → cutin monomers releases → these signal fungus to produce more cutinases, PCWDEs, formation of appressoria
11
New cards
appressoria
* formed by germ tube * build up extreme turgor pressure * melanin, accumulation of glycerol to inc osmotic potential of cytoplasm
12
New cards
infection stage IV: obtaining nutrients from the host
infection process of hemi/biotrophic fungi → don’t cause cell death for a couple days → feeding structures
* characteristic of fungi w/long-term obligate biotrophic relationships w/plant * branches of inter/intra/epicuticular hyphae that terminate w/in a host cell → only 1 haustorium per cell * common for some fungi which ultimately
14
New cards
intracellular hyphae
* go inside host cell, can cross into different cells (not determinate) * mostly in hemi-biotrophic * can develop necrotrophic hyphae
15
New cards
arbuscules
* used by arbuscular mycorrhizae
16
New cards
fungal secreted phytotoxins
definition = SM that are bio active in small amounts, move inside plant, NOT including lytic enzymes
\ phytotoxin criteria
* toxin in diseased tissue * reproduction of disease symptoms by purified toxin * relationship of toxin production to pathogenicity or virulence * production of toxin by pathogens vs non-pathgoens * host genetic control of disease and toxin sensitivity
* required for virulence/infection * not all genotypes of host plant are sensitive to toxin * not all isolates of pathogen produce the toxin * mainly in Pleosporales (Dothideomycetes)
\ \ nHST
* vast majority of toxins made by fungi * bio active against broad spectrum of plant sp * may/not be host sp of producing fungus * not sole determinant of pathogenicity * mainly in necrotrophic pathogens
non host-specific: innate or PAMP triggered immunity
* mediated at PM receptors ie PRRs, expresses as chemical and physical defense ie stomatal closure, making phytoalexins
\ host-specific: effector-triggered immunity
* based on recognition of pathogen derived effector proteins * mediated by PM or intracellular resistance proteins (R) * ETI is most typically manifested as a hypersensitive response (HR)
23
New cards
innate or PAMP triggered immunity
based on recognizing pathogen-associated molecular patterns or plant-derived damange-associated molecular patterns
* stomatal closure, callose at infn site to isolate invader, antimicrobial cmpds (phytoalexins, defensins) reactive oxygen species
24
New cards
plant PRR’s
structure
* on PM & monitor apoplast (in b/t cells) * have extracellular domain that recognizes ligand recognition & transmembrane domain, and often a cytoplasmic kinase domain * receptor-like kinase: if kinase domain is present * receptor-like proteins: if kinase domain is absent * ECD ligand recognition domains often have horshoe-shaped structure, built for leucine-rich repeat motifs!!
\ function
* some PRR need a co-receptor while others fxn via dimerization → triggers signaling cascade → recruit regulatory receptor kinases & signal via receptor-like cytoplasmic kinases
\ \[insert pic\]
25
New cards
effector-triggered susceptibility - how do pathogens overcome host immune system?
* what is an effector?
pathogens produce effectors
* small in size, highly diverse, secreted pathogens in a spatio-temporal manner during infn * secreted into host cell (cytoplasmic effectors) or the apoplast (apoplastic effectors) * promote infn (virulence factors) by reprogramming host metabolism or interfering w/host innate immunity * via pathogen recognition, signaling to the nucleus, mounting of defenses
26
New cards
ex of effector function from Cladosporium fulvum
Avr2, Avr4, Ep6 are effectors from Cladosporium fulvum (tomato pathogen)
\ Avr2: inhibits host Cys-proteases req for basal host-defense
\ Avr4: bind to fungal chitin & protects against chitinases during pathogenesis
\ Ecp6: bind to chitin & sequestrates chtin fragments that trigger PTI → suppress PRR recognition
\ masking or protecting pathogens from host immune system
* inhibition of PTI: protect from plant chitinases, inhibit of LysM R recognition, isolation & masking of chitin oligosaccharides, degrade chitinases * antagonism w/anti-microbial cmpds: detox enzymes to degrade these antimic cmpds
28
New cards
host-specific resistance: how did plants evolve immune receptor which recognize effectors?
Effector-triggered immunity (ETI)
* avirulence protein (Avr): when effector gives away presence of pathogen to plant * hypersensitive response: apoptosis that kills inf’d host cell (most common ETI) → can act to pathogen’s favor * rapid accumulation of reactive oxygen sp at infn site → oxidative burst * expressing pathogenesis related proteins w/antifungal activity * cell wall fortification * produce signaling MAP kinases * release of systemic signals ie salicylic acid → systemic acquired resistance → sensitizes whole immune system
29
New cards
systemic acquired resistance
ETI responses are amplified by salicylic acid, jasmonic acid, ethylene
SAR is a long distance signaling mech that provide broad spectrum & long-lasting resistace to secondary infn throughout the plant
30
New cards
plant resistance (R) proteins
* plant immune receptors that recognize effectors = resistance proteins * can be on PM but most are intracellular R “nucleotide-binding domain & leucine rich repeat containing NBS-LRR or NLR) family
\ NLR are multidomain proteins
* a variable N-terminal domain: signals * a central nt-binding domain: bind ATP or GTP * a C-terminal: protein-protein interxns
recognition modes of effectors by plant resistance (R) proteins
direct recognition: effector interacts directly w/LRRs of R protein
\ guard model: most common, monitors for potential targets
\ decoy model: plants deploy a 2nd protein that resembles the actual plant target of effector → monitored by R proteins
\ integrated decoy model: R proteins carry seq that resemble effector targets
\ sensing through NLR-like proteins: lack regulatory domains, ie NB & LRR, but fxn as effector sensors
32
New cards
the plant resistosome (wheel of death)
animal NLRs: oligomierize into wheels upon activation, usually in ETI-mediated responses → inflammasome
plant NLR: same → resistosome
* N-terminal domains into central hub → form pore in PM → disrupts pathogen PM → cell death
33
New cards
gene-for-gene interactions
R proteins recognize effectors in highly specialized manner via gene-for-gene relationship ie effectors can mediate virulence in absence of cognate R proteins in host & avirulence in their presence (pathogen races)
34
New cards
zig-zag model
the contemporary view of arms-race of plant immunity
1. plant innate immunity: recognize PAMPs 2. pathogens evolved effectors to inhibit innate immunity 3. plant develop cognate R proteins recognize effectors as microbial signatures & initiate effector-triggered immunity 4. microbes evolved new effectors that inhibit fxn of R proteins → block effector triggered immunity
35
New cards
PAMP-triggered immunity vs effector triggered immunity (PTI vs ETI)
* most are opportunistic * inc if have HIV/AIDS, COVID * most are on skin * death is often result of severe respiratory illness & fungiemia (?) → septic shock/sepsis
38
New cards
factors for emergence & inc in fungal diseases
* inc # of ppl w/weakened immune systems: cancer patients, HIV, organ transplants * advancements & changes in healthcare practices: leads to drug-R * changes in environment: ie coccidiodomycosis (valley fever) & histoplasmosis from climate change * inc in T → can jump to humans (high body T) * inc seasonal migration & int’l travel
39
New cards
host factors in fungal infns
* PRRs that sense PAMPs * ancestry: racial groups are more susceptible to certain fungi * non-genetic: envir factors, lifestyle
* acidity of skin, mucous membranes to trap microbes, ciliated cells propel microbes out of body via cough, body temp/fever, competition w/microbiome * when these are breached fungi can enter the host
\
adaptive: T/B lymphocytes
44
New cards
human innate vs adaptive immunity
innate: fast (hours), general, ephemeral protection; anatomaical/physical, biochem barrier, to mediate inflammation, activates long-lived adaptive immunity
* circulate in blood/lymphatic vessels * on constant patrol for pathogens * phagocytes: formed in BM, also leads to rbc * lymphocytes: develop in BM or various lymph organs ie LN, spleen, thymus
46
New cards
lymphocytes vs phagocytes
lymphocytes: keep memory of past invaders, develop in BM
* B cell: stay in BM, produce Ab against extracellular pathogens * T cell: mature in thymus; destroy compromised cells (kill T cells) & help alert other wbc (helper T cells)
\ phagocytes
* neutrophils: most common, attack bacteria/fungi * macrophages: eat pathogens, dead cells * monocytes: develop into macrophages * mast cell: help heal wounds & defend against pathogens
47
New cards
innate immune system
recognition of PAMPs via PRRs ie TLR & NLRs
reactions:
* cytokines/chemokines to promote inflammation, recruit wbc, fever * activate phagocytes * inflammation to isolate/destroy pathogen & trigger tissue repair * maturation of APCs: ie macrophages & DCs
48
New cards
phagocytosis
1. trapping microbe via pseudopodia 2. internalize microbe w/phagosome 3. phagolysosome formation containing hydrolyzing enzymes 4. digestion: lysosome digest 5. excretion: Ag egested into blood or lymph 6. antigenicity: Ag presented by APCs via MHC to activate adaptive immune system
49
New cards
inflammation
symptoms: redness, heat, swelling, pain, loss of fxn if chronic
* small bv become wider/leaky, inc blood flow to infd area * loss of fluid makes it easier for immune cells to enter infd tissue * hormones (bradykinin, histamine) to mediate inflam response irritate nerves & cause pain signals alerting you to protect the tissues * blood clotting to prevent further spread
50
New cards
innate immunity TLRs
10 fxnal in human and 12 in mice
* dimerize when activated
51
New cards
connection b/t innate & adaptive IS
* PRR bind to PAMPs → maturation of macrophages & DCs into APCs * they present their Ag to naive helper T cells via MHC (major histocompatibility complex) proteins * → activation of B cells & cytotoxic T cells
52
New cards
adaptive IS
* mediate recognition of specific non-self Ag & differentiate from self Ag * make pathogen-specific response to eliminate * develop immune memory to quickly eliminate a specific pathogen
\ cells that mediate adaptive IS
* B cells → plasma cells to produce Ab * T cells
53
New cards
adaptive IS: humoral & cellular response
humoral: mediated by B cells that produce= immunoglobulins
deep, pulmonary or systemic mycoses: involve internal organs
58
New cards
fungi in skin & hair
cause 2 types of disease
* dermatomycosis: fungal infn of skin * trichomycosis: of hair
\ * most common * dermatophytes: Malassezia sp, * inf’d by exposure to skin/hair in soil or hard surface * cause discomfort, cosmetic problems, inflammation; rarely cause severe diseasae
59
New cards
human fungal microbiome
* Malassezia dominates majority of body sites * feet have the greatest diversity of fungal sp
60
New cards
Malassezia sp
* lipophilic yeast w/in Basidiomycota * specialized to live on skin & are ubiquitous on human skin microbiome * assoc’d w/dandruff, eczema, skin disease ie pityriasis, versicolor, psoriasis
61
New cards
Malassezia infns
Pityriasis versicolor: discoloration of skin via impairing melanocytes
\ Malassezia folliculitis: caused by fungus growing in hair follicles → inflammation
\ Seborrhoeic dermatitis, dandruff, sebopsoriasis, facial or scalp psoriasis: lipases & phospholipase made by fungi cleave ffa from triglycerides in sebum → inflammation
62
New cards
White & Black Piedra
black: caused by Piedraia hortae, common in tropical areas, black concentration in scalp hair
white: caused by 5 diff Trichosporum sp in more temperate areas; white or light brown nodules that are loosely att’d to axillary, pubic, and facial, and eyelashes
\ → both hair breaking, may spread to purpuric or necrotic cutaneous papules
* control via shaving & topicals eg ammoniated mercury, miconazole,
63
New cards
Dermatophytoses
caused by Microsporum, Trichophyton, Epidermophyton
* produce keratinases → break down keratin in epidermis, nails, hair, feathers, horns, hooves * usually stops spreading when contacts living cells * most sp in soil
64
New cards
Dermatophytes infns aka tinea infections
* Tinea capitis: hair/scalp * Tinea faciei/barbae: skin hairs (beard) * Tinea corporis: ringworm, trunk & extremities * T. cruris: groin * T.pedis/manuum: feet/hands (Athletes foot) * T. unguium: nail
65
New cards
Tinea corporis
aka ringworms
* inflammation most at edges w/erthema, scaling, blisters w/clear center
66
New cards
Tinea pedis
most common fungal skin infn
3 types: toe-web, moccasin type, vesicular infn
* v easy to transmit (in swimming pools) * caused by Trichophyton sp ie T. rubrum
67
New cards
Tinea unguium
onchomycosis; caused by Trichophyton sp (T. rubrum)
* 50% of all nail problems → secondary bacteria infn
68
New cards
dermatophyte treatment
topical: clotrimazole, miconazole
systemic: orgal
Griseofulvin: a fungal toxin made by Pencillium sp.; used orally
\ * commonly via inhaling fungal spores, mainly affect resp system * most asymptomatic * caused by dimorphic fungi
70
New cards
primary or endemic mycoses
* able to cause disease in non-immunocompromised patients * mainly enter/spread in lungs; each sp occupy different niche * have temperature dimorphism (hyphae in env, yeast in body temp)
\ most common
* Histoplasmosis (H. capsulatum) in US * Cocciodiodomycosis (San Joaquin valley fever) (C. immitis) in US * Blastomycosis (B. dermatitidis) in US * Paracoccidiomycosis (P. brasiliensis) * Penicilliosis (P. marneffei)
71
New cards
Histoplasmosis
“Pharoah’s curse” after opening mummy tombs → killed ppl
\ acquisition in nature: found in soil where bird/bat feces
common in US Mississippi River & Ohio valleys
dimorphic fungi
\ pathophysiology
* spores inhaled → yeast at body T * yeast are eaten by neutrophils/macrophages → reproduces * healthy: control infn by T cells activating macrophages * immunocompromised: may enter circulation & spread to organs
72
New cards
Histoplasmosis clinical manifestations
3 main forms
acute pulmonary: initiation form; symptoms 3-21 days after, fever
chronic cavitary: stays in lungs, weight loss, night sweates, fever, can recover w/o treatments 2-6 mo
disseminated & progressive: if weak immune system; from lungs to bloodstream; feel weak, pneumonia may dev but rarely severe except in AIDS
* w/o treatment → 90% fatal
73
New cards
Coccidiodomycosis (SJ valley fever)
C. immitis & C. posadasii
\ risk factors
* immunodeficiency * ethnicity: Filipino, Hispanic, African Americans * Gender: more male * pregnancy
74
New cards
C. immitis & human pheromones
* when treated w/human sex hormone estradiol → inc size & infectivity
75
New cards
Coccioidomycosis life cycle & pathophysiology
1. in env is hyphae 2. hyphae cells differentiate & undergo autolysis → arthroconidia (infectious form for mammals) 3. when inhaled → isotropic growth → remodels into spherule (unique to sp) 4. spherule expands → endospores 5. spherule ruptures → endospores released into lungs → acute inflammation 6. in susceptible patients, spherules may leave lung
76
New cards
Coccidioidomycoses clinical manifestations
acute: goes away w/o treatment
chronic: can occur up to 20 years later; lung abscesses, lung/rib scarring
disseminated/systemic: disease outside the chest, inflammation of membranes surrounding brain & spinal cord
77
New cards
Blastomycosis
aka North American blastomycosis or Gilchrist’s disease
* dimorphic fungus * pneumonia * via inhaling conidia * mostly id-eastern US & Canada
disseminated: may be resistricted to upper neck/face area
78
New cards
Paracoccidiomycosis
in South/Central America; common in coffee plantations
* mickey mouse disease: discrete yeast form * mainly affects lung * female estrogens may inhibit development
79
New cards
US endemic mycoses chart
80
New cards
exogenous or endogenous route of infn
81
New cards
opportunistic mycoses
* most common type * result in systemic infn only in immunocompromised patients or sick ppl * see inc before & after COVID pandemic * enter through multiple parts * most are monomorphic fugni * cosmopolitan fungi have a very low inherent virulence
* systemic infns * mostly opportunistic sp: Candida, Aspergillus, Cryptococcus * high mortality rate; due to misdiagnosis * mainly spread in hospitals
83
New cards
factors triggering opportunistic mycoses
AIDS: depletion of T cell
Bone marrow & organ transplants
cancer: leukemia, lymphoma
Drugs: cytotoxic drugs, steroids
Endocrine related: diabetes
Failure of organs
Greater lab expertise in detection of fungi
84
New cards
Candidiasis
* most important, C. albicans; others C. tropicalis, drug-R is C. auris * yeast infn or thrush * 4th most common cause of nosocomial (hospital acquired) systemic infn in US w/50% mortality rate * polymorphic fungi: yeast-like cells, pseudohyphae, hyphae, biofilms
yeast form: non-pathogenic & filamentous form is pathogenic
\ induced endocytosis: fungus expresses invasins to bind to ligands on host epithelial cells → phagocytes engulf → switch to hyphal forms → inflammation
\ activate penetration: req viable hyphae; fungal adhesion via secreted aspartic proteases (Saps); not fully understood
87
New cards
Candida overgrowth
Candida is normal microbiota w/host immune system & gut bacteria → overgrowth is promoted by
* leaky gut syndrome: Candida can drill into intestinal tissues → inflammation → pores for toxins & pathogens to enter bloodstream, delays healing of inflammation * digestive issues, autoimmune disease * xs cravings for sugar, carbs * chronic fatigue (candida die off); brain fog * diagnosis is commonly missed
88
New cards
DIY Candida overgrowth test
89
New cards
Candida overgrowth treatment
* azoles * Amphotericins * micafungin
\ best treatment
* more vegetables in diet
90
New cards
Aspergillosis
allergic bronchopulmonary aspergillosis
* allergies or asthma, shortness of breath, coughing, sneezing
chronic pulmonary aspergillosis & aspergilloma
* growth (fungal ball) that dev in are a of past lung disease or lung scarring ie TB
invasive aspergillosis
* mostly in immunocomp; high fatality
91
New cards
Mucomycosis (aka Zygomycosis)
Rhizopus sp are most common; Mucor, Absidia, Apophysomyces, Cunninghamella, Rhizomucor, Saksenaea
probe binds to fungal cell wall carbohydrate ie chitin, mannans, beta-glucans absent in human tissues
\ Avr4 from Cladosporium fluvum binds to chitin
98
New cards
fungal diseases in animals
* invertebrates * cold-blood vert * warm-blooded vertebrates
99
New cards
fungi are only group to
to show to cause extinction
100
New cards
fungi and dinosaur connection
* large-scale deforestation → fungal bloom * fungi made a fungal filter that selected for mammalian lifestyle (endothermy) and against reptiles (ectothermy) * thus releative resistance of endothermic vertebrate to fungal disease is now bc of higher body temp combined w/innate immune defenses